HEADER TRANSFERASE 07-APR-23 8IZF TITLE CRYO-EM STRUCTURE OF THE LAC1-LIP1 (LIP1-S74F) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CERAMIDE SYNTHASE LAC1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: VERY-LONG-CHAIN CERAMIDE SYNTHASE LAC1; COMPND 5 EC: 2.3.1.297; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CERAMIDE SYNTHASE SUBUNIT LIP1; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: LAG1/LAC1-INTERACTING PROTEIN 1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: LAC1, DGT1, YKL008C, YKL156; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 11 S288C); SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 GENE: LIP1, YMR298W; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SUBSTRATE, COMPLEX, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR T.XIE,Q.FANG,X.GONG REVDAT 3 23-OCT-24 8IZF 1 REMARK REVDAT 2 20-DEC-23 8IZF 1 JRNL REVDAT 1 13-DEC-23 8IZF 0 JRNL AUTH T.XIE,Q.FANG,Z.ZHANG,Y.WANG,F.DONG,X.GONG JRNL TITL STRUCTURE AND MECHANISM OF A EUKARYOTIC CERAMIDE SYNTHASE JRNL TITL 2 COMPLEX. JRNL REF EMBO J. V. 42 14889 2023 JRNL REFN ESSN 1460-2075 JRNL PMID 37953642 JRNL DOI 10.15252/EMBJ.2023114889 REMARK 2 REMARK 2 RESOLUTION. 3.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.850 REMARK 3 NUMBER OF PARTICLES : 93964 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8IZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 14-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036881. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LAC1-LIP1 (LIP1-S74F) COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 ASN A 11 REMARK 465 ASN A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 VAL A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 ARG A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 GLY A 26 REMARK 465 LYS A 27 REMARK 465 ILE A 28 REMARK 465 ASP A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 ASP A 32 REMARK 465 THR A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 SER A 36 REMARK 465 LEU A 37 REMARK 465 GLY A 38 REMARK 465 THR A 39 REMARK 465 MET A 40 REMARK 465 PHE A 41 REMARK 465 GLU A 42 REMARK 465 THR A 43 REMARK 465 LYS A 44 REMARK 465 GLU A 45 REMARK 465 SER A 46 REMARK 465 LYS A 47 REMARK 465 THR A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 LYS A 51 REMARK 465 ARG A 52 REMARK 465 ARG A 53 REMARK 465 MET A 54 REMARK 465 GLN A 55 REMARK 465 ARG A 56 REMARK 465 LEU A 57 REMARK 465 SER A 58 REMARK 465 GLU A 59 REMARK 465 ALA A 60 REMARK 465 THR A 61 REMARK 465 LYS A 62 REMARK 465 ASN A 63 REMARK 465 ASP A 64 REMARK 465 SER A 65 REMARK 465 ASP A 66 REMARK 465 LEU A 67 REMARK 465 VAL A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 GLY A 386 REMARK 465 ILE A 387 REMARK 465 LEU A 388 REMARK 465 LYS A 389 REMARK 465 ASP A 390 REMARK 465 ASP A 391 REMARK 465 ARG A 392 REMARK 465 SER A 393 REMARK 465 ASP A 394 REMARK 465 SER A 395 REMARK 465 GLU A 396 REMARK 465 SER A 397 REMARK 465 ASP A 398 REMARK 465 GLU A 399 REMARK 465 GLU A 400 REMARK 465 SER A 401 REMARK 465 ASP A 402 REMARK 465 GLU A 403 REMARK 465 SER A 404 REMARK 465 SER A 405 REMARK 465 THR A 406 REMARK 465 THR A 407 REMARK 465 PRO A 408 REMARK 465 THR A 409 REMARK 465 ASP A 410 REMARK 465 SER A 411 REMARK 465 THR A 412 REMARK 465 PRO A 413 REMARK 465 THR A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 ASP A 417 REMARK 465 ILE A 418 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 ASP B -18 REMARK 465 TYR B -17 REMARK 465 LYS B -16 REMARK 465 ASP B -15 REMARK 465 ASP B -14 REMARK 465 ASP B -13 REMARK 465 ASP B -12 REMARK 465 LYS B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 PRO B -8 REMARK 465 ASP B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 ASP B -4 REMARK 465 ALA B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 ILE B 7 REMARK 465 ILE B 8 REMARK 465 THR B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 SER B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 LYS B 15 REMARK 465 PRO B 16 REMARK 465 LYS B 17 REMARK 465 PRO B 18 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 ILE C 4 REMARK 465 LYS C 5 REMARK 465 PRO C 6 REMARK 465 SER C 7 REMARK 465 PRO C 8 REMARK 465 SER C 9 REMARK 465 ASN C 10 REMARK 465 ASN C 11 REMARK 465 ASN C 12 REMARK 465 LEU C 13 REMARK 465 LYS C 14 REMARK 465 VAL C 15 REMARK 465 ARG C 16 REMARK 465 SER C 17 REMARK 465 ARG C 18 REMARK 465 PRO C 19 REMARK 465 ARG C 20 REMARK 465 ARG C 21 REMARK 465 LYS C 22 REMARK 465 SER C 23 REMARK 465 SER C 24 REMARK 465 ILE C 25 REMARK 465 GLY C 26 REMARK 465 LYS C 27 REMARK 465 ILE C 28 REMARK 465 ASP C 29 REMARK 465 LEU C 30 REMARK 465 GLY C 31 REMARK 465 ASP C 32 REMARK 465 THR C 33 REMARK 465 VAL C 34 REMARK 465 PRO C 35 REMARK 465 SER C 36 REMARK 465 LEU C 37 REMARK 465 GLY C 38 REMARK 465 THR C 39 REMARK 465 MET C 40 REMARK 465 PHE C 41 REMARK 465 GLU C 42 REMARK 465 THR C 43 REMARK 465 LYS C 44 REMARK 465 GLU C 45 REMARK 465 SER C 46 REMARK 465 LYS C 47 REMARK 465 THR C 48 REMARK 465 ALA C 49 REMARK 465 ALA C 50 REMARK 465 LYS C 51 REMARK 465 ARG C 52 REMARK 465 ARG C 53 REMARK 465 MET C 54 REMARK 465 GLN C 55 REMARK 465 ARG C 56 REMARK 465 LEU C 57 REMARK 465 SER C 58 REMARK 465 GLU C 59 REMARK 465 ALA C 60 REMARK 465 THR C 61 REMARK 465 LYS C 62 REMARK 465 ASN C 63 REMARK 465 ASP C 64 REMARK 465 SER C 65 REMARK 465 ASP C 66 REMARK 465 LEU C 67 REMARK 465 VAL C 68 REMARK 465 LYS C 69 REMARK 465 LYS C 70 REMARK 465 GLY C 386 REMARK 465 ILE C 387 REMARK 465 LEU C 388 REMARK 465 LYS C 389 REMARK 465 ASP C 390 REMARK 465 ASP C 391 REMARK 465 ARG C 392 REMARK 465 SER C 393 REMARK 465 ASP C 394 REMARK 465 SER C 395 REMARK 465 GLU C 396 REMARK 465 SER C 397 REMARK 465 ASP C 398 REMARK 465 GLU C 399 REMARK 465 GLU C 400 REMARK 465 SER C 401 REMARK 465 ASP C 402 REMARK 465 GLU C 403 REMARK 465 SER C 404 REMARK 465 SER C 405 REMARK 465 THR C 406 REMARK 465 THR C 407 REMARK 465 PRO C 408 REMARK 465 THR C 409 REMARK 465 ASP C 410 REMARK 465 SER C 411 REMARK 465 THR C 412 REMARK 465 PRO C 413 REMARK 465 THR C 414 REMARK 465 LYS C 415 REMARK 465 LYS C 416 REMARK 465 ASP C 417 REMARK 465 ILE C 418 REMARK 465 MET D -20 REMARK 465 ALA D -19 REMARK 465 ASP D -18 REMARK 465 TYR D -17 REMARK 465 LYS D -16 REMARK 465 ASP D -15 REMARK 465 ASP D -14 REMARK 465 ASP D -13 REMARK 465 ASP D -12 REMARK 465 LYS D -11 REMARK 465 SER D -10 REMARK 465 GLY D -9 REMARK 465 PRO D -8 REMARK 465 ASP D -7 REMARK 465 GLU D -6 REMARK 465 VAL D -5 REMARK 465 ASP D -4 REMARK 465 ALA D -3 REMARK 465 SER D -2 REMARK 465 GLY D -1 REMARK 465 ARG D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 PRO D 4 REMARK 465 THR D 5 REMARK 465 PRO D 6 REMARK 465 ILE D 7 REMARK 465 ILE D 8 REMARK 465 THR D 9 REMARK 465 THR D 10 REMARK 465 LYS D 11 REMARK 465 SER D 12 REMARK 465 ALA D 13 REMARK 465 ALA D 14 REMARK 465 LYS D 15 REMARK 465 PRO D 16 REMARK 465 LYS D 17 REMARK 465 PRO D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU C 77 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 103 OH TYR D 148 1.94 REMARK 500 OH TYR B 148 O ILE D 103 1.95 REMARK 500 OG SER A 186 OD1 ASP A 283 2.17 REMARK 500 OG SER C 186 OD1 ASP C 283 2.17 REMARK 500 O GLN C 176 OG SER C 290 2.17 REMARK 500 O GLN A 176 OG SER A 290 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 343 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 CYS B 75 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 PHE C 343 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 CYS D 75 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 163 -1.14 68.46 REMARK 500 SER A 166 -165.44 -160.35 REMARK 500 TRP A 200 125.73 -37.78 REMARK 500 ARG A 209 -118.39 -92.66 REMARK 500 PRO A 212 44.88 -79.34 REMARK 500 LEU A 242 -71.58 -59.34 REMARK 500 GLU A 243 -41.66 -136.51 REMARK 500 PRO A 245 -126.88 -60.10 REMARK 500 ASP A 248 66.58 75.85 REMARK 500 HIS A 270 -6.35 78.46 REMARK 500 PHE A 343 9.51 -44.05 REMARK 500 THR A 345 25.22 -67.71 REMARK 500 GLN A 346 63.62 33.63 REMARK 500 TYR A 348 34.98 -87.60 REMARK 500 CYS A 350 -159.92 -150.89 REMARK 500 ILE A 352 -62.97 -108.79 REMARK 500 ASN B 47 78.39 -105.10 REMARK 500 LYS B 120 -2.44 60.75 REMARK 500 ALA B 143 -72.07 -60.52 REMARK 500 HIS C 163 -1.13 68.42 REMARK 500 SER C 166 -165.40 -160.32 REMARK 500 TRP C 200 125.67 -37.78 REMARK 500 ARG C 209 -117.97 -92.02 REMARK 500 PRO C 212 44.91 -79.36 REMARK 500 LEU C 242 -71.54 -59.38 REMARK 500 GLU C 243 -41.62 -136.53 REMARK 500 PRO C 245 -126.89 -60.15 REMARK 500 ASP C 248 66.62 75.77 REMARK 500 HIS C 270 -6.34 78.47 REMARK 500 PHE C 343 9.53 -44.06 REMARK 500 THR C 345 25.25 -67.71 REMARK 500 GLN C 346 63.66 33.57 REMARK 500 TYR C 348 35.05 -87.66 REMARK 500 CYS C 350 -159.93 -150.87 REMARK 500 ILE C 352 -62.96 -108.78 REMARK 500 ASN D 47 78.33 -105.06 REMARK 500 LYS D 120 -2.44 60.75 REMARK 500 ALA D 143 -72.02 -60.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6PL B 201 REMARK 610 6PL D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-35863 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE LAC1-LIP1 (LIP1-S74F) COMPLEX DBREF 8IZF A 1 418 UNP P28496 LAC1_YEAST 1 418 DBREF 8IZF B 1 150 UNP Q03579 LIP1_YEAST 1 150 DBREF 8IZF C 1 418 UNP P28496 LAC1_YEAST 1 418 DBREF 8IZF D 1 150 UNP Q03579 LIP1_YEAST 1 150 SEQADV 8IZF MET B -20 UNP Q03579 INITIATING METHIONINE SEQADV 8IZF ALA B -19 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -18 UNP Q03579 EXPRESSION TAG SEQADV 8IZF TYR B -17 UNP Q03579 EXPRESSION TAG SEQADV 8IZF LYS B -16 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -15 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -14 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -13 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -12 UNP Q03579 EXPRESSION TAG SEQADV 8IZF LYS B -11 UNP Q03579 EXPRESSION TAG SEQADV 8IZF SER B -10 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLY B -9 UNP Q03579 EXPRESSION TAG SEQADV 8IZF PRO B -8 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -7 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLU B -6 UNP Q03579 EXPRESSION TAG SEQADV 8IZF VAL B -5 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP B -4 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ALA B -3 UNP Q03579 EXPRESSION TAG SEQADV 8IZF SER B -2 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLY B -1 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ARG B 0 UNP Q03579 EXPRESSION TAG SEQADV 8IZF PHE B 74 UNP Q03579 SER 74 ENGINEERED MUTATION SEQADV 8IZF MET D -20 UNP Q03579 INITIATING METHIONINE SEQADV 8IZF ALA D -19 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -18 UNP Q03579 EXPRESSION TAG SEQADV 8IZF TYR D -17 UNP Q03579 EXPRESSION TAG SEQADV 8IZF LYS D -16 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -15 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -14 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -13 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -12 UNP Q03579 EXPRESSION TAG SEQADV 8IZF LYS D -11 UNP Q03579 EXPRESSION TAG SEQADV 8IZF SER D -10 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLY D -9 UNP Q03579 EXPRESSION TAG SEQADV 8IZF PRO D -8 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -7 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLU D -6 UNP Q03579 EXPRESSION TAG SEQADV 8IZF VAL D -5 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ASP D -4 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ALA D -3 UNP Q03579 EXPRESSION TAG SEQADV 8IZF SER D -2 UNP Q03579 EXPRESSION TAG SEQADV 8IZF GLY D -1 UNP Q03579 EXPRESSION TAG SEQADV 8IZF ARG D 0 UNP Q03579 EXPRESSION TAG SEQADV 8IZF PHE D 74 UNP Q03579 SER 74 ENGINEERED MUTATION SEQRES 1 A 418 MET SER THR ILE LYS PRO SER PRO SER ASN ASN ASN LEU SEQRES 2 A 418 LYS VAL ARG SER ARG PRO ARG ARG LYS SER SER ILE GLY SEQRES 3 A 418 LYS ILE ASP LEU GLY ASP THR VAL PRO SER LEU GLY THR SEQRES 4 A 418 MET PHE GLU THR LYS GLU SER LYS THR ALA ALA LYS ARG SEQRES 5 A 418 ARG MET GLN ARG LEU SER GLU ALA THR LYS ASN ASP SER SEQRES 6 A 418 ASP LEU VAL LYS LYS ILE TRP PHE SER PHE ARG GLU ILE SEQRES 7 A 418 SER TYR ARG HIS ALA TRP ILE ALA PRO LEU MET ILE LEU SEQRES 8 A 418 ILE ALA VAL TYR SER ALA TYR PHE THR SER GLY ASN THR SEQRES 9 A 418 THR LYS THR ASN VAL LEU HIS ARG PHE VAL ALA VAL SER SEQRES 10 A 418 TYR GLN ILE GLY ASP THR ASN ALA TYR GLY LYS GLY ILE SEQRES 11 A 418 ASN ASP LEU CYS PHE VAL PHE TYR TYR MET ILE PHE PHE SEQRES 12 A 418 THR PHE LEU ARG GLU PHE LEU MET ASP VAL VAL ILE ARG SEQRES 13 A 418 PRO PHE ALA ILE ARG LEU HIS VAL THR SER LYS HIS ARG SEQRES 14 A 418 ILE LYS ARG ILE MET GLU GLN MET TYR ALA ILE PHE TYR SEQRES 15 A 418 THR GLY VAL SER GLY PRO PHE GLY ILE TYR CYS MET TYR SEQRES 16 A 418 HIS SER ASP LEU TRP PHE PHE ASN THR LYS ALA MET TYR SEQRES 17 A 418 ARG THR TYR PRO ASP PHE THR ASN PRO PHE LEU PHE LYS SEQRES 18 A 418 VAL PHE TYR LEU GLY GLN ALA ALA PHE TRP ALA GLN GLN SEQRES 19 A 418 ALA CYS ILE LEU VAL LEU GLN LEU GLU LYS PRO ARG LYS SEQRES 20 A 418 ASP HIS ASN GLU LEU THR PHE HIS HIS ILE VAL THR LEU SEQRES 21 A 418 LEU LEU ILE TRP SER SER TYR VAL PHE HIS PHE THR LYS SEQRES 22 A 418 MET GLY LEU PRO ILE TYR ILE THR MET ASP VAL SER ASP SEQRES 23 A 418 PHE LEU LEU SER PHE SER LYS THR LEU ASN TYR LEU ASP SEQRES 24 A 418 SER GLY LEU ALA PHE PHE SER PHE ALA ILE PHE VAL VAL SEQRES 25 A 418 ALA TRP ILE TYR LEU ARG HIS TYR ILE ASN LEU LYS ILE SEQRES 26 A 418 LEU TRP SER VAL LEU THR GLN PHE ARG THR GLU GLY ASN SEQRES 27 A 418 TYR VAL LEU ASN PHE ALA THR GLN GLN TYR LYS CYS TRP SEQRES 28 A 418 ILE SER LEU PRO ILE VAL PHE VAL LEU ILE GLY ALA LEU SEQRES 29 A 418 GLN LEU VAL ASN LEU TYR TRP LEU PHE LEU ILE PHE ARG SEQRES 30 A 418 VAL LEU TYR ARG ILE LEU TRP ARG GLY ILE LEU LYS ASP SEQRES 31 A 418 ASP ARG SER ASP SER GLU SER ASP GLU GLU SER ASP GLU SEQRES 32 A 418 SER SER THR THR PRO THR ASP SER THR PRO THR LYS LYS SEQRES 33 A 418 ASP ILE SEQRES 1 B 171 MET ALA ASP TYR LYS ASP ASP ASP ASP LYS SER GLY PRO SEQRES 2 B 171 ASP GLU VAL ASP ALA SER GLY ARG MET SER GLN PRO THR SEQRES 3 B 171 PRO ILE ILE THR THR LYS SER ALA ALA LYS PRO LYS PRO SEQRES 4 B 171 LYS ILE PHE ASN LEU PHE ARG VAL CYS PHE ILE SER LEU SEQRES 5 B 171 LEU LEU ILE ALA ALA VAL GLU TYR PHE LYS TYR GLY THR SEQRES 6 B 171 ARG ILE ASN TYR GLU TRP PHE HIS CYS THR PRO ILE LYS SEQRES 7 B 171 GLU PRO GLN SER GLY SER VAL ILE LYS LEU TRP ALA ARG SEQRES 8 B 171 GLY GLY PRO PHE CYS ASP LYS ARG GLY GLU TYR LYS THR SEQRES 9 B 171 ILE VAL LYS ARG ILE THR ARG ASP TYR GLU PRO ASN ASP SEQRES 10 B 171 GLU HIS LEU SER PHE CYS ILE ILE GLU ASN ASP ASN VAL SEQRES 11 B 171 PRO PRO VAL HIS TYR PRO ILE HIS GLU ASP LYS GLY GLU SEQRES 12 B 171 PRO GLY TYR VAL ALA TYR VAL GLY TYR ASP THR ASP SER SEQRES 13 B 171 GLU LEU VAL GLN GLU LEU CYS ALA ASP SER THR ILE TYR SEQRES 14 B 171 HIS MET SEQRES 1 C 418 MET SER THR ILE LYS PRO SER PRO SER ASN ASN ASN LEU SEQRES 2 C 418 LYS VAL ARG SER ARG PRO ARG ARG LYS SER SER ILE GLY SEQRES 3 C 418 LYS ILE ASP LEU GLY ASP THR VAL PRO SER LEU GLY THR SEQRES 4 C 418 MET PHE GLU THR LYS GLU SER LYS THR ALA ALA LYS ARG SEQRES 5 C 418 ARG MET GLN ARG LEU SER GLU ALA THR LYS ASN ASP SER SEQRES 6 C 418 ASP LEU VAL LYS LYS ILE TRP PHE SER PHE ARG GLU ILE SEQRES 7 C 418 SER TYR ARG HIS ALA TRP ILE ALA PRO LEU MET ILE LEU SEQRES 8 C 418 ILE ALA VAL TYR SER ALA TYR PHE THR SER GLY ASN THR SEQRES 9 C 418 THR LYS THR ASN VAL LEU HIS ARG PHE VAL ALA VAL SER SEQRES 10 C 418 TYR GLN ILE GLY ASP THR ASN ALA TYR GLY LYS GLY ILE SEQRES 11 C 418 ASN ASP LEU CYS PHE VAL PHE TYR TYR MET ILE PHE PHE SEQRES 12 C 418 THR PHE LEU ARG GLU PHE LEU MET ASP VAL VAL ILE ARG SEQRES 13 C 418 PRO PHE ALA ILE ARG LEU HIS VAL THR SER LYS HIS ARG SEQRES 14 C 418 ILE LYS ARG ILE MET GLU GLN MET TYR ALA ILE PHE TYR SEQRES 15 C 418 THR GLY VAL SER GLY PRO PHE GLY ILE TYR CYS MET TYR SEQRES 16 C 418 HIS SER ASP LEU TRP PHE PHE ASN THR LYS ALA MET TYR SEQRES 17 C 418 ARG THR TYR PRO ASP PHE THR ASN PRO PHE LEU PHE LYS SEQRES 18 C 418 VAL PHE TYR LEU GLY GLN ALA ALA PHE TRP ALA GLN GLN SEQRES 19 C 418 ALA CYS ILE LEU VAL LEU GLN LEU GLU LYS PRO ARG LYS SEQRES 20 C 418 ASP HIS ASN GLU LEU THR PHE HIS HIS ILE VAL THR LEU SEQRES 21 C 418 LEU LEU ILE TRP SER SER TYR VAL PHE HIS PHE THR LYS SEQRES 22 C 418 MET GLY LEU PRO ILE TYR ILE THR MET ASP VAL SER ASP SEQRES 23 C 418 PHE LEU LEU SER PHE SER LYS THR LEU ASN TYR LEU ASP SEQRES 24 C 418 SER GLY LEU ALA PHE PHE SER PHE ALA ILE PHE VAL VAL SEQRES 25 C 418 ALA TRP ILE TYR LEU ARG HIS TYR ILE ASN LEU LYS ILE SEQRES 26 C 418 LEU TRP SER VAL LEU THR GLN PHE ARG THR GLU GLY ASN SEQRES 27 C 418 TYR VAL LEU ASN PHE ALA THR GLN GLN TYR LYS CYS TRP SEQRES 28 C 418 ILE SER LEU PRO ILE VAL PHE VAL LEU ILE GLY ALA LEU SEQRES 29 C 418 GLN LEU VAL ASN LEU TYR TRP LEU PHE LEU ILE PHE ARG SEQRES 30 C 418 VAL LEU TYR ARG ILE LEU TRP ARG GLY ILE LEU LYS ASP SEQRES 31 C 418 ASP ARG SER ASP SER GLU SER ASP GLU GLU SER ASP GLU SEQRES 32 C 418 SER SER THR THR PRO THR ASP SER THR PRO THR LYS LYS SEQRES 33 C 418 ASP ILE SEQRES 1 D 171 MET ALA ASP TYR LYS ASP ASP ASP ASP LYS SER GLY PRO SEQRES 2 D 171 ASP GLU VAL ASP ALA SER GLY ARG MET SER GLN PRO THR SEQRES 3 D 171 PRO ILE ILE THR THR LYS SER ALA ALA LYS PRO LYS PRO SEQRES 4 D 171 LYS ILE PHE ASN LEU PHE ARG VAL CYS PHE ILE SER LEU SEQRES 5 D 171 LEU LEU ILE ALA ALA VAL GLU TYR PHE LYS TYR GLY THR SEQRES 6 D 171 ARG ILE ASN TYR GLU TRP PHE HIS CYS THR PRO ILE LYS SEQRES 7 D 171 GLU PRO GLN SER GLY SER VAL ILE LYS LEU TRP ALA ARG SEQRES 8 D 171 GLY GLY PRO PHE CYS ASP LYS ARG GLY GLU TYR LYS THR SEQRES 9 D 171 ILE VAL LYS ARG ILE THR ARG ASP TYR GLU PRO ASN ASP SEQRES 10 D 171 GLU HIS LEU SER PHE CYS ILE ILE GLU ASN ASP ASN VAL SEQRES 11 D 171 PRO PRO VAL HIS TYR PRO ILE HIS GLU ASP LYS GLY GLU SEQRES 12 D 171 PRO GLY TYR VAL ALA TYR VAL GLY TYR ASP THR ASP SER SEQRES 13 D 171 GLU LEU VAL GLN GLU LEU CYS ALA ASP SER THR ILE TYR SEQRES 14 D 171 HIS MET HET 6PL B 201 40 HET 6PL D 201 40 HETNAM 6PL (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7- HETNAM 2 6PL [(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4- HETNAM 3 6PL PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE HETSYN 6PL 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 5 6PL 2(C42 H85 N O8 P 1+) HELIX 1 AA1 ILE A 71 HIS A 82 1 12 HELIX 2 AA2 TRP A 84 THR A 100 1 17 HELIX 3 AA3 VAL A 109 ALA A 115 1 7 HELIX 4 AA4 ILE A 130 LEU A 162 1 33 HELIX 5 AA5 LYS A 167 HIS A 196 1 30 HELIX 6 AA6 LYS A 205 ARG A 209 5 5 HELIX 7 AA7 PRO A 217 GLN A 241 1 25 HELIX 8 AA8 HIS A 249 PHE A 269 1 21 HELIX 9 AA9 GLY A 275 LEU A 298 1 24 HELIX 10 AB1 LEU A 302 THR A 335 1 34 HELIX 11 AB2 ILE A 352 TRP A 384 1 33 HELIX 12 AB3 ILE B 20 ASN B 47 1 28 HELIX 13 AB4 TYR B 48 HIS B 52 1 5 HELIX 14 AB5 ASP B 76 TYR B 92 1 17 HELIX 15 AB6 ASP B 134 CYS B 142 1 9 HELIX 16 AB7 TRP C 72 HIS C 82 1 11 HELIX 17 AB8 TRP C 84 THR C 100 1 17 HELIX 18 AB9 VAL C 109 ALA C 115 1 7 HELIX 19 AC1 ILE C 130 LEU C 162 1 33 HELIX 20 AC2 LYS C 167 HIS C 196 1 30 HELIX 21 AC3 LYS C 205 ARG C 209 5 5 HELIX 22 AC4 PRO C 217 GLN C 241 1 25 HELIX 23 AC5 HIS C 249 PHE C 269 1 21 HELIX 24 AC6 GLY C 275 LEU C 298 1 24 HELIX 25 AC7 LEU C 302 THR C 335 1 34 HELIX 26 AC8 ILE C 352 TRP C 384 1 33 HELIX 27 AC9 ILE D 20 ASN D 47 1 28 HELIX 28 AD1 TYR D 48 HIS D 52 1 5 HELIX 29 AD2 ASP D 76 TYR D 92 1 17 HELIX 30 AD3 ASP D 134 CYS D 142 1 9 SHEET 1 AA1 4 CYS B 53 PRO B 59 0 SHEET 2 AA1 4 ILE B 65 GLY B 71 -1 O ARG B 70 N THR B 54 SHEET 3 AA1 4 VAL B 126 TYR B 131 -1 O ALA B 127 N LEU B 67 SHEET 4 AA1 4 LEU B 99 ILE B 104 -1 N CYS B 102 O TYR B 128 SHEET 1 AA2 4 CYS D 53 PRO D 59 0 SHEET 2 AA2 4 ILE D 65 GLY D 71 -1 O ARG D 70 N THR D 54 SHEET 3 AA2 4 VAL D 126 TYR D 131 -1 O ALA D 127 N LEU D 67 SHEET 4 AA2 4 LEU D 99 ILE D 104 -1 N CYS D 102 O TYR D 128 SSBOND 1 CYS B 53 CYS B 75 1555 1555 2.03 SSBOND 2 CYS B 102 CYS B 142 1555 1555 2.03 SSBOND 3 CYS D 53 CYS D 75 1555 1555 2.03 SSBOND 4 CYS D 102 CYS D 142 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000