HEADER BIOSYNTHETIC PROTEIN 10-APR-23 8J0A TITLE ROBUST DESIGN OF EFFECTIVE ALLOSTERIC ACTIVATOR UBV R4 FOR RSP5 E3 TITLE 2 LIGASE USING THE MACHINE-LEARNING TOOL PROTEINMPNN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN VARIANT R4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS UBIQUITIN VARIANT, DEEP-LEARNING, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-F.LIN,Y.-J.HSIEH,H.-W.KAO,T.-P.KO,K.-P.WU REVDAT 3 30-AUG-23 8J0A 1 JRNL REVDAT 2 16-AUG-23 8J0A 1 JRNL REVDAT 1 09-AUG-23 8J0A 0 JRNL AUTH H.W.KAO,W.L.LU,M.R.HO,Y.F.LIN,Y.J.HSIEH,T.P.KO, JRNL AUTH 2 S.T.DANNY HSU,K.P.WU JRNL TITL ROBUST DESIGN OF EFFECTIVE ALLOSTERIC ACTIVATORS FOR RSP5 E3 JRNL TITL 2 LIGASE USING THE MACHINE LEARNING TOOL PROTEINMPNN. JRNL REF ACS SYNTH BIOL V. 12 2310 2023 JRNL REFN ESSN 2161-5063 JRNL PMID 37556858 JRNL DOI 10.1021/ACSSYNBIO.3C00042 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 5198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5600 - 3.7800 0.98 2539 131 0.2022 0.2293 REMARK 3 2 3.7700 - 3.0000 0.99 2402 126 0.2925 0.2627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.285 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1288 REMARK 3 ANGLE : 0.570 1733 REMARK 3 CHIRALITY : 0.048 206 REMARK 3 PLANARITY : 0.004 215 REMARK 3 DIHEDRAL : 15.531 517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.616 25.699 8.269 REMARK 3 T TENSOR REMARK 3 T11: 0.9387 T22: 1.0185 REMARK 3 T33: 0.9504 T12: 0.2386 REMARK 3 T13: -0.0351 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.1033 L22: 6.5237 REMARK 3 L33: 0.3857 L12: 2.0788 REMARK 3 L13: 0.2094 L23: -1.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.2447 S12: 0.1586 S13: -1.0842 REMARK 3 S21: -0.7366 S22: -0.0044 S23: 0.4694 REMARK 3 S31: 0.1375 S32: -0.1649 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.415 30.005 12.185 REMARK 3 T TENSOR REMARK 3 T11: 0.9499 T22: 0.9809 REMARK 3 T33: 0.9298 T12: 0.0545 REMARK 3 T13: 0.0037 T23: 0.0908 REMARK 3 L TENSOR REMARK 3 L11: 0.6067 L22: 0.3360 REMARK 3 L33: 0.4158 L12: -0.2422 REMARK 3 L13: -0.4921 L23: 0.2674 REMARK 3 S TENSOR REMARK 3 S11: 0.2325 S12: -0.0586 S13: -0.8315 REMARK 3 S21: 0.1128 S22: 0.1768 S23: 0.9699 REMARK 3 S31: 0.6620 S32: -1.5069 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 35:56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.461 36.971 11.026 REMARK 3 T TENSOR REMARK 3 T11: 0.7931 T22: 0.9692 REMARK 3 T33: 0.7472 T12: 0.0903 REMARK 3 T13: -0.0971 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 2.0555 L22: 3.1057 REMARK 3 L33: 5.3078 L12: 0.9151 REMARK 3 L13: 2.8202 L23: 3.2432 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: 0.9197 S13: 0.3127 REMARK 3 S21: -0.3013 S22: 0.2349 S23: 0.7611 REMARK 3 S31: -0.4117 S32: 0.1614 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 57:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.629 32.764 12.743 REMARK 3 T TENSOR REMARK 3 T11: 0.7852 T22: 0.7720 REMARK 3 T33: 0.8827 T12: 0.0714 REMARK 3 T13: -0.1670 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 7.3606 L22: 7.0790 REMARK 3 L33: 1.4671 L12: -1.5118 REMARK 3 L13: 0.2753 L23: -0.3893 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: 0.0070 S13: -0.4018 REMARK 3 S21: -0.2251 S22: -0.1389 S23: -0.3609 REMARK 3 S31: -0.0665 S32: 0.9247 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.692 45.879 16.809 REMARK 3 T TENSOR REMARK 3 T11: 1.0074 T22: 1.1592 REMARK 3 T33: 1.0689 T12: 0.0272 REMARK 3 T13: 0.1053 T23: 0.1553 REMARK 3 L TENSOR REMARK 3 L11: 2.0085 L22: 1.1824 REMARK 3 L33: 1.5693 L12: 0.0035 REMARK 3 L13: -1.7232 L23: 0.3313 REMARK 3 S TENSOR REMARK 3 S11: -0.6549 S12: 1.8757 S13: 1.8829 REMARK 3 S21: -0.3910 S22: -0.2616 S23: -0.8582 REMARK 3 S31: 0.4237 S32: 0.9893 S33: 0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 12:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.895 48.440 26.299 REMARK 3 T TENSOR REMARK 3 T11: 0.9546 T22: 1.1355 REMARK 3 T33: 1.3871 T12: 0.0235 REMARK 3 T13: -0.1721 T23: 0.0925 REMARK 3 L TENSOR REMARK 3 L11: 1.1154 L22: 0.4273 REMARK 3 L33: 3.1106 L12: -0.6903 REMARK 3 L13: -1.8636 L23: 1.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: -0.2263 S13: 0.1713 REMARK 3 S21: 0.3789 S22: 0.1690 S23: -1.3102 REMARK 3 S31: -0.3623 S32: 0.3199 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 35:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.969 40.056 24.247 REMARK 3 T TENSOR REMARK 3 T11: 0.8946 T22: 0.9252 REMARK 3 T33: 1.2132 T12: 0.1026 REMARK 3 T13: -0.0336 T23: 0.1526 REMARK 3 L TENSOR REMARK 3 L11: 6.1604 L22: 2.9823 REMARK 3 L33: 2.9639 L12: 2.0288 REMARK 3 L13: 4.1188 L23: 0.6384 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.1835 S13: -0.7003 REMARK 3 S21: 0.3804 S22: -0.0157 S23: -0.6475 REMARK 3 S31: 0.5624 S32: 0.6657 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 72:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.301 47.453 15.959 REMARK 3 T TENSOR REMARK 3 T11: 1.0426 T22: 0.6364 REMARK 3 T33: 1.0642 T12: -0.1099 REMARK 3 T13: 0.0836 T23: 0.2493 REMARK 3 L TENSOR REMARK 3 L11: 6.5981 L22: 4.7949 REMARK 3 L33: 6.4936 L12: -2.9510 REMARK 3 L13: 2.2451 L23: 3.4531 REMARK 3 S TENSOR REMARK 3 S11: -1.4134 S12: 0.9877 S13: -2.5396 REMARK 3 S21: -0.4737 S22: -0.6552 S23: 0.8166 REMARK 3 S31: -3.0503 S32: 1.5560 S33: -1.9944 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:117 ) OR ( CHAIN B AND RESID REMARK 3 201:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.081 36.161 13.710 REMARK 3 T TENSOR REMARK 3 T11: 0.6034 T22: 0.7076 REMARK 3 T33: 0.4188 T12: -0.0100 REMARK 3 T13: -0.0320 T23: 0.0885 REMARK 3 L TENSOR REMARK 3 L11: 3.1412 L22: 2.8080 REMARK 3 L33: 0.8915 L12: 0.7503 REMARK 3 L13: 1.4234 L23: -0.4256 REMARK 3 S TENSOR REMARK 3 S11: 0.3850 S12: -0.8429 S13: -0.0386 REMARK 3 S21: 0.5562 S22: -0.2316 S23: -0.2231 REMARK 3 S31: -0.1721 S32: -0.6040 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 0 through 77) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5198 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% MPD, 2.5M AMMONIUM SULFATE, PH 7.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.46700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.46700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.46700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.46700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 23.46700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.46700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 ARG A 78 REMARK 465 MET B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 SER B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 GLU B -10 REMARK 465 ASN B -9 REMARK 465 LEU B -8 REMARK 465 TYR B -7 REMARK 465 PHE B -6 REMARK 465 GLN B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 9 11.01 -69.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 117 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B 212 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 213 DISTANCE = 8.92 ANGSTROMS DBREF 8J0A A -24 78 PDB 8J0A 8J0A -24 78 DBREF 8J0A B -24 78 PDB 8J0A 8J0A -24 78 SEQRES 1 A 103 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 103 GLY GLU ASN LEU TYR PHE GLN GLY SER GLY GLY SER MET SEQRES 3 A 103 THR ILE TYR VAL LYS THR GLN ASP GLY LYS ILE ILE LYS SEQRES 4 A 103 LEU GLU VAL ASN ASP ASP ASP THR ILE LEU ASN VAL LYS SEQRES 5 A 103 LYS LYS ILE GLU GLU LYS THR GLY ILE PRO PRO GLU ASP SEQRES 6 A 103 GLN ILE LEU ILE TYR LYS GLY LYS VAL LEU GLU ASP ASP SEQRES 7 A 103 LYS THR LEU ALA ASP TYR ASN ILE LYS GLU ASN ASP THR SEQRES 8 A 103 LEU TYR LEU VAL LYS ARG LEU LYS SER PRO GLU ARG SEQRES 1 B 103 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 103 GLY GLU ASN LEU TYR PHE GLN GLY SER GLY GLY SER MET SEQRES 3 B 103 THR ILE TYR VAL LYS THR GLN ASP GLY LYS ILE ILE LYS SEQRES 4 B 103 LEU GLU VAL ASN ASP ASP ASP THR ILE LEU ASN VAL LYS SEQRES 5 B 103 LYS LYS ILE GLU GLU LYS THR GLY ILE PRO PRO GLU ASP SEQRES 6 B 103 GLN ILE LEU ILE TYR LYS GLY LYS VAL LEU GLU ASP ASP SEQRES 7 B 103 LYS THR LEU ALA ASP TYR ASN ILE LYS GLU ASN ASP THR SEQRES 8 B 103 LEU TYR LEU VAL LYS ARG LEU LYS SER PRO GLU ARG HET SO4 B 101 5 HET SO4 B 102 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *30(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 GLU A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR B 22 GLY B 35 1 14 HELIX 5 AA5 PRO B 37 GLU B 39 5 3 HELIX 6 AA6 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 5 ILE A 12 ASN A 18 0 SHEET 2 AA1 5 SER A 0 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 THR A 66 LYS A 71 1 O LEU A 69 N LYS A 6 SHEET 4 AA1 5 GLN A 41 TYR A 45 -1 N ILE A 44 O TYR A 68 SHEET 5 AA1 5 LYS A 48 VAL A 49 -1 O LYS A 48 N TYR A 45 SHEET 1 AA2 5 ILE B 12 VAL B 17 0 SHEET 2 AA2 5 MET B 1 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA2 5 THR B 66 LYS B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 TYR B 45 -1 N ILE B 44 O TYR B 68 SHEET 5 AA2 5 LYS B 48 VAL B 49 -1 O LYS B 48 N TYR B 45 CRYST1 133.111 133.111 46.934 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007513 0.004337 0.000000 0.00000 SCALE2 0.000000 0.008675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021307 0.00000 MTRIX1 1 0.149158 -0.636467 -0.756744 67.24464 1 MTRIX2 1 -0.716234 -0.597179 0.361090 79.09458 1 MTRIX3 1 -0.681733 0.488146 -0.544934 33.00987 1