HEADER FLUORESCENT PROTEIN 14-APR-23 8J2H TITLE CRYSTAL STRUCTURE OF A BRIGHT GREEN FLUORESCENT PROTEIN (STAYGOLD) TITLE 2 WITH SINGLE MUTATION (N137A) IN JELLYFISH CYTAEIS UCHIDAE FROM TITLE 3 BIORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAYGOLD(N137A); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTAEIS UCHIDAE; SOURCE 3 ORGANISM_TAXID: 1254443; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WU,F.WANG,W.GUI,W.CHENG,Y.YANG REVDAT 1 13-DEC-23 8J2H 0 JRNL AUTH J.WU,F.WANG,W.GUI,W.CHENG,Y.YANG JRNL TITL CRYSTAL STRUCTURE OF A BRIGHT GREEN FLUORESCENT PROTEIN JRNL TITL 2 (STAYGOLD) IN JELLYFISH CYTAEIS UCHIDAE FROM BIORTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.245 REMARK 3 FREE R VALUE TEST SET COUNT : 3478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39900 REMARK 3 B22 (A**2) : 0.39900 REMARK 3 B33 (A**2) : -1.29400 REMARK 3 B12 (A**2) : 0.19900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3734 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3338 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5077 ; 1.828 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7799 ; 1.441 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 7.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;33.191 ;24.010 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;13.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4272 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 616 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 75 ; 0.244 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1641 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 366 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.186 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 1.737 ; 1.598 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1755 ; 1.732 ; 1.597 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2200 ; 2.680 ; 2.387 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2201 ; 2.682 ; 2.387 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 3.410 ; 1.964 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1979 ; 3.409 ; 1.965 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2853 ; 5.354 ; 2.783 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2854 ; 5.353 ; 2.784 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8J2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300035608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.06100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.54267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.08533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.31400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.85667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.77133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 GLY A -25 REMARK 465 SER A -24 REMARK 465 SER A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 TRP A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 PRO A -13 REMARK 465 GLN A -12 REMARK 465 PHE A -11 REMARK 465 GLU A -10 REMARK 465 LYS A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET B -26 REMARK 465 GLY B -25 REMARK 465 SER B -24 REMARK 465 SER B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 TRP B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 PRO B -13 REMARK 465 GLN B -12 REMARK 465 PHE B -11 REMARK 465 GLU B -10 REMARK 465 LYS B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 217 O HOH A 401 2.03 REMARK 500 O HOH A 567 O HOH A 640 2.10 REMARK 500 ND1 HIS B 169 O HOH B 401 2.10 REMARK 500 O HOH A 481 O HOH A 649 2.14 REMARK 500 ND1 HIS A 169 O HOH A 402 2.15 REMARK 500 O HOH A 428 O HOH A 618 2.15 REMARK 500 O HOH A 513 O HOH A 558 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 HIS A 30 NH2 ARG B 204 2544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR B 84 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 -156.80 -146.82 REMARK 500 ASP B 93 -158.09 -150.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 6.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 76 O REMARK 620 2 MET A 78 O 94.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 76 O REMARK 620 2 MET B 78 O 95.8 REMARK 620 N 1 DBREF 8J2H A -26 217 PDB 8J2H 8J2H -26 217 DBREF 8J2H B -26 217 PDB 8J2H 8J2H -26 217 SEQRES 1 A 242 MET GLY SER SER HIS HIS HIS HIS HIS HIS TRP SER HIS SEQRES 2 A 242 PRO GLN PHE GLU LYS GLU ASN LEU TYR PHE GLN GLY GLY SEQRES 3 A 242 GLY MET ALA SER THR PRO PHE LYS PHE GLN LEU LYS GLY SEQRES 4 A 242 THR ILE ASN GLY LYS SER PHE THR VAL GLU GLY GLU GLY SEQRES 5 A 242 GLU GLY ASN SER HIS GLU GLY SER HIS LYS GLY LYS TYR SEQRES 6 A 242 VAL CYS THR SER GLY LYS LEU PRO MET SER TRP ALA ALA SEQRES 7 A 242 LEU GLY THR SER PHE CR2 MET LYS TYR TYR THR LYS TYR SEQRES 8 A 242 PRO SER GLY LEU LYS ASN TRP PHE HIS GLU VAL MET PRO SEQRES 9 A 242 GLU GLY PHE THR TYR ASP ARG HIS ILE GLN TYR LYS GLY SEQRES 10 A 242 ASP GLY SER ILE HIS ALA LYS HIS GLN HIS PHE MET LYS SEQRES 11 A 242 ASN GLY THR TYR HIS ASN ILE VAL GLU PHE THR GLY GLN SEQRES 12 A 242 ASP PHE LYS GLU ASN SER PRO VAL LEU THR GLY ASP MET SEQRES 13 A 242 ASN VAL SER LEU PRO ALA GLU VAL GLN HIS ILE PRO ARG SEQRES 14 A 242 ASP ASP GLY VAL GLU CYS PRO VAL THR LEU LEU TYR PRO SEQRES 15 A 242 LEU LEU SER ASP LYS SER LYS CYS VAL GLU ALA HIS GLN SEQRES 16 A 242 ASN THR ILE CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO SEQRES 17 A 242 ASP VAL PRO TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SEQRES 18 A 242 SER LYS ASP ASP THR GLU GLU ARG ASP HIS ILE CYS GLN SEQRES 19 A 242 SER GLU THR LEU GLU ALA HIS LEU SEQRES 1 B 242 MET GLY SER SER HIS HIS HIS HIS HIS HIS TRP SER HIS SEQRES 2 B 242 PRO GLN PHE GLU LYS GLU ASN LEU TYR PHE GLN GLY GLY SEQRES 3 B 242 GLY MET ALA SER THR PRO PHE LYS PHE GLN LEU LYS GLY SEQRES 4 B 242 THR ILE ASN GLY LYS SER PHE THR VAL GLU GLY GLU GLY SEQRES 5 B 242 GLU GLY ASN SER HIS GLU GLY SER HIS LYS GLY LYS TYR SEQRES 6 B 242 VAL CYS THR SER GLY LYS LEU PRO MET SER TRP ALA ALA SEQRES 7 B 242 LEU GLY THR SER PHE CR2 MET LYS TYR TYR THR LYS TYR SEQRES 8 B 242 PRO SER GLY LEU LYS ASN TRP PHE HIS GLU VAL MET PRO SEQRES 9 B 242 GLU GLY PHE THR TYR ASP ARG HIS ILE GLN TYR LYS GLY SEQRES 10 B 242 ASP GLY SER ILE HIS ALA LYS HIS GLN HIS PHE MET LYS SEQRES 11 B 242 ASN GLY THR TYR HIS ASN ILE VAL GLU PHE THR GLY GLN SEQRES 12 B 242 ASP PHE LYS GLU ASN SER PRO VAL LEU THR GLY ASP MET SEQRES 13 B 242 ASN VAL SER LEU PRO ALA GLU VAL GLN HIS ILE PRO ARG SEQRES 14 B 242 ASP ASP GLY VAL GLU CYS PRO VAL THR LEU LEU TYR PRO SEQRES 15 B 242 LEU LEU SER ASP LYS SER LYS CYS VAL GLU ALA HIS GLN SEQRES 16 B 242 ASN THR ILE CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO SEQRES 17 B 242 ASP VAL PRO TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SEQRES 18 B 242 SER LYS ASP ASP THR GLU GLU ARG ASP HIS ILE CYS GLN SEQRES 19 B 242 SER GLU THR LEU GLU ALA HIS LEU HET CR2 A 58 19 HET CR2 B 58 19 HET GOL A 301 6 HET GOL A 302 6 HET NA A 303 1 HET GOL B 301 6 HET NA B 302 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 NA 2(NA 1+) FORMUL 8 HOH *533(H2 O) HELIX 1 AA1 TRP A 49 GLY A 53 5 5 HELIX 2 AA2 MET A 60 THR A 64 5 5 HELIX 3 AA3 ASN A 72 VAL A 77 1 6 HELIX 4 AA4 SER A 124 GLY A 129 1 6 HELIX 5 AA5 TRP B 49 GLY B 53 5 5 HELIX 6 AA6 MET B 60 THR B 64 5 5 HELIX 7 AA7 ASN B 72 VAL B 77 1 6 HELIX 8 AA8 SER B 124 GLY B 129 1 6 SHEET 1 AA112 THR A 4 ILE A 14 0 SHEET 2 AA112 LYS A 17 ASN A 28 -1 O PHE A 19 N GLY A 12 SHEET 3 AA112 SER A 33 CYS A 40 -1 O VAL A 39 N GLU A 22 SHEET 4 AA112 HIS A 206 HIS A 216 -1 O ILE A 207 N TYR A 38 SHEET 5 AA112 HIS A 188 SER A 197 -1 N SER A 197 O CYS A 208 SHEET 6 AA112 ALA A 137 ARG A 144 -1 N VAL A 139 O ILE A 190 SHEET 7 AA112 GLY A 147 PRO A 157 -1 O GLU A 149 N ILE A 142 SHEET 8 AA112 CYS A 165 PRO A 176 -1 O GLN A 170 N VAL A 152 SHEET 9 AA112 PHE A 82 TYR A 90 -1 N THR A 83 O LYS A 175 SHEET 10 AA112 SER A 95 LYS A 105 -1 O ILE A 96 N ILE A 88 SHEET 11 AA112 THR A 108 GLN A 118 -1 O HIS A 110 N PHE A 103 SHEET 12 AA112 THR A 4 ILE A 14 1 N GLN A 9 O VAL A 113 SHEET 1 AA212 THR B 4 ILE B 14 0 SHEET 2 AA212 LYS B 17 ASN B 28 -1 O PHE B 19 N GLY B 12 SHEET 3 AA212 SER B 33 CYS B 40 -1 O VAL B 39 N GLU B 22 SHEET 4 AA212 HIS B 206 HIS B 216 -1 O ILE B 207 N TYR B 38 SHEET 5 AA212 HIS B 188 SER B 197 -1 N SER B 197 O CYS B 208 SHEET 6 AA212 ALA B 137 ARG B 144 -1 N VAL B 139 O ILE B 190 SHEET 7 AA212 GLY B 147 PRO B 157 -1 O GLU B 149 N ILE B 142 SHEET 8 AA212 CYS B 165 PRO B 176 -1 O GLN B 170 N VAL B 152 SHEET 9 AA212 PHE B 82 TYR B 90 -1 N GLN B 89 O HIS B 169 SHEET 10 AA212 SER B 95 LYS B 105 -1 O ALA B 98 N ARG B 86 SHEET 11 AA212 THR B 108 GLN B 118 -1 O HIS B 110 N PHE B 103 SHEET 12 AA212 THR B 4 ILE B 14 1 N GLN B 9 O VAL B 113 LINK C PHE A 56 N1 CR2 A 58 1555 1555 1.35 LINK C3 CR2 A 58 N MET A 60 1555 1555 1.31 LINK C PHE B 56 N1 CR2 B 58 1555 1555 1.34 LINK C3 CR2 B 58 N MET B 60 1555 1555 1.32 LINK O GLU A 76 NA NA A 303 1555 1555 2.42 LINK O MET A 78 NA NA A 303 1555 1555 2.47 LINK O GLU B 76 NA NA B 302 1555 1555 2.52 LINK O MET B 78 NA NA B 302 1555 1555 2.41 CISPEP 1 MET A 78 PRO A 79 0 2.45 CISPEP 2 MET B 78 PRO B 79 0 2.51 CRYST1 134.207 134.207 58.628 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007451 0.004302 0.000000 0.00000 SCALE2 0.000000 0.008604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017057 0.00000