HEADER HYDROLASE 18-APR-23 8J3T TITLE COMPLEX STRUCTURE OF HUMAN CYTOMEGALOVIRUS PROTEASE AND A NON-COVALENT TITLE 2 SMALL-MOLECULE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASSEMBLIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEASE; COMPND 5 EC: 3.4.21.97; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETAHERPESVIRUS 5; SOURCE 3 ORGANISM_TAXID: 10359; SOURCE 4 GENE: UL80; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YOSHIDA,Y.SAKO,E.NIKAIDO,T.UEDA,I.KOZONO,Y.ICHIHASHI,A.NAKAHASHI, AUTHOR 2 M.ONISHI,Y.YAMATSU,T.KATO,J.NISHIKAWA,Y.TACHIBANA REVDAT 2 29-NOV-23 8J3T 1 JRNL REVDAT 1 08-NOV-23 8J3T 0 JRNL AUTH S.YOSHIDA,Y.SAKO,E.NIKAIDO,T.UEDA,I.KOZONO,Y.ICHIHASHI, JRNL AUTH 2 A.NAKAHASHI,M.ONISHI,Y.YAMATSU,T.KATO,J.NISHIKAWA, JRNL AUTH 3 Y.TACHIBANA JRNL TITL PEPTIDE-TO-SMALL MOLECULE: DISCOVERY OF NON-COVALENT, JRNL TITL 2 ACTIVE-SITE INHIBITORS OF BETA-HERPESVIRUS PROTEASES. JRNL REF ACS MED.CHEM.LETT. V. 14 1558 2023 JRNL REFN ISSN 1948-5875 JRNL PMID 37974946 JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00359 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3082 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.29000 REMARK 3 B22 (A**2) : 5.29000 REMARK 3 B33 (A**2) : -10.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.010 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.434 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.366 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3261 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2946 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4457 ; 1.755 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6749 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.551 ;22.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;20.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3689 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 706 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1649 ; 5.632 ; 7.932 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1646 ; 5.630 ; 7.929 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2045 ; 8.609 ;11.860 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2045 ; 8.606 ;11.860 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 5.291 ; 8.145 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1613 ; 5.290 ; 8.146 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2413 ; 8.190 ;12.102 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3691 ;11.931 ;93.985 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3692 ;11.929 ;93.993 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8J3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 71.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MES PH 5.5, 0.6 M NACL, 0.097 M REMARK 280 AMMONIUM ACETATE, 0.005 M MGSO4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.51500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.18200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.18200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.75750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.18200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.18200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.27250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.18200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.18200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.75750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.18200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.18200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.27250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 SER A 52 REMARK 465 LEU A 53 REMARK 465 SER A 54 REMARK 465 ARG A 137 REMARK 465 CYS A 138 REMARK 465 ASP A 139 REMARK 465 ASP A 140 REMARK 465 VAL A 141 REMARK 465 GLU A 142 REMARK 465 GLN A 143 REMARK 465 ALA A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLU A 151 REMARK 465 THR A 152 REMARK 465 CYS A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 ALA A 206 REMARK 465 VAL A 207 REMARK 465 ASP A 208 REMARK 465 ALA A 209 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET B 3 REMARK 465 ASP B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 GLN B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 32 REMARK 465 LEU B 33 REMARK 465 LEU B 34 REMARK 465 PRO B 35 REMARK 465 ALA B 45 REMARK 465 GLN B 46 REMARK 465 GLY B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 SER B 52 REMARK 465 LEU B 53 REMARK 465 SER B 54 REMARK 465 VAL B 55 REMARK 465 SER B 135 REMARK 465 ARG B 136 REMARK 465 ARG B 137 REMARK 465 CYS B 138 REMARK 465 ASP B 139 REMARK 465 ASP B 140 REMARK 465 VAL B 141 REMARK 465 GLU B 142 REMARK 465 GLN B 143 REMARK 465 ALA B 144 REMARK 465 THR B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 SER B 148 REMARK 465 GLY B 149 REMARK 465 SER B 150 REMARK 465 GLU B 151 REMARK 465 THR B 152 REMARK 465 ARG B 201 REMARK 465 CYS B 202 REMARK 465 GLY B 203 REMARK 465 SER B 204 REMARK 465 THR B 205 REMARK 465 ALA B 206 REMARK 465 VAL B 207 REMARK 465 ASP B 208 REMARK 465 ALA B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 12 OG1 CG2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 HIS A 44 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 VAL A 55 CG1 CG2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 99 CZ NH1 NH2 REMARK 470 LYS A 103 CE NZ REMARK 470 SER A 113 OG REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 THR A 248 OG1 CG2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 THR B 12 OG1 CG2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 37 CG OD1 OD2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 HIS B 41 CG ND1 CD2 CE1 NE2 REMARK 470 TRP B 42 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 42 CZ3 CH2 REMARK 470 LEU B 43 CG CD1 CD2 REMARK 470 HIS B 44 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 57 CG CD1 CD2 REMARK 470 MET B 75 CG SD CE REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 SER B 113 OG REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 THR B 153 OG1 CG2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 200 CG CD OE1 NE2 REMARK 470 ARG B 215 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 GLN B 243 CG CD OE1 NE2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 188 OD1 ASP B 191 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -121.76 53.47 REMARK 500 ASP A 212 105.74 -53.87 REMARK 500 SER A 216 -163.10 -163.91 REMARK 500 VAL A 247 86.21 -63.85 REMARK 500 GLU A 249 -8.78 73.33 REMARK 500 GLU A 251 23.80 -141.37 REMARK 500 ASP B 24 -33.33 -37.10 REMARK 500 PRO B 27 -173.49 -61.40 REMARK 500 TRP B 42 -8.05 -53.74 REMARK 500 LEU B 43 -81.95 -83.00 REMARK 500 HIS B 63 43.92 77.52 REMARK 500 ASP B 65 -4.51 -56.78 REMARK 500 ALA B 67 52.82 -141.28 REMARK 500 ALA B 74 138.69 -177.71 REMARK 500 GLN B 76 135.16 -176.89 REMARK 500 ARG B 79 -27.44 -35.42 REMARK 500 SER B 108 -32.29 -36.35 REMARK 500 SER B 113 -130.10 53.94 REMARK 500 TYR B 128 63.96 -110.87 REMARK 500 VAL B 163 137.22 -175.26 REMARK 500 GLN B 182 0.81 -63.43 REMARK 500 PRO B 213 31.83 -84.23 REMARK 500 SER B 216 -178.85 -65.87 REMARK 500 GLU B 233 61.53 34.00 REMARK 500 GLN B 243 10.49 -63.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 199 GLN A 200 147.50 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8J3T A 1 256 UNP A0A0G2TMR2_HCMV DBREF2 8J3T A A0A0G2TMR2 1 256 DBREF1 8J3T B 1 256 UNP A0A0G2TMR2_HCMV DBREF2 8J3T B A0A0G2TMR2 1 256 SEQADV 8J3T MET A -6 UNP A0A0G2TMR INITIATING METHIONINE SEQADV 8J3T HIS A -5 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS A -4 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS A -3 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS A -2 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS A -1 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS A 0 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T GLN A 143 UNP A0A0G2TMR ALA 143 ENGINEERED MUTATION SEQADV 8J3T MET B -6 UNP A0A0G2TMR INITIATING METHIONINE SEQADV 8J3T HIS B -5 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS B -4 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS B -3 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS B -2 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS B -1 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T HIS B 0 UNP A0A0G2TMR EXPRESSION TAG SEQADV 8J3T GLN B 143 UNP A0A0G2TMR ALA 143 ENGINEERED MUTATION SEQRES 1 A 263 MET HIS HIS HIS HIS HIS HIS MET THR MET ASP GLU GLN SEQRES 2 A 263 GLN PRO GLN ALA VAL THR PRO VAL TYR VAL GLY GLY PHE SEQRES 3 A 263 LEU ALA ARG TYR ASP GLN SER PRO ASP GLU ALA GLU LEU SEQRES 4 A 263 LEU LEU PRO ARG ASP VAL VAL GLU HIS TRP LEU HIS ALA SEQRES 5 A 263 GLN GLY GLN GLY GLN PRO SER LEU SER VAL ALA LEU PRO SEQRES 6 A 263 LEU ASN ILE ASN HIS ASP ASP THR ALA VAL VAL GLY HIS SEQRES 7 A 263 VAL ALA ALA MET GLN SER VAL ARG ASP GLY LEU PHE CYS SEQRES 8 A 263 LEU GLY CYS VAL THR SER PRO ARG PHE LEU GLU ILE VAL SEQRES 9 A 263 ARG ARG ALA SER GLU LYS SER GLU LEU VAL SER ARG GLY SEQRES 10 A 263 PRO VAL SER PRO LEU GLN PRO ASP LYS VAL VAL GLU PHE SEQRES 11 A 263 LEU SER GLY SER TYR ALA GLY LEU SER LEU SER SER ARG SEQRES 12 A 263 ARG CYS ASP ASP VAL GLU GLN ALA THR SER LEU SER GLY SEQRES 13 A 263 SER GLU THR THR PRO PHE LYS HIS VAL ALA LEU CYS SER SEQRES 14 A 263 VAL GLY ARG ARG ARG GLY THR LEU ALA VAL TYR GLY ARG SEQRES 15 A 263 ASP PRO GLU TRP VAL THR GLN ARG PHE PRO ASP LEU THR SEQRES 16 A 263 ALA ALA ASP ARG ASP GLY LEU ARG ALA GLN TRP GLN ARG SEQRES 17 A 263 CYS GLY SER THR ALA VAL ASP ALA SER GLY ASP PRO PHE SEQRES 18 A 263 ARG SER ASP SER TYR GLY LEU LEU GLY ASN SER VAL ASP SEQRES 19 A 263 ALA LEU TYR ILE ARG GLU ARG LEU PRO LYS LEU ARG TYR SEQRES 20 A 263 ASP LYS GLN LEU VAL GLY VAL THR GLU ARG GLU SER TYR SEQRES 21 A 263 VAL LYS ALA SEQRES 1 B 263 MET HIS HIS HIS HIS HIS HIS MET THR MET ASP GLU GLN SEQRES 2 B 263 GLN PRO GLN ALA VAL THR PRO VAL TYR VAL GLY GLY PHE SEQRES 3 B 263 LEU ALA ARG TYR ASP GLN SER PRO ASP GLU ALA GLU LEU SEQRES 4 B 263 LEU LEU PRO ARG ASP VAL VAL GLU HIS TRP LEU HIS ALA SEQRES 5 B 263 GLN GLY GLN GLY GLN PRO SER LEU SER VAL ALA LEU PRO SEQRES 6 B 263 LEU ASN ILE ASN HIS ASP ASP THR ALA VAL VAL GLY HIS SEQRES 7 B 263 VAL ALA ALA MET GLN SER VAL ARG ASP GLY LEU PHE CYS SEQRES 8 B 263 LEU GLY CYS VAL THR SER PRO ARG PHE LEU GLU ILE VAL SEQRES 9 B 263 ARG ARG ALA SER GLU LYS SER GLU LEU VAL SER ARG GLY SEQRES 10 B 263 PRO VAL SER PRO LEU GLN PRO ASP LYS VAL VAL GLU PHE SEQRES 11 B 263 LEU SER GLY SER TYR ALA GLY LEU SER LEU SER SER ARG SEQRES 12 B 263 ARG CYS ASP ASP VAL GLU GLN ALA THR SER LEU SER GLY SEQRES 13 B 263 SER GLU THR THR PRO PHE LYS HIS VAL ALA LEU CYS SER SEQRES 14 B 263 VAL GLY ARG ARG ARG GLY THR LEU ALA VAL TYR GLY ARG SEQRES 15 B 263 ASP PRO GLU TRP VAL THR GLN ARG PHE PRO ASP LEU THR SEQRES 16 B 263 ALA ALA ASP ARG ASP GLY LEU ARG ALA GLN TRP GLN ARG SEQRES 17 B 263 CYS GLY SER THR ALA VAL ASP ALA SER GLY ASP PRO PHE SEQRES 18 B 263 ARG SER ASP SER TYR GLY LEU LEU GLY ASN SER VAL ASP SEQRES 19 B 263 ALA LEU TYR ILE ARG GLU ARG LEU PRO LYS LEU ARG TYR SEQRES 20 B 263 ASP LYS GLN LEU VAL GLY VAL THR GLU ARG GLU SER TYR SEQRES 21 B 263 VAL LYS ALA HET T1F A 601 51 HET T1F B 601 51 HETNAM T1F (4R)-1-[1-[(S)-[1-CYCLOPENTYL-3-(2-METHYLPHENYL) HETNAM 2 T1F PYRAZOL-4-YL]-(4-METHYLPHENYL)METHYL]-2-OXIDANYLIDENE- HETNAM 3 T1F PYRIDIN-3-YL]-3-METHYL-2-OXIDANYLIDENE-N-(3- HETNAM 4 T1F OXIDANYLIDENE-2-AZABICYCLO[2.2.2]OCTAN-4-YL) HETNAM 5 T1F IMIDAZOLIDINE-4-CARBOXAMIDE FORMUL 3 T1F 2(C40 H45 N7 O4) FORMUL 5 HOH *(H2 O) HELIX 1 AA1 GLU A 29 LEU A 33 5 5 HELIX 2 AA2 PRO A 35 ALA A 45 1 11 HELIX 3 AA3 SER A 90 GLU A 102 1 13 HELIX 4 AA4 SER A 104 GLY A 110 1 7 HELIX 5 AA5 ASP A 118 TYR A 128 1 11 HELIX 6 AA6 ASP A 176 ARG A 183 1 8 HELIX 7 AA7 THR A 188 ALA A 197 1 10 HELIX 8 AA8 ASP A 217 LEU A 229 1 13 HELIX 9 AA9 GLU A 233 GLY A 246 1 14 HELIX 10 AB1 ASP B 37 TRP B 42 1 6 HELIX 11 AB2 SER B 90 GLU B 102 1 13 HELIX 12 AB3 SER B 104 ARG B 109 1 6 HELIX 13 AB4 ASP B 118 TYR B 128 1 11 HELIX 14 AB5 ASP B 176 GLN B 182 1 7 HELIX 15 AB6 THR B 188 GLN B 200 1 13 HELIX 16 AB7 ASP B 217 LEU B 229 1 13 HELIX 17 AB8 GLU B 233 GLY B 246 1 14 SHEET 1 AA1 7 GLY A 130 SER A 135 0 SHEET 2 AA1 7 PHE A 155 CYS A 161 -1 O CYS A 161 N GLY A 130 SHEET 3 AA1 7 PRO A 58 ILE A 61 1 N ASN A 60 O LEU A 160 SHEET 4 AA1 7 ASP A 64 SER A 77 -1 O GLY A 70 N LEU A 59 SHEET 5 AA1 7 GLY A 81 VAL A 88 -1 O CYS A 87 N HIS A 71 SHEET 6 AA1 7 VAL A 14 ARG A 22 -1 N VAL A 16 O GLY A 86 SHEET 7 AA1 7 ALA A 171 GLY A 174 -1 O VAL A 172 N GLY A 17 SHEET 1 AA2 7 GLY B 130 LEU B 133 0 SHEET 2 AA2 7 VAL B 158 CYS B 161 -1 O ALA B 159 N SER B 132 SHEET 3 AA2 7 PRO B 58 ILE B 61 1 N ASN B 60 O LEU B 160 SHEET 4 AA2 7 VAL B 68 VAL B 78 -1 O GLY B 70 N LEU B 59 SHEET 5 AA2 7 GLY B 81 VAL B 88 -1 O CYS B 87 N HIS B 71 SHEET 6 AA2 7 VAL B 14 ARG B 22 -1 N GLY B 18 O CYS B 84 SHEET 7 AA2 7 VAL B 172 GLY B 174 -1 O VAL B 172 N GLY B 17 CRYST1 76.364 76.364 215.030 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004651 0.00000