HEADER HYDROLASE 18-APR-23 8J3Y TITLE CRYSTAL STRUCTURE OF CBM6E E168Q IN COMPLEX WITH OLIGOSACCHARIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYSACCHARIDE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS (STRAIN 2-40 / ATCC SOURCE 3 43961 / DSM 17024); SOURCE 4 ORGANISM_TAXID: 203122; SOURCE 5 GENE: CBM6E, SDE_1445; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,F.LI REVDAT 1 24-APR-24 8J3Y 0 JRNL AUTH C.HE,F.LI JRNL TITL STRUCTURAL INSIGHTS INTO CBM6E FROM SACCHAROPHAGUS DEGRADANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 204336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 10095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1500 - 3.9700 1.00 6954 351 0.1404 0.1522 REMARK 3 2 3.9700 - 3.1500 1.00 6844 382 0.1275 0.1408 REMARK 3 3 3.1500 - 2.7600 1.00 6852 371 0.1506 0.1696 REMARK 3 4 2.7600 - 2.5000 1.00 6849 349 0.1544 0.1798 REMARK 3 5 2.5000 - 2.3200 1.00 6860 344 0.1508 0.1805 REMARK 3 6 2.3200 - 2.1900 1.00 6818 350 0.1445 0.1700 REMARK 3 7 2.1900 - 2.0800 1.00 6807 361 0.1427 0.1688 REMARK 3 8 2.0800 - 1.9900 1.00 6788 376 0.1464 0.1648 REMARK 3 9 1.9900 - 1.9100 1.00 6819 340 0.1484 0.1812 REMARK 3 10 1.9100 - 1.8500 1.00 6785 375 0.1516 0.1655 REMARK 3 11 1.8500 - 1.7900 1.00 6837 351 0.1508 0.1774 REMARK 3 12 1.7900 - 1.7400 1.00 6763 354 0.1498 0.1558 REMARK 3 13 1.7400 - 1.6900 1.00 6784 332 0.1474 0.1604 REMARK 3 14 1.6900 - 1.6500 0.99 6822 343 0.1477 0.1632 REMARK 3 15 1.6500 - 1.6100 1.00 6785 357 0.1473 0.1608 REMARK 3 16 1.6100 - 1.5800 0.99 6678 371 0.1478 0.1520 REMARK 3 17 1.5800 - 1.5500 0.99 6760 355 0.1483 0.1757 REMARK 3 18 1.5500 - 1.5200 0.99 6797 340 0.1547 0.1812 REMARK 3 19 1.5200 - 1.4900 0.99 6747 358 0.1593 0.1741 REMARK 3 20 1.4900 - 1.4600 0.98 6701 346 0.1652 0.1763 REMARK 3 21 1.4600 - 1.4400 0.98 6620 324 0.1748 0.1887 REMARK 3 22 1.4400 - 1.4200 0.97 6629 303 0.1803 0.2086 REMARK 3 23 1.4200 - 1.4000 0.96 6556 375 0.1871 0.2082 REMARK 3 24 1.4000 - 1.3800 0.94 6406 347 0.1958 0.2065 REMARK 3 25 1.3800 - 1.3600 0.91 6212 307 0.1918 0.2276 REMARK 3 26 1.3600 - 1.3400 0.85 5789 292 0.1944 0.2044 REMARK 3 27 1.3400 - 1.3300 0.83 5646 280 0.1962 0.2322 REMARK 3 28 1.3300 - 1.3100 0.78 5351 285 0.2090 0.2262 REMARK 3 29 1.3100 - 1.2900 0.72 4819 254 0.2193 0.2482 REMARK 3 30 1.2900 - 1.2800 0.60 4163 222 0.2232 0.2329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6824 REMARK 3 ANGLE : 0.853 9325 REMARK 3 CHIRALITY : 0.081 1010 REMARK 3 PLANARITY : 0.008 1191 REMARK 3 DIHEDRAL : 11.996 2332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300037161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 215191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS, PH 6.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.90100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 82 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ASP A 278 CG OD1 OD2 REMARK 470 HIS B 82 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 945 O HOH A 1004 2.04 REMARK 500 O HOH A 602 O HOH A 785 2.06 REMARK 500 OE1 GLU B 470 O HOH B 601 2.06 REMARK 500 O HOH A 601 O HOH A 956 2.06 REMARK 500 O HOH A 1084 O HOH B 1181 2.07 REMARK 500 O HOH A 886 O HOH A 1129 2.07 REMARK 500 O HOH A 1172 O HOH B 640 2.08 REMARK 500 O HOH B 1224 O HOH B 1233 2.08 REMARK 500 O HOH B 699 O HOH B 1147 2.08 REMARK 500 O HOH A 1172 O HOH B 1083 2.09 REMARK 500 O HOH A 634 O HOH B 1181 2.09 REMARK 500 O HOH A 766 O HOH B 1181 2.09 REMARK 500 O HOH A 601 O HOH A 697 2.10 REMARK 500 O HOH A 1172 O HOH B 673 2.10 REMARK 500 O HOH A 1105 O HOH A 1129 2.11 REMARK 500 O HOH B 622 O HOH B 1181 2.11 REMARK 500 O HOH A 601 O HOH A 1040 2.11 REMARK 500 O HOH A 1172 O HOH B 1097 2.11 REMARK 500 O HOH A 646 O HOH A 1145 2.12 REMARK 500 O HOH A 664 O HOH B 1181 2.12 REMARK 500 O HOH A 1172 O HOH B 637 2.12 REMARK 500 OD1 ASP B 213 O HOH B 602 2.12 REMARK 500 O HOH A 1119 O HOH B 1181 2.12 REMARK 500 O HOH A 939 O HOH A 1036 2.13 REMARK 500 O HOH A 651 O HOH A 892 2.14 REMARK 500 O HOH A 923 O HOH A 1020 2.15 REMARK 500 O HOH B 602 O HOH B 874 2.15 REMARK 500 O HOH A 607 O HOH A 1145 2.15 REMARK 500 O HOH A 616 O HOH A 966 2.16 REMARK 500 OE2 GLU B 127 O HOH B 603 2.16 REMARK 500 O HOH B 792 O HOH B 1224 2.16 REMARK 500 O HOH B 601 O HOH B 728 2.17 REMARK 500 O HOH A 884 O HOH A 1129 2.17 REMARK 500 O HOH B 1050 O HOH B 1100 2.17 REMARK 500 OD1 ASP A 213 O HOH A 601 2.18 REMARK 500 O HOH A 619 O HOH A 1172 2.18 REMARK 500 O HOH B 693 O HOH B 1147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 642 1556 2.08 REMARK 500 O HOH B 602 O HOH B 614 1554 2.11 REMARK 500 O HOH A 602 O HOH B 885 1655 2.12 REMARK 500 O HOH B 602 O HOH B 1111 1554 2.15 REMARK 500 O HOH A 1129 O HOH B 687 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 96 144.59 -173.63 REMARK 500 GLN A 174 -125.65 -115.10 REMARK 500 TRP A 276 -42.43 -155.08 REMARK 500 PRO A 322 32.02 -96.95 REMARK 500 LEU A 328 -113.58 -111.09 REMARK 500 LEU A 378 -35.16 -132.31 REMARK 500 SER A 385 -104.09 -150.25 REMARK 500 ALA A 411 -150.60 -111.11 REMARK 500 SER A 461 59.58 38.18 REMARK 500 TYR B 96 142.42 -172.41 REMARK 500 GLN B 174 -127.47 -114.07 REMARK 500 CYS B 234 56.66 -93.43 REMARK 500 TRP B 276 -42.57 -152.74 REMARK 500 LEU B 328 -110.93 -114.86 REMARK 500 LEU B 378 -34.85 -130.58 REMARK 500 SER B 385 -101.31 -160.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1264 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1266 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1267 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1268 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1259 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1260 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B1261 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1262 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 357 OE1 REMARK 620 2 GLU A 359 OE1 92.7 REMARK 620 3 ALA A 379 O 159.0 89.1 REMARK 620 4 ASN A 467 O 84.1 92.7 116.7 REMARK 620 5 ASN A 467 OD1 96.5 165.6 86.3 77.2 REMARK 620 6 HOH A 609 O 56.3 96.4 102.7 139.6 97.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 357 OE1 REMARK 620 2 GLU B 359 OE1 91.4 REMARK 620 3 ALA B 379 O 161.7 89.1 REMARK 620 4 ASN B 467 O 82.7 91.8 115.5 REMARK 620 5 ASN B 467 OD1 98.2 163.9 85.8 76.8 REMARK 620 6 HOH B 643 O 68.1 99.0 93.7 149.0 96.5 REMARK 620 N 1 2 3 4 5 DBREF 8J3Y A 84 473 UNP Q21KS2 Q21KS2_SACD2 84 473 DBREF 8J3Y B 84 473 UNP Q21KS2 Q21KS2_SACD2 84 473 SEQADV 8J3Y HIS A 82 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3Y MET A 83 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3Y GLN A 168 UNP Q21KS2 GLU 168 ENGINEERED MUTATION SEQADV 8J3Y HIS B 82 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3Y MET B 83 UNP Q21KS2 EXPRESSION TAG SEQADV 8J3Y GLN B 168 UNP Q21KS2 GLU 168 ENGINEERED MUTATION SEQRES 1 A 392 HIS MET ALA GLN ASP MET ARG SER GLU LYS ARG GLY LEU SEQRES 2 A 392 ALA TYR GLY TYR HIS SER GLU ASN ASP LEU LYS ALA MET SEQRES 3 A 392 GLN GLY LYS VAL LYS TRP TRP TYR ASN TRP ASP THR GLN SEQRES 4 A 392 ALA ASP ALA ASN VAL LYS GLU ASN TYR ALA SER TYR GLY SEQRES 5 A 392 TYR ASP PHE VAL PRO MET ALA TRP ASP GLU ASN PHE ASN SEQRES 6 A 392 GLU GLU ALA LEU ARG SER PHE LEU ASP ASN HIS PRO ASP SEQRES 7 A 392 VAL LYS TYR LEU LEU GLY TRP ASN GLN PRO ASN PHE MET SEQRES 8 A 392 GLU GLN ALA ASN LEU THR PRO ALA GLU ALA ALA ALA HIS SEQRES 9 A 392 TRP PRO VAL LEU GLU ALA ILE ALA GLN ASP TYR ASN LEU SEQRES 10 A 392 LYS LEU VAL ALA PRO ALA VAL ASN TYR SER PRO GLY ASN SEQRES 11 A 392 VAL ASP ILE PRO GLY THR ASP ASP ASP TYR ASP PRO TRP SEQRES 12 A 392 LEU TYR LEU ASP ALA PHE PHE GLU ALA CYS GLU GLY CYS SEQRES 13 A 392 GLN VAL ASP TYR ILE ALA VAL HIS CYS TYR MET LYS TYR SEQRES 14 A 392 GLU SER ALA PHE SER TRP TYR VAL GLY GLU PHE GLU ARG SEQRES 15 A 392 TYR ASN LYS PRO ILE TRP VAL THR GLU TRP ALA GLY TRP SEQRES 16 A 392 ASP ASP GLY GLY PRO ALA ASN MET GLY GLU GLN MET ASN SEQRES 17 A 392 PHE LEU SER ASP THR VAL ARG TRP MET GLU SER ASN ASP SEQRES 18 A 392 ASN ILE TYR ARG TYR SER TRP PHE LEU GLY ARG SER SER SEQRES 19 A 392 GLU GLY TYR ASP GLN PHE PRO TYR LEU ASP VAL LEU LEU SEQRES 20 A 392 ALA ASP GLY GLU LEU THR PRO LEU GLY SER VAL TYR THR SEQRES 21 A 392 SER ILE PRO SER ASN ASP PHE ARG TYR LYS ILE PRO ALA SEQRES 22 A 392 ARG ILE GLU ALA GLU GLY ALA HIS SER LEU THR GLY PHE SEQRES 23 A 392 LYS HIS LEU ALA THR THR ASP THR THR GLY LEU ALA LYS SEQRES 24 A 392 LEU ILE ALA ALA SER ASN GLU VAL ALA GLU TYR LYS LEU SEQRES 25 A 392 ASN VAL GLU GLU GLY GLY ASP TYR THR LEU ALA LEU ARG SEQRES 26 A 392 LEU ALA SER SER ALA ASN SER ASP ILE ALA ILE ARG VAL SEQRES 27 A 392 ASP GLY LEU LEU VAL TYR THR PHE GLU ASP ILE ASN THR SEQRES 28 A 392 GLY GLY VAL GLU ALA TRP MET THR PHE SER SER THR PRO SEQRES 29 A 392 ILE SER LEU THR ALA GLY ASP HIS ILE LEU ARG VAL GLU SEQRES 30 A 392 SER LYS SER SER ARG PHE GLY PHE ASN TRP LEU GLU LEU SEQRES 31 A 392 THR ASN SEQRES 1 B 392 HIS MET ALA GLN ASP MET ARG SER GLU LYS ARG GLY LEU SEQRES 2 B 392 ALA TYR GLY TYR HIS SER GLU ASN ASP LEU LYS ALA MET SEQRES 3 B 392 GLN GLY LYS VAL LYS TRP TRP TYR ASN TRP ASP THR GLN SEQRES 4 B 392 ALA ASP ALA ASN VAL LYS GLU ASN TYR ALA SER TYR GLY SEQRES 5 B 392 TYR ASP PHE VAL PRO MET ALA TRP ASP GLU ASN PHE ASN SEQRES 6 B 392 GLU GLU ALA LEU ARG SER PHE LEU ASP ASN HIS PRO ASP SEQRES 7 B 392 VAL LYS TYR LEU LEU GLY TRP ASN GLN PRO ASN PHE MET SEQRES 8 B 392 GLU GLN ALA ASN LEU THR PRO ALA GLU ALA ALA ALA HIS SEQRES 9 B 392 TRP PRO VAL LEU GLU ALA ILE ALA GLN ASP TYR ASN LEU SEQRES 10 B 392 LYS LEU VAL ALA PRO ALA VAL ASN TYR SER PRO GLY ASN SEQRES 11 B 392 VAL ASP ILE PRO GLY THR ASP ASP ASP TYR ASP PRO TRP SEQRES 12 B 392 LEU TYR LEU ASP ALA PHE PHE GLU ALA CYS GLU GLY CYS SEQRES 13 B 392 GLN VAL ASP TYR ILE ALA VAL HIS CYS TYR MET LYS TYR SEQRES 14 B 392 GLU SER ALA PHE SER TRP TYR VAL GLY GLU PHE GLU ARG SEQRES 15 B 392 TYR ASN LYS PRO ILE TRP VAL THR GLU TRP ALA GLY TRP SEQRES 16 B 392 ASP ASP GLY GLY PRO ALA ASN MET GLY GLU GLN MET ASN SEQRES 17 B 392 PHE LEU SER ASP THR VAL ARG TRP MET GLU SER ASN ASP SEQRES 18 B 392 ASN ILE TYR ARG TYR SER TRP PHE LEU GLY ARG SER SER SEQRES 19 B 392 GLU GLY TYR ASP GLN PHE PRO TYR LEU ASP VAL LEU LEU SEQRES 20 B 392 ALA ASP GLY GLU LEU THR PRO LEU GLY SER VAL TYR THR SEQRES 21 B 392 SER ILE PRO SER ASN ASP PHE ARG TYR LYS ILE PRO ALA SEQRES 22 B 392 ARG ILE GLU ALA GLU GLY ALA HIS SER LEU THR GLY PHE SEQRES 23 B 392 LYS HIS LEU ALA THR THR ASP THR THR GLY LEU ALA LYS SEQRES 24 B 392 LEU ILE ALA ALA SER ASN GLU VAL ALA GLU TYR LYS LEU SEQRES 25 B 392 ASN VAL GLU GLU GLY GLY ASP TYR THR LEU ALA LEU ARG SEQRES 26 B 392 LEU ALA SER SER ALA ASN SER ASP ILE ALA ILE ARG VAL SEQRES 27 B 392 ASP GLY LEU LEU VAL TYR THR PHE GLU ASP ILE ASN THR SEQRES 28 B 392 GLY GLY VAL GLU ALA TRP MET THR PHE SER SER THR PRO SEQRES 29 B 392 ILE SER LEU THR ALA GLY ASP HIS ILE LEU ARG VAL GLU SEQRES 30 B 392 SER LYS SER SER ARG PHE GLY PHE ASN TRP LEU GLU LEU SEQRES 31 B 392 THR ASN HET BGC C 1 12 HET BGC C 2 12 HET BGC C 3 11 HET BGC C 4 11 HET BGC C 5 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET BGC E 1 12 HET BGC E 2 11 HET BGC E 3 11 HET BGC E 4 11 HET BGC F 1 12 HET BGC F 2 11 HET BGC F 3 11 HET BGC F 4 11 HET GOL A 501 6 HET GOL A 502 6 HET BGC A 503 12 HET MG A 504 1 HET GOL B 501 6 HET MG B 502 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BGC 18(C6 H12 O6) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 MG 2(MG 2+) FORMUL 13 HOH *1332(H2 O) HELIX 1 AA1 SER A 100 GLN A 108 1 9 HELIX 2 AA2 ASP A 122 LYS A 126 5 5 HELIX 3 AA3 ASN A 128 GLY A 133 5 6 HELIX 4 AA4 ASN A 146 HIS A 157 1 12 HELIX 5 AA5 THR A 178 HIS A 185 1 8 HELIX 6 AA6 HIS A 185 ASN A 197 1 13 HELIX 7 AA7 ASP A 222 CYS A 234 1 13 HELIX 8 AA8 TYR A 250 PHE A 261 1 12 HELIX 9 AA9 GLU A 262 ASN A 265 5 4 HELIX 10 AB1 ASN A 283 ASN A 301 1 19 HELIX 11 AB2 THR A 334 ILE A 343 1 10 HELIX 12 AB3 GLU A 359 ALA A 361 5 3 HELIX 13 AB4 SER B 100 GLN B 108 1 9 HELIX 14 AB5 ASP B 122 LYS B 126 5 5 HELIX 15 AB6 ASN B 128 GLY B 133 5 6 HELIX 16 AB7 ASN B 146 HIS B 157 1 12 HELIX 17 AB8 THR B 178 HIS B 185 1 8 HELIX 18 AB9 HIS B 185 ASN B 197 1 13 HELIX 19 AC1 ASP B 222 CYS B 234 1 13 HELIX 20 AC2 TYR B 250 PHE B 261 1 12 HELIX 21 AC3 GLU B 262 ASN B 265 5 4 HELIX 22 AC4 ASN B 283 ASN B 301 1 19 HELIX 23 AC5 THR B 334 ILE B 343 1 10 HELIX 24 AC6 GLU B 359 ALA B 361 5 3 SHEET 1 AA1 6 ASP A 135 PHE A 136 0 SHEET 2 AA1 6 TRP A 113 TYR A 115 1 N TRP A 114 O ASP A 135 SHEET 3 AA1 6 ARG A 92 ALA A 95 1 N LEU A 94 O TYR A 115 SHEET 4 AA1 6 ILE A 304 PHE A 310 1 O TYR A 307 N GLY A 93 SHEET 5 AA1 6 ILE A 268 TRP A 273 1 N VAL A 270 O SER A 308 SHEET 6 AA1 6 ILE A 242 CYS A 246 1 N ILE A 242 O TRP A 269 SHEET 1 AA2 2 TYR A 162 LEU A 164 0 SHEET 2 AA2 2 LYS A 199 VAL A 201 1 O VAL A 201 N LEU A 163 SHEET 1 AA3 3 TYR A 350 LYS A 351 0 SHEET 2 AA3 3 VAL A 388 VAL A 395 1 O ASN A 394 N TYR A 350 SHEET 3 AA3 3 SER A 363 THR A 365 -1 N THR A 365 O VAL A 388 SHEET 1 AA4 5 TYR A 350 LYS A 351 0 SHEET 2 AA4 5 VAL A 388 VAL A 395 1 O ASN A 394 N TYR A 350 SHEET 3 AA4 5 GLY A 451 SER A 459 -1 O VAL A 457 N ALA A 389 SHEET 4 AA4 5 SER A 413 VAL A 419 -1 N ARG A 418 O ARG A 456 SHEET 5 AA4 5 LEU A 422 ILE A 430 -1 O TYR A 425 N ILE A 417 SHEET 1 AA5 4 ALA A 354 GLU A 357 0 SHEET 2 AA5 4 PHE A 464 THR A 472 -1 O LEU A 469 N ILE A 356 SHEET 3 AA5 4 GLY A 399 ALA A 408 -1 N ALA A 404 O GLU A 470 SHEET 4 AA5 4 MET A 439 SER A 442 -1 O PHE A 441 N LEU A 405 SHEET 1 AA6 5 LYS A 368 ALA A 371 0 SHEET 2 AA6 5 ALA A 379 ALA A 383 -1 O LYS A 380 N LEU A 370 SHEET 3 AA6 5 PHE A 464 THR A 472 -1 O PHE A 464 N ALA A 383 SHEET 4 AA6 5 GLY A 399 ALA A 408 -1 N ALA A 404 O GLU A 470 SHEET 5 AA6 5 ILE A 446 LEU A 448 -1 O ILE A 446 N TYR A 401 SHEET 1 AA7 6 ASP B 135 PHE B 136 0 SHEET 2 AA7 6 TRP B 113 TYR B 115 1 N TRP B 114 O ASP B 135 SHEET 3 AA7 6 ARG B 92 ALA B 95 1 N LEU B 94 O TYR B 115 SHEET 4 AA7 6 ILE B 304 PHE B 310 1 O TYR B 307 N GLY B 93 SHEET 5 AA7 6 ILE B 268 TRP B 273 1 N ILE B 268 O TYR B 305 SHEET 6 AA7 6 ILE B 242 CYS B 246 1 N ILE B 242 O TRP B 269 SHEET 1 AA8 2 TYR B 162 LEU B 164 0 SHEET 2 AA8 2 LYS B 199 VAL B 201 1 O VAL B 201 N LEU B 163 SHEET 1 AA9 4 ALA B 354 GLU B 357 0 SHEET 2 AA9 4 PHE B 464 THR B 472 -1 O LEU B 469 N ILE B 356 SHEET 3 AA9 4 GLY B 399 ALA B 408 -1 N ALA B 404 O GLU B 470 SHEET 4 AA9 4 MET B 439 SER B 442 -1 O PHE B 441 N LEU B 405 SHEET 1 AB1 5 LYS B 368 ALA B 371 0 SHEET 2 AB1 5 ALA B 379 ALA B 383 -1 O LYS B 380 N LEU B 370 SHEET 3 AB1 5 PHE B 464 THR B 472 -1 O PHE B 466 N LEU B 381 SHEET 4 AB1 5 GLY B 399 ALA B 408 -1 N ALA B 404 O GLU B 470 SHEET 5 AB1 5 ILE B 446 LEU B 448 -1 O ILE B 446 N TYR B 401 SHEET 1 AB2 5 SER B 363 THR B 365 0 SHEET 2 AB2 5 VAL B 388 VAL B 395 -1 O VAL B 388 N THR B 365 SHEET 3 AB2 5 GLY B 451 LYS B 460 -1 O VAL B 457 N ALA B 389 SHEET 4 AB2 5 SER B 413 VAL B 419 -1 N ARG B 418 O ARG B 456 SHEET 5 AB2 5 LEU B 422 ILE B 430 -1 O ILE B 430 N SER B 413 SSBOND 1 CYS A 234 CYS A 237 1555 1555 2.05 SSBOND 2 CYS B 234 CYS B 237 1555 1555 2.06 LINK O3 BGC C 1 C1 BGC C 2 1555 1555 1.46 LINK O3 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O3 BGC C 3 C1 BGC C 4 1555 1555 1.44 LINK O3 BGC C 4 C1 BGC C 5 1555 1555 1.42 LINK O3 BGC D 1 C1 BGC D 2 1555 1555 1.41 LINK O3 BGC D 2 C1 BGC D 3 1555 1555 1.43 LINK O3 BGC D 3 C1 BGC D 4 1555 1555 1.43 LINK O3 BGC E 1 C1 BGC E 2 1555 1555 1.44 LINK O3 BGC E 2 C1 BGC E 3 1555 1555 1.44 LINK O3 BGC E 3 C1 BGC E 4 1555 1555 1.43 LINK O3 BGC F 1 C1 BGC F 2 1555 1555 1.42 LINK O3 BGC F 2 C1 BGC F 3 1555 1555 1.43 LINK O3 BGC F 3 C1 BGC F 4 1555 1555 1.43 LINK OE1 GLU A 357 MG MG A 504 1555 1555 2.62 LINK OE1 GLU A 359 MG MG A 504 1555 1555 2.48 LINK O ALA A 379 MG MG A 504 1555 1555 2.27 LINK O ASN A 467 MG MG A 504 1555 1555 2.36 LINK OD1 ASN A 467 MG MG A 504 1555 1555 2.39 LINK MG MG A 504 O HOH A 609 1555 1555 2.31 LINK OE1 GLU B 357 MG MG B 502 1555 1555 2.52 LINK OE1 GLU B 359 MG MG B 502 1555 1555 2.46 LINK O ALA B 379 MG MG B 502 1555 1555 2.29 LINK O ASN B 467 MG MG B 502 1555 1555 2.36 LINK OD1 ASN B 467 MG MG B 502 1555 1555 2.41 LINK MG MG B 502 O HOH B 643 1555 1555 2.33 CISPEP 1 PHE A 310 LEU A 311 0 5.51 CISPEP 2 PHE A 321 PRO A 322 0 1.39 CISPEP 3 ILE A 352 PRO A 353 0 -2.91 CISPEP 4 PHE B 310 LEU B 311 0 5.82 CISPEP 5 PHE B 321 PRO B 322 0 1.87 CISPEP 6 ILE B 352 PRO B 353 0 -1.77 CRYST1 63.479 97.802 72.421 90.00 108.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015753 0.000000 0.005240 0.00000 SCALE2 0.000000 0.010225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014552 0.00000