HEADER IMMUNE SYSTEM 01-MAY-23 8J8I TITLE MEMBRANE-BOUND STRUCTURE OF CD3Z CYTOPLASMIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD3 ZETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T-CELL RECEPTOR T3 ZETA CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD247, CD3Z, T3Z, TCRZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, CD3Z, ITAM, MEMBRANE-BOUND STRUCTURE, KEYWDS 2 PHOSPHORYLATION PATTERN, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.LI,C.XU REVDAT 2 26-NOV-25 8J8I 1 JRNL REVDAT 1 01-MAY-24 8J8I 0 JRNL AUTH H.LI,L.MENG,C.CHU,C.LI,H.YANG,K.CAO,Y.ZHU,X.GAO,C.YAN, JRNL AUTH 2 O.DUSHEK,H.WANG,X.SHI,C.XU JRNL TITL LIPID-REGULATED PHOSPHORYLATION HIERARCHY OF THE T CELL JRNL TITL 2 RECEPTOR TYROSINE MOTIFS. JRNL REF MOL.CELL V. 85 3694 2025 JRNL REFN ISSN 1097-2765 JRNL PMID 41043394 JRNL DOI 10.1016/J.MOLCEL.2025.09.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300037421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 CD3ZTMCD, 20 MM NONE BIS-TRIS, REMARK 210 60 MM NONE POPG, 90 % NONE H2O, REMARK 210 10 % NONE D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 C(CO)NH; 2D 1H-13C HSQC; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C FILTERED- REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, KUJIRA, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 ILE A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 ILE A 17 REMARK 465 TYR A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 THR A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 PHE A 26 REMARK 465 LEU A 27 REMARK 465 ARG A 28 REMARK 465 VAL A 29 REMARK 465 LYS A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 43 H ASN A 45 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 34 150.24 76.32 REMARK 500 1 ALA A 35 -24.25 73.46 REMARK 500 1 ALA A 39 88.41 29.14 REMARK 500 1 TYR A 40 0.31 -59.99 REMARK 500 1 GLN A 42 145.16 -175.36 REMARK 500 1 GLN A 44 -37.56 65.32 REMARK 500 1 ASN A 45 -67.64 176.97 REMARK 500 1 GLN A 46 87.11 46.79 REMARK 500 1 TYR A 48 -7.01 64.83 REMARK 500 1 ASN A 49 -110.63 -100.26 REMARK 500 1 GLU A 50 -85.33 58.81 REMARK 500 1 LEU A 51 1.95 58.05 REMARK 500 1 ASN A 52 83.04 54.44 REMARK 500 1 ARG A 55 -79.63 -82.53 REMARK 500 1 ARG A 56 9.65 52.77 REMARK 500 1 GLU A 57 -75.19 -166.33 REMARK 500 1 GLU A 58 91.39 -65.32 REMARK 500 1 ASP A 63 91.75 40.00 REMARK 500 1 LYS A 64 17.27 45.69 REMARK 500 1 ARG A 65 -154.58 36.75 REMARK 500 1 ARG A 66 99.26 47.26 REMARK 500 1 ARG A 68 36.00 31.70 REMARK 500 1 PRO A 70 23.43 -67.42 REMARK 500 1 VAL A 72 31.31 34.80 REMARK 500 1 LYS A 75 49.30 -144.41 REMARK 500 1 GLN A 83 10.08 -141.23 REMARK 500 1 GLU A 89 77.61 44.67 REMARK 500 1 LEU A 90 44.59 20.49 REMARK 500 1 GLN A 91 121.32 -38.03 REMARK 500 1 LYS A 92 40.91 -152.27 REMARK 500 1 VAL A 95 51.29 -153.25 REMARK 500 1 ALA A 96 120.39 57.16 REMARK 500 1 GLU A 97 78.23 -114.15 REMARK 500 1 GLU A 101 49.00 -109.22 REMARK 500 1 LYS A 105 -6.54 67.14 REMARK 500 1 LYS A 112 96.03 62.81 REMARK 500 1 HIS A 114 76.86 46.41 REMARK 500 1 TYR A 118 86.40 -40.36 REMARK 500 1 GLN A 119 -108.07 -61.41 REMARK 500 1 LEU A 121 -0.87 -143.26 REMARK 500 1 SER A 122 -124.31 44.51 REMARK 500 1 THR A 123 -38.33 69.32 REMARK 500 1 THR A 125 -107.93 -101.16 REMARK 500 1 LYS A 126 -119.70 48.41 REMARK 500 1 THR A 128 101.70 50.75 REMARK 500 1 ALA A 131 90.38 72.56 REMARK 500 1 HIS A 133 -153.59 -145.94 REMARK 500 1 GLN A 135 140.14 179.80 REMARK 500 2 SER A 32 2.37 -156.62 REMARK 500 2 SER A 34 158.20 67.19 REMARK 500 REMARK 500 THIS ENTRY HAS 505 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36564 RELATED DB: BMRB REMARK 900 MEMBRANE-BOUND STRUCTURE OF CD3Z CYTOPLASMIC DOMAIN DBREF 8J8I A 1 140 UNP P20963 CD3Z_HUMAN 25 164 SEQADV 8J8I SER A 8 UNP P20963 CYS 32 ENGINEERED MUTATION SEQADV 8J8I LEU A 12 UNP P20963 ASP 36 ENGINEERED MUTATION SEQADV 8J8I VAL A 72 UNP P20963 MET 96 ENGINEERED MUTATION SEQADV 8J8I VAL A 95 UNP P20963 MET 119 ENGINEERED MUTATION SEQADV 8J8I VAL A 104 UNP P20963 MET 128 ENGINEERED MUTATION SEQADV 8J8I VAL A 134 UNP P20963 MET 158 ENGINEERED MUTATION SEQRES 1 A 140 GLY LEU LEU ASP PRO LYS LEU SER TYR LEU LEU LEU GLY SEQRES 2 A 140 ILE LEU PHE ILE TYR GLY VAL ILE LEU THR ALA LEU PHE SEQRES 3 A 140 LEU ARG VAL LYS PHE SER ARG SER ALA ASP ALA PRO ALA SEQRES 4 A 140 TYR GLN GLN GLY GLN ASN GLN LEU TYR ASN GLU LEU ASN SEQRES 5 A 140 LEU GLY ARG ARG GLU GLU TYR ASP VAL LEU ASP LYS ARG SEQRES 6 A 140 ARG GLY ARG ASP PRO GLU VAL GLY GLY LYS PRO GLN ARG SEQRES 7 A 140 ARG LYS ASN PRO GLN GLU GLY LEU TYR ASN GLU LEU GLN SEQRES 8 A 140 LYS ASP LYS VAL ALA GLU ALA TYR SER GLU ILE GLY VAL SEQRES 9 A 140 LYS GLY GLU ARG ARG ARG GLY LYS GLY HIS ASP GLY LEU SEQRES 10 A 140 TYR GLN GLY LEU SER THR ALA THR LYS ASP THR TYR ASP SEQRES 11 A 140 ALA LEU HIS VAL GLN ALA LEU PRO PRO ARG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 195 0 0 0 0 0 0 6 884 1 0 11 END