HEADER TRANSCRIPTION 02-MAY-23 8J8Q TITLE STRUCTURE OF THE FOUR-COMPONENT PAF1 COMPLEX FROM SACCHAROMYCES TITLE 2 EUBAYANUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTR9-LIKE PROTEIN; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PAF1-LIKE PROTEIN; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RTF1-LIKE PROTEIN; COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CDC73-LIKE PROTEIN; COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES EUBAYANUS; SOURCE 3 ORGANISM_TAXID: 1080349; SOURCE 4 GENE: DI49_2263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES EUBAYANUS; SOURCE 9 ORGANISM_TAXID: 1080349; SOURCE 10 GENE: DI49_1302; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES EUBAYANUS; SOURCE 15 ORGANISM_TAXID: 1080349; SOURCE 16 GENE: DI49_1738; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES EUBAYANUS; SOURCE 21 ORGANISM_TAXID: 1080349; SOURCE 22 GENE: DI49_3914; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION ELONGATION FACTOR, THE POLYMERASE ASSOCIATED FACTOR 1 KEYWDS 2 (PAF1) COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,Y.QIN,Y.ZHOU,Y.CAO REVDAT 2 14-JUN-23 8J8Q 1 JRNL REVDAT 1 24-MAY-23 8J8Q 0 JRNL AUTH Y.QIN,Y.ZHOU,Y.CAO,Y.REN,P.DENG,J.JIANG,Z.WANG JRNL TITL STRUCTURAL BASIS OF THE TRANSCRIPTIONAL ELONGATION FACTOR JRNL TITL 2 PAF1 CORE COMPLEX FROM SACCHAROMYCES EUBAYANUS . JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37240075 JRNL DOI 10.3390/IJMS24108730 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0700 - 6.6600 0.99 2816 135 0.2365 0.2804 REMARK 3 2 6.6600 - 5.3000 0.99 2735 173 0.2871 0.2929 REMARK 3 3 5.3000 - 4.6300 1.00 2774 138 0.2227 0.2376 REMARK 3 4 4.6300 - 4.2100 1.00 2726 141 0.1958 0.2454 REMARK 3 5 4.2100 - 3.9100 0.99 2745 146 0.2072 0.2612 REMARK 3 6 3.9100 - 3.6800 1.00 2743 149 0.2272 0.2673 REMARK 3 7 3.6800 - 3.5000 1.00 2770 138 0.2368 0.2925 REMARK 3 8 3.5000 - 3.3400 1.00 2754 135 0.2533 0.2789 REMARK 3 9 3.3400 - 3.2200 1.00 2726 143 0.2658 0.3359 REMARK 3 10 3.2200 - 3.1100 0.91 2469 130 0.2860 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.395 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8908 REMARK 3 ANGLE : 1.136 12002 REMARK 3 CHIRALITY : 0.095 1346 REMARK 3 PLANARITY : 0.006 1535 REMARK 3 DIHEDRAL : 23.201 3410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.1642 33.1083 -5.9198 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.0401 REMARK 3 T33: 0.2061 T12: -0.0933 REMARK 3 T13: -0.0321 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.8187 L22: 0.7227 REMARK 3 L33: 1.5262 L12: -0.4515 REMARK 3 L13: 0.2969 L23: -0.1147 REMARK 3 S TENSOR REMARK 3 S11: 0.1674 S12: 0.2251 S13: -0.3294 REMARK 3 S21: -0.3386 S22: -0.0112 S23: 0.2316 REMARK 3 S31: 0.1889 S32: -0.5637 S33: -0.0840 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX170-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC PH REMARK 280 7.0; 25% W/V POLYETHYLENE GLYCO 3,350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.58650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, P, R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE C 1 REMARK 465 VAL C 532 REMARK 465 SER C 533 REMARK 465 ASP C 534 REMARK 465 MSE C 535 REMARK 465 ASP C 664 REMARK 465 GLY C 665 REMARK 465 LYS C 666 REMARK 465 LYS C 667 REMARK 465 SER C 668 REMARK 465 ARG C 669 REMARK 465 ASN C 670 REMARK 465 PRO C 671 REMARK 465 LYS C 672 REMARK 465 GLU C 673 REMARK 465 THR C 833 REMARK 465 LEU C 834 REMARK 465 ARG C 835 REMARK 465 ARG C 836 REMARK 465 SER C 837 REMARK 465 ASN C 838 REMARK 465 PRO C 839 REMARK 465 LYS C 840 REMARK 465 PHE C 841 REMARK 465 ARG C 842 REMARK 465 THR C 843 REMARK 465 VAL C 844 REMARK 465 GLN C 845 REMARK 465 GLN C 846 REMARK 465 ILE C 847 REMARK 465 LYS C 848 REMARK 465 ASP C 866 REMARK 465 LEU C 867 REMARK 465 LYS C 868 REMARK 465 GLU C 869 REMARK 465 PHE C 870 REMARK 465 ASN C 871 REMARK 465 MSE C 872 REMARK 465 ILE C 873 REMARK 465 PRO C 874 REMARK 465 GLN C 907 REMARK 465 SER P 0 REMARK 465 MSE P 1 REMARK 465 SER P 2 REMARK 465 LYS P 3 REMARK 465 LYS P 4 REMARK 465 GLN P 5 REMARK 465 GLU P 6 REMARK 465 TYR P 7 REMARK 465 ILE P 8 REMARK 465 LEU P 107 REMARK 465 THR P 108 REMARK 465 LYS P 109 REMARK 465 THR P 110 REMARK 465 SER R 494 REMARK 465 LYS R 495 REMARK 465 SER R 496 REMARK 465 ASP R 497 REMARK 465 PRO R 498 REMARK 465 PHE R 499 REMARK 465 SER R 500 REMARK 465 ARG R 501 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 ALA A 156 REMARK 465 GLY A 157 REMARK 465 ASN A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 VAL A 161 REMARK 465 PRO A 162 REMARK 465 SER A 163 REMARK 465 LYS A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 ARG A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 LYS A 215 REMARK 465 LEU A 216 REMARK 465 PRO A 217 REMARK 465 PRO A 218 REMARK 465 GLY A 219 REMARK 465 HIS A 220 REMARK 465 LYS A 221 REMARK 465 GLY A 222 REMARK 465 ALA A 223 REMARK 465 HIS A 224 REMARK 465 GLY A 225 REMARK 465 ARG A 226 REMARK 465 VAL A 227 REMARK 465 SER A 228 REMARK 465 LYS A 229 REMARK 465 THR A 230 REMARK 465 ASN A 231 REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU C 747 NH2 ARG C 782 2.06 REMARK 500 O ASN C 813 CD1 ILE C 816 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP C 618 CB TRP C 618 CG -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER C 26 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 PRO C 218 C - N - CA ANGL. DEV. = 27.1 DEGREES REMARK 500 PRO C 218 C - N - CD ANGL. DEV. = -29.8 DEGREES REMARK 500 PHE C 748 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ASN P 51 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 11 -161.88 -63.83 REMARK 500 MSE C 13 53.41 -118.92 REMARK 500 ALA C 25 60.73 63.38 REMARK 500 GLU C 27 74.65 -107.94 REMARK 500 LEU C 29 82.15 -153.52 REMARK 500 ASP C 37 38.92 -84.82 REMARK 500 ASN C 88 79.75 54.19 REMARK 500 ALA C 106 56.80 -95.83 REMARK 500 SER C 110 49.09 -84.02 REMARK 500 ASN C 213 99.54 -161.31 REMARK 500 PRO C 218 120.74 -29.40 REMARK 500 LEU C 387 61.91 -117.95 REMARK 500 ASN C 402 55.43 -112.53 REMARK 500 LYS C 456 4.07 -68.16 REMARK 500 ASN C 496 72.25 48.44 REMARK 500 GLU C 552 -7.10 -57.22 REMARK 500 TRP C 556 -37.94 -38.28 REMARK 500 ILE C 597 -71.33 -37.11 REMARK 500 ASN C 606 57.87 -100.80 REMARK 500 SER C 623 -55.94 -131.21 REMARK 500 GLU C 625 -41.89 -26.69 REMARK 500 LYS C 642 11.49 53.32 REMARK 500 ASN C 698 92.44 -59.31 REMARK 500 SER C 712 49.44 -88.91 REMARK 500 ARG C 714 57.53 -115.46 REMARK 500 SER C 810 40.35 -80.88 REMARK 500 ASN C 813 -166.00 -71.19 REMARK 500 PRO P 20 85.93 -54.53 REMARK 500 LEU P 68 -4.91 63.65 REMARK 500 SER P 80 42.40 -88.68 REMARK 500 GLU R 535 75.55 60.77 REMARK 500 PHE A 192 14.09 54.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 217 PRO C 218 -33.69 REMARK 500 ASP C 609 LEU C 610 -139.32 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8J8Q C 1 907 UNP A0A0L8RHL9_SACEU DBREF2 8J8Q C A0A0L8RHL9 1 907 DBREF1 8J8Q P 1 110 UNP A0A0L8RM45_SACEU DBREF2 8J8Q P A0A0L8RM45 1 110 DBREF1 8J8Q R 494 570 UNP A0A0L8RIY1_SACEU DBREF2 8J8Q R A0A0L8RIY1 494 570 DBREF1 8J8Q A 153 233 UNP A0A0L8RF82_SACEU DBREF2 8J8Q A A0A0L8RF82 153 233 SEQADV 8J8Q SER P 0 UNP A0A0L8RM4 EXPRESSION TAG SEQRES 1 C 907 MSE ALA ASN THR ILE LYS VAL GLU GLY TYR PRO SER MSE SEQRES 2 C 907 GLU TRP PRO THR SER LEU ASP ILE PRO LEU LYS ALA SER SEQRES 3 C 907 GLU GLU LEU VAL GLY ILE ASP LEU GLU THR ASP LEU PRO SEQRES 4 C 907 ASP ASP PRO THR ASP LEU LYS THR LEU LEU VAL GLU GLU SEQRES 5 C 907 SER SER GLU LYS GLU HIS TRP LEU THR ILE ALA LEU ALA SEQRES 6 C 907 TYR CYS ASN HIS GLY LYS THR ASN GLU GLY ILE ARG LEU SEQRES 7 C 907 ILE GLU MSE ALA LEU ASP VAL PHE GLN ASN SER GLU ARG SEQRES 8 C 907 ALA SER LEU HIS THR PHE LEU THR TRP ALA HIS LEU ASN SEQRES 9 C 907 LEU ALA LYS GLY HIS SER LEU SER VAL GLU THR LYS GLU SEQRES 10 C 907 HIS GLU LEU THR GLN ALA GLU LEU ASN LEU LYS ASP ALA SEQRES 11 C 907 ILE GLY PHE ASP PRO THR TRP ILE GLY ASN MSE LEU ALA SEQRES 12 C 907 THR VAL GLU LEU TYR TYR GLN ARG GLY HIS TYR ASP LYS SEQRES 13 C 907 ALA LEU GLU THR SER ASP LEU PHE VAL LYS SER ILE HIS SEQRES 14 C 907 ALA GLU ASP HIS ARG SER GLY ARG GLN SER LYS PRO ASN SEQRES 15 C 907 CYS LEU PHE LEU LEU LEU ARG ALA LYS LEU LEU TYR GLN SEQRES 16 C 907 LYS LYS ASN TYR VAL ALA SER LEU LYS ILE PHE GLN GLU SEQRES 17 C 907 LEU LEU VAL ILE ASN PRO VAL LEU GLN PRO ASP PRO ARG SEQRES 18 C 907 ILE GLY ILE GLY LEU CYS PHE TRP GLN LEU LYS ASP PRO SEQRES 19 C 907 LYS MSE ALA ILE LYS SER TRP GLN ARG ALA LEU GLN ILE SEQRES 20 C 907 ASN SER LYS ASN THR SER ALA SER ILE LEU VAL LEU LEU SEQRES 21 C 907 GLY GLU PHE HIS ASN SER LEU THR ASP SER THR ASN ASP SEQRES 22 C 907 GLU VAL PHE LYS GLU THR PHE SER LYS ALA LEU SER ASP SEQRES 23 C 907 LEU LYS ASN ILE PHE SER GLU ASN GLN ASN ASN PRO VAL SEQRES 24 C 907 LEU LEU THR LEU LEU GLN THR TYR HIS TYR PHE LYS GLY SEQRES 25 C 907 ASP PHE GLN THR VAL LEU ASP ILE TYR HIS HIS LYS ILE SEQRES 26 C 907 LEU LYS MSE SER PRO LEU ILE ALA LYS THR VAL LEU SER SEQRES 27 C 907 GLU SER SER PHE TRP CYS GLY ARG ALA HIS TYR ALA LEU SEQRES 28 C 907 GLY ASP TYR ARG LYS SER PHE ILE MSE PHE GLN GLU SER SEQRES 29 C 907 LEU LYS LYS ASN GLU ASP ASN LEU MSE ALA ARG LEU GLY SEQRES 30 C 907 LEU GLY GLN THR GLN ILE LYS SER ASN LEU LEU GLU GLU SEQRES 31 C 907 SER ILE ILE THR PHE GLU ASN LEU TYR LYS THR ASN GLU SEQRES 32 C 907 SER LEU GLN GLU LEU ASN TYR ILE LEU GLY LEU LEU TYR SEQRES 33 C 907 ALA GLY LYS THR LEU ASP VAL LYS THR SER LYS SER ILE SEQRES 34 C 907 PRO ALA LYS GLU LEU ASN LYS LEU ASN GLU LYS ALA LEU SEQRES 35 C 907 GLN TYR LEU GLU ARG TYR ILE LYS LEU THR VAL ALA LYS SEQRES 36 C 907 LYS ASN GLN LEU ILE ILE SER ARG VAL TYR LEU VAL ILE SEQRES 37 C 907 SER GLN LEU TYR GLU SER GLN ASN GLN TYR LYS ILE SER SEQRES 38 C 907 LEU ASP PHE LEU SER LYS ALA LEU GLU GLU MSE GLU PHE SEQRES 39 C 907 VAL ASN LYS ASP GLU VAL PRO LEU GLU ILE LEU ASN ASN SEQRES 40 C 907 LEU ALA CYS TYR HIS PHE ILE ASN GLY ASP LEU THR LYS SEQRES 41 C 907 ALA ASP ASN LEU PHE GLU GLN ALA LYS ALA LYS VAL SER SEQRES 42 C 907 ASP MSE ASN LYS SER VAL ASN ILE THR LEU GLU TYR ASN SEQRES 43 C 907 ILE ALA ARG THR SER GLU LYS THR ASN TRP GLU LYS SER SEQRES 44 C 907 GLU SER ILE TYR SER GLN ILE THR SER SER HIS PRO SER SEQRES 45 C 907 TYR ILE SER ALA ARG ILE ARG ASN LEU TYR ILE LYS PHE SEQRES 46 C 907 ALA HIS SER LYS ILE ASN ASP SER GLU MSE ASN ILE GLU SEQRES 47 C 907 ILE ASN GLY LEU LEU GLU MSE ASN LYS SER ASP LEU GLU SEQRES 48 C 907 MSE ARG SER PHE TYR GLY TRP TYR LEU LYS ASN SER GLU SEQRES 49 C 907 GLU ARG LYS ASN SER GLU LYS SER THR SER HIS ASN LYS SEQRES 50 C 907 GLU THR LEU VAL LYS TYR ASN SER HIS ASP ALA TYR ALA SEQRES 51 C 907 LEU ILE SER LEU ALA ASN LEU TYR VAL THR ILE ALA ARG SEQRES 52 C 907 ASP GLY LYS LYS SER ARG ASN PRO LYS GLU GLN GLU LYS SEQRES 53 C 907 SER LYS HIS SER TYR LEU LYS ALA ILE GLN LEU TYR GLN SEQRES 54 C 907 LYS VAL LEU GLN ILE ASP PRO PHE ASN VAL PHE ALA ALA SEQRES 55 C 907 GLN GLY VAL ALA ILE ILE PHE ALA GLU SER LYS ARG LEU SEQRES 56 C 907 GLY PRO ALA LEU GLU ILE LEU ARG LYS ILE ARG ASP SER SEQRES 57 C 907 LEU ASP ASN GLU ASP VAL GLN LEU ASN LEU ALA HIS CYS SEQRES 58 C 907 LEU LEU GLU MSE ARG GLU PHE GLY LYS ALA ILE GLU ASN SEQRES 59 C 907 TYR GLU LEU VAL LEU LYS LYS PHE ASP ASN GLU ARG THR SEQRES 60 C 907 ARG PRO HIS ILE LEU ASN LEU LEU GLY ARG ALA TRP TYR SEQRES 61 C 907 SER ARG GLY MSE LYS GLU ARG SER VAL SER PHE PHE GLN SEQRES 62 C 907 LYS ALA LEU GLU ASN ALA LYS THR ALA LEU GLU LEU PHE SEQRES 63 C 907 VAL GLN GLN SER ALA LYS ASN LYS PHE ILE HIS SER VAL SEQRES 64 C 907 LYS PHE ASN ILE ALA LEU LEU GLN PHE GLN ILE ALA GLU SEQRES 65 C 907 THR LEU ARG ARG SER ASN PRO LYS PHE ARG THR VAL GLN SEQRES 66 C 907 GLN ILE LYS ASP SER LEU GLU GLY LEU GLU GLU GLY LEU SEQRES 67 C 907 ALA LEU PHE LYS GLU LEU ASN ASP LEU LYS GLU PHE ASN SEQRES 68 C 907 MSE ILE PRO LYS GLU GLU LEU GLU GLN ARG ILE GLN LEU SEQRES 69 C 907 GLY GLU THR THR MSE LYS SER ALA LEU GLU ARG SER LEU SEQRES 70 C 907 ASN GLU GLN GLU GLU PHE GLU LYS ASP GLN SEQRES 1 P 111 SER MSE SER LYS LYS GLN GLU TYR ILE ALA PRO ILE LYS SEQRES 2 P 111 TYR GLN ASN SER LEU PRO VAL PRO GLN LEU PRO PRO LYS SEQRES 3 P 111 LEU LEU ALA TYR PRO GLU ALA PRO GLU THR ASN PRO ASP SEQRES 4 P 111 SER SER GLN LEU ILE ASN SER LEU TYR VAL LYS THR ASN SEQRES 5 P 111 ILE SER ASN LEU ILE GLN GLN ASP GLU ASP LEU GLY MSE SEQRES 6 P 111 PRO VAL ASP LEU MSE LYS PHE PRO GLY LEU LEU ASN LYS SEQRES 7 P 111 LEU ASP SER LYS LEU LEU TYR GLY PHE ASP ASN VAL LYS SEQRES 8 P 111 LEU ASP LYS ASP ASP ARG ILE LEU LEU ARG ASP PRO ARG SEQRES 9 P 111 ILE ASP ARG LEU THR LYS THR SEQRES 1 R 77 SER LYS SER ASP PRO PHE SER ARG LEU LYS THR ARG THR SEQRES 2 R 77 LYS VAL TYR TYR GLN GLU ILE GLN LYS GLU GLU ASN ALA SEQRES 3 R 77 LYS ALA LYS GLU MSE ALA GLN GLN GLU LYS LEU GLN GLU SEQRES 4 R 77 ASP ARG GLU THR LYS GLU ARG ARG GLU LYS GLU LEU LEU SEQRES 5 R 77 LEU ALA GLN PHE ARG ARG LEU GLY GLY LEU GLU ARG MSE SEQRES 6 R 77 ILE GLY GLU LEU ASP ILE LYS PHE ASP PHE LYS PHE SEQRES 1 A 81 SER GLY SER ALA GLY ASN GLY LEU VAL PRO SER ASP PRO SEQRES 2 A 81 VAL LEU ALA GLU THR MSE LYS ASN GLU ARG VAL VAL GLN SEQRES 3 A 81 ASP HIS ASN SER ALA LEU ARG GLY ALA ARG PRO ILE ASN SEQRES 4 A 81 PHE GLY TYR LEU ILE LYS ASP ALA GLU LEU LYS LEU VAL SEQRES 5 A 81 GLN SER ILE LYS GLY SER LEU ARG GLY SER LYS LEU PRO SEQRES 6 A 81 PRO GLY HIS LYS GLY ALA HIS GLY ARG VAL SER LYS THR SEQRES 7 A 81 ASN GLY SER MODRES 8J8Q MSE C 13 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 81 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 141 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 236 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 328 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 360 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 373 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 492 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 595 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 605 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 612 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 745 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 784 MET MODIFIED RESIDUE MODRES 8J8Q MSE C 889 MET MODIFIED RESIDUE MODRES 8J8Q MSE P 64 MET MODIFIED RESIDUE MODRES 8J8Q MSE P 69 MET MODIFIED RESIDUE MODRES 8J8Q MSE R 524 MET MODIFIED RESIDUE MODRES 8J8Q MSE R 558 MET MODIFIED RESIDUE MODRES 8J8Q MSE A 171 MET MODIFIED RESIDUE HET MSE C 13 8 HET MSE C 81 8 HET MSE C 141 8 HET MSE C 236 8 HET MSE C 328 8 HET MSE C 360 8 HET MSE C 373 8 HET MSE C 492 8 HET MSE C 595 8 HET MSE C 605 8 HET MSE C 612 8 HET MSE C 745 8 HET MSE C 784 8 HET MSE C 889 8 HET MSE P 64 8 HET MSE P 69 8 HET MSE R 524 8 HET MSE R 558 8 HET MSE A 171 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 19(C5 H11 N O2 SE) HELIX 1 AA1 ASP C 41 GLU C 52 1 12 HELIX 2 AA2 GLU C 55 ASN C 68 1 14 HELIX 3 AA3 LYS C 71 LEU C 83 1 13 HELIX 4 AA4 ARG C 91 ALA C 106 1 16 HELIX 5 AA5 SER C 112 ASP C 134 1 23 HELIX 6 AA6 TRP C 137 ARG C 151 1 15 HELIX 7 AA7 HIS C 153 GLY C 176 1 24 HELIX 8 AA8 ASN C 182 LYS C 196 1 15 HELIX 9 AA9 ASN C 198 ASN C 213 1 16 HELIX 10 AB1 ASP C 219 LEU C 231 1 13 HELIX 11 AB2 ASP C 233 ASN C 248 1 16 HELIX 12 AB3 ASN C 251 ASP C 269 1 19 HELIX 13 AB4 ASN C 272 SER C 292 1 21 HELIX 14 AB5 ASN C 297 LYS C 311 1 15 HELIX 15 AB6 ASP C 313 LYS C 324 1 12 HELIX 16 AB7 MSE C 328 ILE C 332 5 5 HELIX 17 AB8 ALA C 333 LEU C 351 1 19 HELIX 18 AB9 ASP C 353 ASN C 368 1 16 HELIX 19 AC1 ASN C 371 SER C 385 1 15 HELIX 20 AC2 LEU C 387 TYR C 399 1 13 HELIX 21 AC3 LEU C 405 LEU C 421 1 17 HELIX 22 AC4 ASP C 422 ILE C 429 1 8 HELIX 23 AC5 PRO C 430 LYS C 455 1 26 HELIX 24 AC6 SER C 462 GLN C 475 1 14 HELIX 25 AC7 GLN C 477 GLU C 493 1 17 HELIX 26 AC8 PRO C 501 ASN C 515 1 15 HELIX 27 AC9 LEU C 518 LYS C 531 1 14 HELIX 28 AD1 LYS C 537 SER C 551 1 15 HELIX 29 AD2 ASN C 555 SER C 568 1 14 HELIX 30 AD3 TYR C 573 HIS C 587 1 15 HELIX 31 AD4 ASN C 591 GLU C 604 1 14 HELIX 32 AD5 ASP C 609 SER C 623 1 15 HELIX 33 AD6 GLU C 624 LYS C 627 5 4 HELIX 34 AD7 ASN C 628 THR C 639 1 12 HELIX 35 AD8 ASP C 647 ARG C 663 1 17 HELIX 36 AD9 GLU C 675 ASP C 695 1 21 HELIX 37 AE1 ASN C 698 SER C 712 1 15 HELIX 38 AE2 GLY C 716 ARG C 726 1 11 HELIX 39 AE3 ASN C 731 ARG C 746 1 16 HELIX 40 AE4 GLU C 747 LYS C 760 1 14 HELIX 41 AE5 ARG C 766 MSE C 784 1 19 HELIX 42 AE6 SER C 790 GLN C 809 1 20 HELIX 43 AE7 ASN C 813 ALA C 831 1 19 HELIX 44 AE8 SER C 850 LEU C 864 1 15 HELIX 45 AE9 GLU C 876 ASP C 906 1 31 HELIX 46 AF1 SER P 39 THR P 50 1 12 HELIX 47 AF2 LYS P 81 GLY P 85 5 5 HELIX 48 AF3 ASP P 92 LEU P 98 1 7 HELIX 49 AF4 THR R 504 GLU R 532 1 29 HELIX 50 AF5 ARG R 540 LEU R 546 1 7 HELIX 51 AF6 GLY R 553 LEU R 562 1 10 HELIX 52 AF7 PRO A 165 ASN A 173 1 9 HELIX 53 AF8 PHE A 192 SER A 206 1 15 SHEET 1 AA1 2 SER C 18 ILE C 21 0 SHEET 2 AA1 2 VAL C 30 ASP C 33 -1 O VAL C 30 N ILE C 21 SHEET 1 AA2 2 LEU P 26 LEU P 27 0 SHEET 2 AA2 2 GLU A 174 ARG A 175 -1 O ARG A 175 N LEU P 26 LINK C SER C 12 N MSE C 13 1555 1555 1.30 LINK C MSE C 13 N GLU C 14 1555 1555 1.32 LINK C GLU C 80 N MSE C 81 1555 1555 1.33 LINK C MSE C 81 N ALA C 82 1555 1555 1.33 LINK C ASN C 140 N MSE C 141 1555 1555 1.33 LINK C MSE C 141 N LEU C 142 1555 1555 1.34 LINK C LYS C 235 N MSE C 236 1555 1555 1.33 LINK C MSE C 236 N ALA C 237 1555 1555 1.33 LINK C LYS C 327 N MSE C 328 1555 1555 1.33 LINK C MSE C 328 N SER C 329 1555 1555 1.33 LINK C ILE C 359 N MSE C 360 1555 1555 1.33 LINK C MSE C 360 N PHE C 361 1555 1555 1.34 LINK C LEU C 372 N MSE C 373 1555 1555 1.33 LINK C MSE C 373 N ALA C 374 1555 1555 1.34 LINK C GLU C 491 N MSE C 492 1555 1555 1.32 LINK C MSE C 492 N GLU C 493 1555 1555 1.33 LINK C GLU C 594 N MSE C 595 1555 1555 1.33 LINK C MSE C 595 N ASN C 596 1555 1555 1.34 LINK C GLU C 604 N MSE C 605 1555 1555 1.33 LINK C MSE C 605 N ASN C 606 1555 1555 1.33 LINK C GLU C 611 N MSE C 612 1555 1555 1.33 LINK C MSE C 612 N ARG C 613 1555 1555 1.34 LINK C GLU C 744 N MSE C 745 1555 1555 1.31 LINK C MSE C 745 N ARG C 746 1555 1555 1.32 LINK C GLY C 783 N MSE C 784 1555 1555 1.33 LINK C MSE C 784 N LYS C 785 1555 1555 1.34 LINK C THR C 888 N MSE C 889 1555 1555 1.33 LINK C MSE C 889 N LYS C 890 1555 1555 1.34 LINK C GLY P 63 N MSE P 64 1555 1555 1.33 LINK C MSE P 64 N PRO P 65 1555 1555 1.34 LINK C LEU P 68 N MSE P 69 1555 1555 1.33 LINK C MSE P 69 N LYS P 70 1555 1555 1.33 LINK C GLU R 523 N MSE R 524 1555 1555 1.33 LINK C MSE R 524 N ALA R 525 1555 1555 1.34 LINK C ARG R 557 N MSE R 558 1555 1555 1.33 LINK C MSE R 558 N ILE R 559 1555 1555 1.33 LINK C THR A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N LYS A 172 1555 1555 1.34 CRYST1 71.634 89.173 128.072 90.00 97.09 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013960 0.000000 0.001735 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007868 0.00000