HEADER TRANSCRIPTION 03-MAY-23 8J9A TITLE SOLUTION STRUCTURE OF ABD3 (RESIDUES 453-561) OF HUMAN MED15 ISOFORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACTIVATOR-BINDING DOMAIN 3; COMPND 5 SYNONYM: ACTIVATOR-RECRUITED COFACTOR 105 KDA COMPONENT,ARC105,CTG COMPND 6 REPEAT PROTEIN 7A,MEDIATOR COMPLEX SUBUNIT 15,POSITIVE COFACTOR 2 COMPND 7 GLUTAMINE/Q-RICH-ASSOCIATED PROTEIN,PC2 GLUTAMINE/Q-RICH-ASSOCIATED COMPND 8 PROTEIN,TPA-INDUCIBLE GENE 1 PROTEIN,TIG-1,TRINUCLEOTIDE REPEAT- COMPND 9 CONTAINING GENE 7 PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MED15, ARC105, CTG7A, PCQAP, TIG1, TNRC7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-30A(+) KEYWDS MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ZHANG,Y.LI REVDAT 1 08-MAY-24 8J9A 0 JRNL AUTH H.ZHANG,Y.LI JRNL TITL SOLUTION STRUCTURE OF ABD3 (RESIDUES 453-561) OF HUMAN MED15 JRNL TITL 2 ISOFORM 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA2ALPHA, ARIA2ALPHA REMARK 3 AUTHORS : WOLFGANG RIEPING, MICHAEL HABECK, BENJAMIN REMARK 3 BARDIAUX, AYMERIC BERNARD, THERESE E. MALLIAVIN, REMARK 3 MICHAEL NILGES (ARIA2ALPHA), WOLFGANG RIEPING, REMARK 3 MICHAEL HABECK, BENJAMIN BARDIAUX, AYMERIC BERNARD, REMARK 3 THERESE E. MALLIAVIN, MICHAEL NILGES (ARIA2ALPHA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8J9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037444. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 MED15_ABD3, 20 MM HEPES, 200 MM REMARK 210 SODIUM CHLORIDE, 1 MM TCEP, 6 % REMARK 210 V/V D2O, 94% H2O/6% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D CBCANH; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D HNCO; 3D HN(CA) REMARK 210 CO; 3D HBHA(CO)NH; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRFAM-SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 -43.97 -164.25 REMARK 500 1 HIS A 7 -23.33 -169.90 REMARK 500 1 ALA A 12 155.29 64.24 REMARK 500 1 ASN A 17 82.73 54.44 REMARK 500 1 PHE A 18 79.18 54.57 REMARK 500 1 SER A 19 -57.87 -123.70 REMARK 500 1 SER A 22 81.28 -155.46 REMARK 500 1 VAL A 30 -27.21 -144.26 REMARK 500 1 SER A 33 82.17 57.48 REMARK 500 1 SER A 37 64.89 -165.04 REMARK 500 1 SER A 41 72.32 -100.48 REMARK 500 1 SER A 42 14.21 -154.79 REMARK 500 1 LYS A 95 14.78 59.00 REMARK 500 2 HIS A 6 -44.85 -134.96 REMARK 500 2 ALA A 8 108.06 -161.73 REMARK 500 2 SER A 9 -57.35 -124.55 REMARK 500 2 ALA A 12 86.87 -69.40 REMARK 500 2 PRO A 15 91.80 -67.78 REMARK 500 2 VAL A 20 81.84 58.05 REMARK 500 2 LEU A 26 97.48 -68.46 REMARK 500 2 PRO A 29 95.90 -63.81 REMARK 500 2 VAL A 30 42.97 -94.03 REMARK 500 2 SER A 33 91.44 58.96 REMARK 500 2 SER A 41 3.48 -151.52 REMARK 500 2 ASP A 92 73.08 -119.47 REMARK 500 3 HIS A 4 -82.02 63.09 REMARK 500 3 HIS A 6 -49.64 -159.03 REMARK 500 3 ALA A 8 88.10 -156.27 REMARK 500 3 PRO A 15 99.22 -66.27 REMARK 500 3 GLN A 16 48.68 -109.87 REMARK 500 3 ASN A 17 94.90 58.28 REMARK 500 3 PRO A 21 96.68 -69.35 REMARK 500 3 SER A 22 71.07 -153.50 REMARK 500 3 LEU A 26 -79.65 63.12 REMARK 500 3 ASN A 27 91.15 60.75 REMARK 500 3 SER A 41 43.74 -89.62 REMARK 500 3 SER A 42 35.70 -86.45 REMARK 500 3 ASP A 92 79.52 -113.95 REMARK 500 3 ARG A 96 102.06 -56.04 REMARK 500 4 HIS A 4 -55.09 -135.57 REMARK 500 4 HIS A 6 -61.32 -145.03 REMARK 500 4 ALA A 8 86.59 -151.80 REMARK 500 4 GLN A 16 91.28 -69.63 REMARK 500 4 ASN A 17 -64.87 -160.72 REMARK 500 4 PRO A 23 -173.11 -67.33 REMARK 500 4 THR A 28 79.70 56.56 REMARK 500 4 ASN A 31 81.06 -166.06 REMARK 500 4 PRO A 32 90.32 -69.93 REMARK 500 4 SER A 34 80.47 56.81 REMARK 500 4 MET A 36 -25.70 -169.99 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36565 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF ABD3 (RESIDUES 453-561) OF HUMAN MED15 REMARK 900 ISOFORM 2 DBREF 8J9A A 10 118 UNP Q96RN5 MED15_HUMAN 453 561 SEQADV 8J9A MET A 1 UNP Q96RN5 INITIATING METHIONINE SEQADV 8J9A HIS A 2 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A HIS A 3 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A HIS A 4 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A HIS A 5 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A HIS A 6 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A HIS A 7 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A ALA A 8 UNP Q96RN5 EXPRESSION TAG SEQADV 8J9A SER A 9 UNP Q96RN5 EXPRESSION TAG SEQRES 1 A 118 MET HIS HIS HIS HIS HIS HIS ALA SER VAL THR ALA ARG SEQRES 2 A 118 THR PRO GLN ASN PHE SER VAL PRO SER PRO GLY PRO LEU SEQRES 3 A 118 ASN THR PRO VAL ASN PRO SER SER VAL MET SER PRO ALA SEQRES 4 A 118 GLY SER SER GLN ALA GLU GLU GLN GLN TYR LEU ASP LYS SEQRES 5 A 118 LEU LYS GLN LEU SER LYS TYR ILE GLU PRO LEU ARG ARG SEQRES 6 A 118 MET ILE ASN LYS ILE ASP LYS ASN GLU ASP ARG LYS LYS SEQRES 7 A 118 ASP LEU SER LYS MET LYS SER LEU LEU ASP ILE LEU THR SEQRES 8 A 118 ASP PRO SER LYS ARG CYS PRO LEU LYS THR LEU GLN LYS SEQRES 9 A 118 CYS GLU ILE ALA LEU GLU LYS LEU LYS ASN ASP MET ALA SEQRES 10 A 118 VAL HELIX 1 AA1 SER A 42 SER A 57 1 16 HELIX 2 AA2 GLU A 61 LYS A 72 1 12 HELIX 3 AA3 ASP A 79 THR A 91 1 13 HELIX 4 AA4 PRO A 98 ALA A 117 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1