HEADER LIGASE/INHIBITOR 15-MAY-23 8JE6 TITLE CRYSTAL STRUCTURE OF ANOPHELES CULICIFACIES PROLYL-TRNA SYNTHETASE TITLE 2 (ACPRS) IN COMPLEX WITH HALOFUGINONE AND ATP ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES CULICIFACIES; SOURCE 3 ORGANISM_TAXID: 139723; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS MALARIA, VECTOR, ANOPHELES, MOSQUITO, LARVICIDAL, AMINOACYL-TRNA KEYWDS 2 SYNTHETASE, LIGASE, LIGASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.GOSWAMI,Y.MANICKAM,S.GUPTA,J.CHHIBBER-GOEL,K.HARLOS,A.SHARMA REVDAT 1 27-NOV-24 8JE6 0 JRNL AUTH R.GOSWAMI,J.CHHIBBER-GOEL,Y.MANICKAM,S.GUPTA,K.HARLOS, JRNL AUTH 2 B.LALEU,A.SHARMA JRNL TITL TARGETING PROLYL-TRNA SYNTHETASE OF ANOPHELES CULICIFACIES JRNL TITL 2 FOR THE DEVELOPMENT OF NEW LARVICIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15RC1_3423: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.0720 - 5.9965 1.00 2851 149 0.1918 0.2656 REMARK 3 2 5.9965 - 4.7598 1.00 2796 122 0.1735 0.2084 REMARK 3 3 4.7598 - 4.1582 1.00 2796 136 0.1486 0.2323 REMARK 3 4 4.1582 - 3.7780 1.00 2750 152 0.1740 0.2893 REMARK 3 5 3.7780 - 3.5072 1.00 2759 135 0.1959 0.3030 REMARK 3 6 3.5072 - 3.3004 1.00 2762 135 0.2210 0.3062 REMARK 3 7 3.3004 - 3.1351 1.00 2754 116 0.2688 0.3619 REMARK 3 8 3.1351 - 2.9987 1.00 2777 125 0.2852 0.3529 REMARK 3 9 2.9987 - 2.8832 0.99 2695 140 0.3037 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7867 REMARK 3 ANGLE : 1.297 10728 REMARK 3 CHIRALITY : 0.070 1174 REMARK 3 PLANARITY : 0.010 1397 REMARK 3 DIHEDRAL : 7.110 4629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.3878 -12.0956 26.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.2708 REMARK 3 T33: 0.3080 T12: 0.0087 REMARK 3 T13: 0.0039 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.1004 L22: 0.6624 REMARK 3 L33: 0.7730 L12: -0.1477 REMARK 3 L13: 0.0970 L23: 0.1226 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0235 S13: -0.1004 REMARK 3 S21: -0.0071 S22: 0.0842 S23: 0.0336 REMARK 3 S31: 0.0321 S32: 0.0758 S33: -0.0367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 78.072 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7F9A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS III-C12: 1% NUCLEOSIDES MIX, REMARK 280 0.1 M BUFFER SYSTEM 3 AND 37.5% PRECIPITANT MIX 4., PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.89900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1218 REMARK 465 THR A 1219 REMARK 465 ARG A 1220 REMARK 465 LEU A 1221 REMARK 465 GLY A 1222 REMARK 465 GLU A 1297 REMARK 465 LYS A 1298 REMARK 465 THR A 1299 REMARK 465 HIS A 1300 REMARK 465 ILE A 1301 REMARK 465 ALA A 1302 REMARK 465 ARG A 1669 REMARK 465 ASP A 1670 REMARK 465 ASP A 1671 REMARK 465 ALA A 1672 REMARK 465 GLU A 1673 REMARK 465 ALA A 1674 REMARK 465 GLU A 1675 REMARK 465 ALA A 1676 REMARK 465 GLY A 1677 REMARK 465 ALA A 1678 REMARK 465 MET B 1218 REMARK 465 THR B 1219 REMARK 465 ARG B 1220 REMARK 465 LEU B 1221 REMARK 465 GLY B 1222 REMARK 465 GLU B 1297 REMARK 465 LYS B 1298 REMARK 465 THR B 1299 REMARK 465 HIS B 1300 REMARK 465 ILE B 1301 REMARK 465 ALA B 1302 REMARK 465 ARG B 1669 REMARK 465 ASP B 1670 REMARK 465 ASP B 1671 REMARK 465 ALA B 1672 REMARK 465 GLU B 1673 REMARK 465 ALA B 1674 REMARK 465 GLU B 1675 REMARK 465 ALA B 1676 REMARK 465 GLY B 1677 REMARK 465 ALA B 1678 REMARK 465 PRO B 1679 REMARK 465 ALA B 1680 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1224 CG CD OE1 OE2 REMARK 470 ARG A1291 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1303 CG OD1 OD2 REMARK 470 GLU A1318 CG CD OE1 OE2 REMARK 470 GLU A1321 CG CD OE1 OE2 REMARK 470 GLN A1342 CG CD OE1 NE2 REMARK 470 TYR A1344 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1345 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1387 CG CD CE NZ REMARK 470 GLU A1467 CG CD OE1 OE2 REMARK 470 LYS A1469 CG CD CE NZ REMARK 470 LYS A1471 CG CD CE NZ REMARK 470 ILE A1517 CG1 CG2 CD1 REMARK 470 THR A1518 OG1 CG2 REMARK 470 THR A1520 OG1 CG2 REMARK 470 THR A1521 OG1 CG2 REMARK 470 THR A1522 OG1 CG2 REMARK 470 GLU A1525 CG CD OE1 OE2 REMARK 470 ARG A1526 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1527 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1528 CG CD NE CZ NH1 NH2 REMARK 470 TYR A1530 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1548 CG CD OE1 OE2 REMARK 470 LYS A1578 CG CD CE NZ REMARK 470 GLN A1581 CG CD OE1 NE2 REMARK 470 LYS A1595 CG CD CE NZ REMARK 470 LYS A1599 CG CD CE NZ REMARK 470 LYS A1609 CG CD CE NZ REMARK 470 GLU A1612 OE1 OE2 REMARK 470 ARG A1624 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1631 CG CD CE NZ REMARK 470 GLN A1641 CG CD OE1 NE2 REMARK 470 GLU A1644 CG CD OE1 OE2 REMARK 470 ARG A1662 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1664 CG CD CE NZ REMARK 470 GLU A1666 CG CD OE1 OE2 REMARK 470 LYS A1684 CG CD CE NZ REMARK 470 LYS A1695 CG CD CE NZ REMARK 470 ILE A1696 CG1 CG2 CD1 REMARK 470 ASP A1697 CG OD1 OD2 REMARK 470 LYS A1699 CG CD CE NZ REMARK 470 VAL A1700 CG1 CG2 REMARK 470 LYS A1702 CG CD CE NZ REMARK 470 ARG A1710 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1711 CG1 CG2 REMARK 470 LYS A1713 CG CD CE NZ REMARK 470 ARG B1291 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1303 CG OD1 OD2 REMARK 470 GLU B1321 CG CD OE1 OE2 REMARK 470 LYS B1339 CG CD CE NZ REMARK 470 GLN B1342 CG CD OE1 NE2 REMARK 470 ARG B1345 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1467 CG CD OE1 OE2 REMARK 470 THR B1468 OG1 CG2 REMARK 470 GLU B1470 CG CD OE1 OE2 REMARK 470 ILE B1517 CG1 CG2 CD1 REMARK 470 THR B1518 OG1 CG2 REMARK 470 THR B1520 OG1 CG2 REMARK 470 THR B1521 OG1 CG2 REMARK 470 GLU B1525 CG CD OE1 OE2 REMARK 470 ARG B1526 CG CD NE CZ NH1 NH2 REMARK 470 TYR B1530 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B1542 CG CD CE NZ REMARK 470 LYS B1560 CG CD CE NZ REMARK 470 LYS B1578 CG CD CE NZ REMARK 470 LYS B1599 CG CD CE NZ REMARK 470 GLN B1602 CG CD OE1 NE2 REMARK 470 LYS B1609 CG CD CE NZ REMARK 470 GLU B1612 OE1 OE2 REMARK 470 LYS B1634 CG CD CE NZ REMARK 470 GLN B1641 CG CD OE1 NE2 REMARK 470 GLU B1644 CG CD OE1 OE2 REMARK 470 ARG B1662 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1684 CG CD CE NZ REMARK 470 LYS B1695 CG CD CE NZ REMARK 470 ILE B1696 CG1 CG2 CD1 REMARK 470 LYS B1702 CG CD CE NZ REMARK 470 ARG B1710 CG CD NE CZ NH1 NH2 REMARK 470 VAL B1711 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A1649 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO B1327 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO B1327 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO B1706 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B1706 C - N - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1230 74.52 64.79 REMARK 500 THR A1328 168.00 177.24 REMARK 500 ASP A1427 -71.92 -94.86 REMARK 500 ASP A1495 -160.16 -104.03 REMARK 500 THR A1518 -125.22 69.34 REMARK 500 THR A1645 44.93 -95.88 REMARK 500 LYS A1646 37.21 70.77 REMARK 500 ALA A1694 147.69 78.58 REMARK 500 ARG A1710 69.45 -64.78 REMARK 500 PHE A1714 -173.09 -170.19 REMARK 500 ASN B1230 73.89 64.32 REMARK 500 ASP B1495 -162.71 -104.27 REMARK 500 THR B1518 -166.72 -76.08 REMARK 500 THR B1520 31.59 -85.15 REMARK 500 TYR B1551 62.77 -114.91 REMARK 500 ASN B1592 -8.51 67.28 REMARK 500 THR B1645 34.68 -81.69 REMARK 500 LEU B1686 -63.34 -92.40 REMARK 500 ALA B1707 -69.56 -98.27 REMARK 500 CYS B1708 -159.46 52.95 REMARK 500 ARG B1710 -66.27 55.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1654 SG REMARK 620 2 CYS A1659 SG 112.9 REMARK 620 3 CYS A1703 SG 124.5 111.1 REMARK 620 4 CYS A1708 SG 93.2 108.4 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A1801 O2G REMARK 620 2 ANP A1801 O2B 60.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1654 SG REMARK 620 2 CYS B1659 SG 114.0 REMARK 620 3 CYS B1703 SG 109.8 95.9 REMARK 620 4 CYS B1708 SG 150.2 93.0 78.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B1801 O2G REMARK 620 2 ANP B1801 O2B 63.7 REMARK 620 N 1 DBREF1 8JE6 A 1219 1722 UNP A0A182M1F8_9DIPT DBREF2 8JE6 A A0A182M1F8 1219 1722 DBREF1 8JE6 B 1219 1722 UNP A0A182M1F8_9DIPT DBREF2 8JE6 B A0A182M1F8 1219 1722 SEQADV 8JE6 MET A 1218 UNP A0A182M1F INITIATING METHIONINE SEQADV 8JE6 MET B 1218 UNP A0A182M1F INITIATING METHIONINE SEQRES 1 A 505 MET THR ARG LEU GLY LEU GLU ALA THR LYS GLU ASP ASN SEQRES 2 A 505 LEU PRO ASP TRP TYR SER GLN VAL ILE THR LYS GLY GLU SEQRES 3 A 505 MET ILE GLU TYR TYR ASP VAL SER GLY CYS TYR ILE LEU SEQRES 4 A 505 ARG HIS TRP SER PHE ALA ILE TRP LYS ALA ILE ARG ASN SEQRES 5 A 505 TRP PHE ASP ALA GLU ILE THR ARG LEU GLY VAL LYS GLU SEQRES 6 A 505 CYS TYR PHE PRO ILE PHE VAL SER ARG ALA ALA LEU GLU SEQRES 7 A 505 ARG GLU LYS THR HIS ILE ALA ASP PHE ALA PRO GLU VAL SEQRES 8 A 505 ALA TRP VAL THR LYS SER GLY ASP SER GLU LEU ALA GLU SEQRES 9 A 505 PRO ILE ALA VAL ARG PRO THR SER GLU THR VAL MET TYR SEQRES 10 A 505 PRO ALA TYR ALA LYS TRP ILE GLN SER TYR ARG ASP LEU SEQRES 11 A 505 PRO ILE ARG LEU ASN GLN TRP ASN ASN VAL VAL ARG TRP SEQRES 12 A 505 GLU PHE LYS HIS PRO GLN PRO PHE LEU ARG THR ARG GLU SEQRES 13 A 505 PHE LEU TRP GLN GLU GLY HIS THR ALA PHE ALA THR GLN SEQRES 14 A 505 LYS GLU ALA ASP GLU GLU VAL LEU THR ILE LEU ASP LEU SEQRES 15 A 505 TYR ALA LYS VAL TYR THR ASP LEU LEU ALA ILE PRO VAL SEQRES 16 A 505 VAL LYS GLY ARG LYS THR GLU LYS GLU LYS PHE ALA GLY SEQRES 17 A 505 GLY ASP TYR THR THR THR VAL GLU ALA TYR ILE SER ALA SEQRES 18 A 505 SER GLY ARG ALA ILE GLN GLY ALA THR SER HIS HIS LEU SEQRES 19 A 505 GLY GLN ASN PHE SER ARG MET PHE ASP ILE VAL TYR GLU SEQRES 20 A 505 HIS PRO GLU THR LYS GLU LYS GLU TYR VAL PHE GLN ASN SEQRES 21 A 505 SER TRP GLY ILE THR THR ARG THR ILE GLY VAL MET ILE SEQRES 22 A 505 MET VAL HIS ALA ASP ASN GLN GLY LEU VAL LEU PRO PRO SEQRES 23 A 505 ARG VAL ALA CYS ILE GLN VAL VAL ILE VAL PRO CYS GLY SEQRES 24 A 505 ILE THR ALA THR THR THR ASP ASP GLU ARG ARG ARG LEU SEQRES 25 A 505 TYR GLU SER CYS ARG GLU LEU GLU GLN THR PHE VAL LYS SEQRES 26 A 505 ALA GLY ILE ARG CYS GLU GLY ASP TYR ARG ASP ASN TYR SEQRES 27 A 505 SER PRO GLY TRP LYS TYR ASN HIS TRP GLU LEU LYS GLY SEQRES 28 A 505 VAL PRO VAL ARG ILE GLU LEU GLY PHE LYS ASP LEU GLN SEQRES 29 A 505 ASN ASP GLN PHE VAL ALA VAL ARG ARG ASP ASN GLY ALA SEQRES 30 A 505 LYS GLN THR ILE LYS ARG ALA GLN ALA THR VAL GLU MET SEQRES 31 A 505 PRO LYS LEU LEU GLU THR ILE HIS THR SER MET TYR GLU SEQRES 32 A 505 ARG ALA GLU ARG ASP LEU GLN SER HIS THR LYS LEU THR SEQRES 33 A 505 LYS GLN TRP ALA GLU PHE LEU GLN PHE LEU GLU THR LYS SEQRES 34 A 505 ASN ILE ILE MET ALA PRO PHE CYS GLY GLU ILE SER CYS SEQRES 35 A 505 GLU ASP ARG ILE LYS ALA GLU SER ALA ARG ASP ASP ALA SEQRES 36 A 505 GLU ALA GLU ALA GLY ALA PRO ALA MET GLY ALA LYS SER SEQRES 37 A 505 LEU CYS ILE PRO PHE GLU GLN PRO ALA LYS ILE ASP PRO SEQRES 38 A 505 LYS VAL ASP LYS CYS VAL HIS PRO ALA CYS GLY ARG VAL SEQRES 39 A 505 ALA LYS PHE TYR THR LEU PHE GLY ARG SER TYR SEQRES 1 B 505 MET THR ARG LEU GLY LEU GLU ALA THR LYS GLU ASP ASN SEQRES 2 B 505 LEU PRO ASP TRP TYR SER GLN VAL ILE THR LYS GLY GLU SEQRES 3 B 505 MET ILE GLU TYR TYR ASP VAL SER GLY CYS TYR ILE LEU SEQRES 4 B 505 ARG HIS TRP SER PHE ALA ILE TRP LYS ALA ILE ARG ASN SEQRES 5 B 505 TRP PHE ASP ALA GLU ILE THR ARG LEU GLY VAL LYS GLU SEQRES 6 B 505 CYS TYR PHE PRO ILE PHE VAL SER ARG ALA ALA LEU GLU SEQRES 7 B 505 ARG GLU LYS THR HIS ILE ALA ASP PHE ALA PRO GLU VAL SEQRES 8 B 505 ALA TRP VAL THR LYS SER GLY ASP SER GLU LEU ALA GLU SEQRES 9 B 505 PRO ILE ALA VAL ARG PRO THR SER GLU THR VAL MET TYR SEQRES 10 B 505 PRO ALA TYR ALA LYS TRP ILE GLN SER TYR ARG ASP LEU SEQRES 11 B 505 PRO ILE ARG LEU ASN GLN TRP ASN ASN VAL VAL ARG TRP SEQRES 12 B 505 GLU PHE LYS HIS PRO GLN PRO PHE LEU ARG THR ARG GLU SEQRES 13 B 505 PHE LEU TRP GLN GLU GLY HIS THR ALA PHE ALA THR GLN SEQRES 14 B 505 LYS GLU ALA ASP GLU GLU VAL LEU THR ILE LEU ASP LEU SEQRES 15 B 505 TYR ALA LYS VAL TYR THR ASP LEU LEU ALA ILE PRO VAL SEQRES 16 B 505 VAL LYS GLY ARG LYS THR GLU LYS GLU LYS PHE ALA GLY SEQRES 17 B 505 GLY ASP TYR THR THR THR VAL GLU ALA TYR ILE SER ALA SEQRES 18 B 505 SER GLY ARG ALA ILE GLN GLY ALA THR SER HIS HIS LEU SEQRES 19 B 505 GLY GLN ASN PHE SER ARG MET PHE ASP ILE VAL TYR GLU SEQRES 20 B 505 HIS PRO GLU THR LYS GLU LYS GLU TYR VAL PHE GLN ASN SEQRES 21 B 505 SER TRP GLY ILE THR THR ARG THR ILE GLY VAL MET ILE SEQRES 22 B 505 MET VAL HIS ALA ASP ASN GLN GLY LEU VAL LEU PRO PRO SEQRES 23 B 505 ARG VAL ALA CYS ILE GLN VAL VAL ILE VAL PRO CYS GLY SEQRES 24 B 505 ILE THR ALA THR THR THR ASP ASP GLU ARG ARG ARG LEU SEQRES 25 B 505 TYR GLU SER CYS ARG GLU LEU GLU GLN THR PHE VAL LYS SEQRES 26 B 505 ALA GLY ILE ARG CYS GLU GLY ASP TYR ARG ASP ASN TYR SEQRES 27 B 505 SER PRO GLY TRP LYS TYR ASN HIS TRP GLU LEU LYS GLY SEQRES 28 B 505 VAL PRO VAL ARG ILE GLU LEU GLY PHE LYS ASP LEU GLN SEQRES 29 B 505 ASN ASP GLN PHE VAL ALA VAL ARG ARG ASP ASN GLY ALA SEQRES 30 B 505 LYS GLN THR ILE LYS ARG ALA GLN ALA THR VAL GLU MET SEQRES 31 B 505 PRO LYS LEU LEU GLU THR ILE HIS THR SER MET TYR GLU SEQRES 32 B 505 ARG ALA GLU ARG ASP LEU GLN SER HIS THR LYS LEU THR SEQRES 33 B 505 LYS GLN TRP ALA GLU PHE LEU GLN PHE LEU GLU THR LYS SEQRES 34 B 505 ASN ILE ILE MET ALA PRO PHE CYS GLY GLU ILE SER CYS SEQRES 35 B 505 GLU ASP ARG ILE LYS ALA GLU SER ALA ARG ASP ASP ALA SEQRES 36 B 505 GLU ALA GLU ALA GLY ALA PRO ALA MET GLY ALA LYS SER SEQRES 37 B 505 LEU CYS ILE PRO PHE GLU GLN PRO ALA LYS ILE ASP PRO SEQRES 38 B 505 LYS VAL ASP LYS CYS VAL HIS PRO ALA CYS GLY ARG VAL SEQRES 39 B 505 ALA LYS PHE TYR THR LEU PHE GLY ARG SER TYR HET ANP A1801 31 HET HFG A1802 24 HET MG A1803 1 HET ZN A1804 1 HET ANP B1801 31 HET HFG B1802 24 HET MG B1803 1 HET ZN B1804 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM HFG 7-BROMO-6-CHLORO-3-{3-[(2R,3S)-3-HYDROXYPIPERIDIN-2- HETNAM 2 HFG YL]-2-OXOPROPYL}QUINAZOLIN-4(3H)-ONE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN HFG HALOFUGINONE FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 HFG 2(C16 H17 BR CL N3 O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 ZN 2(ZN 2+) HELIX 1 AA1 ASN A 1230 GLY A 1242 1 13 HELIX 2 AA2 ARG A 1257 GLY A 1279 1 23 HELIX 3 AA3 ARG A 1291 GLU A 1295 1 5 HELIX 4 AA4 PHE A 1304 GLU A 1307 5 4 HELIX 5 AA5 SER A 1329 ILE A 1341 1 13 HELIX 6 AA6 SER A 1343 LEU A 1347 5 5 HELIX 7 AA7 THR A 1385 LEU A 1407 1 23 HELIX 8 AA8 GLN A 1453 PHE A 1459 1 7 HELIX 9 AA9 THR A 1483 ALA A 1494 1 12 HELIX 10 AB1 THR A 1522 ALA A 1543 1 22 HELIX 11 AB2 SER A 1556 LYS A 1567 1 12 HELIX 12 AB3 GLY A 1576 ASN A 1582 1 7 HELIX 13 AB4 GLN A 1602 HIS A 1629 1 28 HELIX 14 AB5 GLN A 1635 THR A 1645 1 11 HELIX 15 AB6 GLU A 1656 ALA A 1668 1 13 HELIX 16 AB7 ASN B 1230 GLY B 1242 1 13 HELIX 17 AB8 ARG B 1257 LEU B 1278 1 22 HELIX 18 AB9 ARG B 1291 GLU B 1295 1 5 HELIX 19 AC1 PHE B 1304 GLU B 1307 5 4 HELIX 20 AC2 SER B 1329 ILE B 1341 1 13 HELIX 21 AC3 SER B 1343 LEU B 1347 5 5 HELIX 22 AC4 THR B 1385 LEU B 1407 1 23 HELIX 23 AC5 GLN B 1453 ASP B 1460 1 8 HELIX 24 AC6 THR B 1483 ALA B 1494 1 12 HELIX 25 AC7 THR B 1522 ALA B 1543 1 22 HELIX 26 AC8 SER B 1556 GLY B 1568 1 13 HELIX 27 AC9 GLY B 1576 ASN B 1582 1 7 HELIX 28 AD1 GLN B 1602 HIS B 1629 1 28 HELIX 29 AD2 GLN B 1635 THR B 1645 1 11 HELIX 30 AD3 GLU B 1656 ALA B 1668 1 13 SHEET 1 AA1 2 ILE A1245 GLU A1246 0 SHEET 2 AA1 2 ILE A1255 LEU A1256 -1 O ILE A1255 N GLU A1246 SHEET 1 AA211 LYS A1281 GLU A1282 0 SHEET 2 AA211 ILE A1349 VAL A1358 1 O ARG A1350 N LYS A1281 SHEET 3 AA211 GLU A1373 PHE A1383 -1 O TRP A1376 N ASN A1355 SHEET 4 AA211 PHE A1475 THR A1482 -1 O PHE A1475 N PHE A1383 SHEET 5 AA211 ARG A1441 GLY A1452 -1 N HIS A1449 O SER A1478 SHEET 6 AA211 TYR A1428 ILE A1436 -1 N ILE A1436 O ARG A1441 SHEET 7 AA211 VAL A1413 ARG A1416 -1 N VAL A1413 O GLU A1433 SHEET 8 AA211 LYS A1684 PRO A1689 -1 O ILE A1688 N ARG A1416 SHEET 9 AA211 PHE A1714 GLY A1719 -1 O LEU A1717 N LEU A1686 SHEET 10 AA211 ILE A1648 PHE A1653 -1 N PHE A1653 O PHE A1714 SHEET 11 AA211 THR A1630 LEU A1632 1 N LYS A1631 O ILE A1648 SHEET 1 AA3 6 PHE A1288 SER A1290 0 SHEET 2 AA3 6 SER A1317 VAL A1325 -1 O ALA A1324 N VAL A1289 SHEET 3 AA3 6 ALA A1309 SER A1314 -1 N SER A1314 O SER A1317 SHEET 4 AA3 6 ALA B1309 SER B1314 -1 O TRP B1310 N LYS A1313 SHEET 5 AA3 6 SER B1317 VAL B1325 -1 O SER B1317 N SER B1314 SHEET 6 AA3 6 PHE B1288 SER B1290 -1 N VAL B1289 O ALA B1324 SHEET 1 AA4 2 VAL A1462 GLU A1464 0 SHEET 2 AA4 2 LYS A1471 TYR A1473 -1 O GLU A1472 N TYR A1463 SHEET 1 AA5 5 CYS A1547 GLY A1549 0 SHEET 2 AA5 5 VAL A1510 PRO A1514 1 N VAL A1510 O GLU A1548 SHEET 3 AA5 5 VAL A1571 LEU A1575 1 O ILE A1573 N VAL A1511 SHEET 4 AA5 5 GLN A1584 ARG A1589 -1 O VAL A1588 N ARG A1572 SHEET 5 AA5 5 LYS A1595 LYS A1599 -1 O ILE A1598 N PHE A1585 SHEET 1 AA6 2 ILE B1245 TYR B1247 0 SHEET 2 AA6 2 TYR B1254 LEU B1256 -1 O ILE B1255 N GLU B1246 SHEET 1 AA711 LYS B1281 GLU B1282 0 SHEET 2 AA711 ILE B1349 VAL B1358 1 O ARG B1350 N LYS B1281 SHEET 3 AA711 GLU B1373 PHE B1383 -1 O TRP B1376 N ASN B1355 SHEET 4 AA711 PHE B1475 THR B1482 -1 O PHE B1475 N PHE B1383 SHEET 5 AA711 ARG B1441 GLY B1452 -1 N HIS B1449 O SER B1478 SHEET 6 AA711 TYR B1428 ILE B1436 -1 N ILE B1436 O ARG B1441 SHEET 7 AA711 VAL B1413 ARG B1416 -1 N VAL B1413 O GLU B1433 SHEET 8 AA711 LYS B1684 PRO B1689 -1 O ILE B1688 N ARG B1416 SHEET 9 AA711 PHE B1714 GLY B1719 -1 O LEU B1717 N LEU B1686 SHEET 10 AA711 ILE B1648 PHE B1653 -1 N ALA B1651 O THR B1716 SHEET 11 AA711 THR B1630 LEU B1632 1 N LYS B1631 O MET B1650 SHEET 1 AA8 2 VAL B1462 GLU B1464 0 SHEET 2 AA8 2 LYS B1471 TYR B1473 -1 O GLU B1472 N TYR B1463 SHEET 1 AA9 5 CYS B1547 GLY B1549 0 SHEET 2 AA9 5 VAL B1510 PRO B1514 1 N VAL B1510 O GLU B1548 SHEET 3 AA9 5 VAL B1571 LEU B1575 1 O ILE B1573 N VAL B1511 SHEET 4 AA9 5 GLN B1584 ARG B1589 -1 O VAL B1586 N GLU B1574 SHEET 5 AA9 5 LYS B1595 LYS B1599 -1 O GLN B1596 N ALA B1587 LINK SG CYS A1654 ZN ZN A1804 1555 1555 2.36 LINK SG CYS A1659 ZN ZN A1804 1555 1555 2.30 LINK SG CYS A1703 ZN ZN A1804 1555 1555 2.45 LINK SG CYS A1708 ZN ZN A1804 1555 1555 2.12 LINK O2G ANP A1801 MG MG A1803 1555 1555 2.15 LINK O2B ANP A1801 MG MG A1803 1555 1555 2.58 LINK SG CYS B1654 ZN ZN B1804 1555 1555 2.37 LINK SG CYS B1659 ZN ZN B1804 1555 1555 2.33 LINK SG CYS B1703 ZN ZN B1804 1555 1555 2.72 LINK SG CYS B1708 ZN ZN B1804 1555 1555 2.66 LINK O2G ANP B1801 MG MG B1803 1555 1555 2.64 LINK O2B ANP B1801 MG MG B1803 1555 1555 2.10 CISPEP 1 LEU A 1347 PRO A 1348 0 6.04 CISPEP 2 LEU B 1347 PRO B 1348 0 10.00 CRYST1 80.978 69.798 106.839 90.00 105.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012349 0.000000 0.003400 0.00000 SCALE2 0.000000 0.014327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009708 0.00000