HEADER SUGAR BINDING PROTEIN 15-MAY-23 8JEB TITLE CRYSTAL STRUCTURE OF CGL1 FROM CRASSOSTREA GIGAS, MANNOTETRAOSE-BOUND TITLE 2 FORM (CGL1/MAN(ALPHA)1-2MAN(ALPHA)1-2MAN(ALPHA)1-6MAN) CAVEAT 8JEB MAN C 1 HAS WRONG CHIRALITY AT ATOM C1 MAN E 1 HAS WRONG CAVEAT 2 8JEB CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NATTERIN-3; COMPND 3 CHAIN: B, A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRASSOSTREA GIGAS; SOURCE 3 ORGANISM_COMMON: PACIFIC OYSTER; SOURCE 4 ORGANISM_TAXID: 29159 KEYWDS CRASSOSTREA GIGAS, CGL1, MANNOTETRAOSE, MAN4, COMPLEX STRUCTURE, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO,T.HATAKEYAMA REVDAT 2 17-JAN-24 8JEB 1 JRNL REVDAT 1 25-OCT-23 8JEB 0 JRNL AUTH T.HATAKEYAMA,K.MASUDA,M.KUDO,K.TANAKA,A.TAKEUCHI,H.UNNO JRNL TITL MANNOSE OLIGOSACCHARIDE RECOGNITION OF CGL1, A JRNL TITL 2 MANNOSE-SPECIFIC LECTIN CONTAINING DM9 MOTIFS FROM JRNL TITL 3 CRASSOSTREA GIGAS, REVEALED BY X-RAY CRYSTALLOGRAPHIC JRNL TITL 4 ANALYSIS. JRNL REF J.BIOCHEM. V. 175 35 2023 JRNL REFN ISSN 0021-924X JRNL PMID 37793172 JRNL DOI 10.1093/JB/MVAD073 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 68858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.035 REMARK 3 FREE R VALUE TEST SET COUNT : 3467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00200 REMARK 3 B22 (A**2) : -0.00200 REMARK 3 B33 (A**2) : 0.00300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2341 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2163 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3177 ; 1.655 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5006 ; 0.579 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ; 4.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;12.654 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.313 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2614 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 502 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 363 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 58 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1167 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.045 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 1.092 ; 1.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1132 ; 1.057 ; 1.406 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1408 ; 1.483 ; 2.528 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1409 ; 1.483 ; 2.528 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 3.005 ; 1.679 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1205 ; 3.004 ; 1.680 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 4.286 ; 2.961 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1770 ; 4.285 ; 2.961 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CHIRALITY ERROR IS DUE TO BY THE ORIENTATIONS AND INTERACTIONS REMARK 3 BETWEEN RESIDUES AND LIGANDS IN THE PROTEIN-LIGAND COMPLEX REMARK 3 STRUCTURE. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THEIR RIDING POSITIONS REMARK 4 REMARK 4 8JEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.201 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6.5), 20% PEG 8000, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.24750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.24750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 38.20000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -41.24750 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 120 31.13 71.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 6 OG REMARK 620 2 HOH B2111 O 78.7 REMARK 620 3 HOH B2117 O 95.2 86.3 REMARK 620 4 HOH B2193 O 90.2 165.9 85.9 REMARK 620 5 HOH B2212 O 86.5 93.4 178.2 94.7 REMARK 620 6 HOH B2251 O 171.2 95.5 91.0 96.5 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 10 OD1 REMARK 620 2 HOH B2103 O 85.7 REMARK 620 3 HOH B2129 O 84.3 78.0 REMARK 620 4 HOH B2148 O 85.4 91.9 166.1 REMARK 620 5 HOH B2171 O 89.5 171.9 108.0 81.3 REMARK 620 6 HOH B2245 O 177.5 92.0 94.2 95.7 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 94 OD1 REMARK 620 2 HOH B2133 O 86.9 REMARK 620 3 HOH B2157 O 85.0 89.5 REMARK 620 4 HOH B2191 O 89.8 176.6 90.8 REMARK 620 5 HOH B2209 O 170.4 94.3 85.5 89.1 REMARK 620 6 HOH A 334 O 89.8 86.5 173.6 92.9 99.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2102 O REMARK 620 2 ASN A 10 OD1 96.0 REMARK 620 3 HOH A 321 O 174.4 78.6 REMARK 620 4 HOH A 328 O 85.4 86.2 92.8 REMARK 620 5 HOH A 335 O 87.2 94.9 94.5 172.6 REMARK 620 6 HOH A 430 O 92.9 170.7 92.5 91.9 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 6 OG REMARK 620 2 HOH A 305 O 78.5 REMARK 620 3 HOH A 324 O 97.0 83.3 REMARK 620 4 HOH A 401 O 90.4 165.3 88.5 REMARK 620 N 1 2 3 DBREF 8JEB B 2 143 UNP K1QRB6 K1QRB6_CRAGI 2 143 DBREF 8JEB A 2 143 UNP K1QRB6 K1QRB6_CRAGI 2 143 SEQRES 1 B 142 AYA GLU TRP VAL SER THR THR GLY ASN THR ILE PRO ASP SEQRES 2 B 142 ASN ALA ILE ARG ALA GLY TYR ASP ILE ASN LYS LYS ALA SEQRES 3 B 142 LEU PHE ILE ALA ARG ALA VAL VAL SER GLY GLU MET THR SEQRES 4 B 142 PRO GLY LYS CYS GLY THR HIS LEU GLU GLY ALA HIS ILE SEQRES 5 B 142 PRO PHE ALA GLY LYS GLU HIS ILE ILE GLN ASN TYR GLU SEQRES 6 B 142 VAL LEU VAL TYR PRO ILE ASN ALA LEU GLY PHE LEU ASP SEQRES 7 B 142 TRP GLN GLN ALA SER ASN GLY ASP VAL PRO GLY ASN ALA SEQRES 8 B 142 ILE ASP THR ALA SER GLY ILE TYR ILE GLY ARG VAL LEU SEQRES 9 B 142 TYR SER GLY SER LEU ILE PRO CYS LYS ILE HIS THR GLY SEQRES 10 B 142 PHE LYS VAL ALA TYR MET GLY PHE ALA GLY LYS GLU HIS SEQRES 11 B 142 GLN SER LYS GLU TYR GLU ALA LEU TYR LYS VAL ILE SEQRES 1 A 142 AYA GLU TRP VAL SER THR THR GLY ASN THR ILE PRO ASP SEQRES 2 A 142 ASN ALA ILE ARG ALA GLY TYR ASP ILE ASN LYS LYS ALA SEQRES 3 A 142 LEU PHE ILE ALA ARG ALA VAL VAL SER GLY GLU MET THR SEQRES 4 A 142 PRO GLY LYS CYS GLY THR HIS LEU GLU GLY ALA HIS ILE SEQRES 5 A 142 PRO PHE ALA GLY LYS GLU HIS ILE ILE GLN ASN TYR GLU SEQRES 6 A 142 VAL LEU VAL TYR PRO ILE ASN ALA LEU GLY PHE LEU ASP SEQRES 7 A 142 TRP GLN GLN ALA SER ASN GLY ASP VAL PRO GLY ASN ALA SEQRES 8 A 142 ILE ASP THR ALA SER GLY ILE TYR ILE GLY ARG VAL LEU SEQRES 9 A 142 TYR SER GLY SER LEU ILE PRO CYS LYS ILE HIS THR GLY SEQRES 10 A 142 PHE LYS VAL ALA TYR MET GLY PHE ALA GLY LYS GLU HIS SEQRES 11 A 142 GLN SER LYS GLU TYR GLU ALA LEU TYR LYS VAL ILE MODRES 8JEB AYA B 2 ALA MODIFIED RESIDUE MODRES 8JEB AYA A 2 ALA MODIFIED RESIDUE HET AYA B 2 8 HET AYA A 2 8 HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 11 HET MAN D 2 11 HET MAN E 1 12 HET MAN E 2 11 HET MAN F 1 11 HET MAN F 2 11 HET ACY B2001 4 HET ACY B2002 4 HET MG B2003 1 HET MG B2004 1 HET MG B2005 1 HET ACY A 201 4 HET ACY A 202 4 HET ACY A 203 4 HET MG A 204 1 HET MG A 205 1 HETNAM AYA N-ACETYLALANINE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ACY ACETIC ACID HETNAM MG MAGNESIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 AYA 2(C5 H9 N O3) FORMUL 3 MAN 8(C6 H12 O6) FORMUL 7 ACY 5(C2 H4 O2) FORMUL 9 MG 5(MG 2+) FORMUL 17 HOH *308(H2 O) HELIX 1 AA1 GLY A 118 LYS A 120 5 3 SHEET 1 AA1 4 GLU B 3 THR B 8 0 SHEET 2 AA1 4 ASN B 64 VAL B 69 -1 O VAL B 69 N GLU B 3 SHEET 3 AA1 4 ALA B 27 VAL B 35 -1 N ILE B 30 O LEU B 68 SHEET 4 AA1 4 ARG B 18 TYR B 21 -1 N GLY B 20 O LEU B 28 SHEET 1 AA2 4 GLU B 3 THR B 8 0 SHEET 2 AA2 4 ASN B 64 VAL B 69 -1 O VAL B 69 N GLU B 3 SHEET 3 AA2 4 ALA B 27 VAL B 35 -1 N ILE B 30 O LEU B 68 SHEET 4 AA2 4 GLU B 38 CYS B 44 -1 O CYS B 44 N PHE B 29 SHEET 1 AA3 2 ALA B 51 PHE B 55 0 SHEET 2 AA3 2 LYS B 58 ILE B 62 -1 O HIS B 60 N ILE B 53 SHEET 1 AA4 4 PHE B 77 SER B 84 0 SHEET 2 AA4 4 GLU B 135 ILE B 143 -1 O VAL B 142 N PHE B 77 SHEET 3 AA4 4 ILE B 99 TYR B 106 -1 N ARG B 103 O GLU B 137 SHEET 4 AA4 4 ASP B 94 ALA B 96 -1 N THR B 95 O ILE B 99 SHEET 1 AA5 6 PHE B 77 SER B 84 0 SHEET 2 AA5 6 GLU B 135 ILE B 143 -1 O VAL B 142 N PHE B 77 SHEET 3 AA5 6 ILE B 99 TYR B 106 -1 N ARG B 103 O GLU B 137 SHEET 4 AA5 6 SER B 109 HIS B 116 -1 O ILE B 111 N VAL B 104 SHEET 5 AA5 6 VAL B 121 PHE B 126 -1 O VAL B 121 N HIS B 116 SHEET 6 AA5 6 LYS B 129 SER B 133 -1 O HIS B 131 N MET B 124 SHEET 1 AA6 4 GLU A 3 THR A 8 0 SHEET 2 AA6 4 ASN A 64 VAL A 69 -1 O VAL A 69 N GLU A 3 SHEET 3 AA6 4 ALA A 27 VAL A 35 -1 N ARG A 32 O GLU A 66 SHEET 4 AA6 4 ARG A 18 TYR A 21 -1 N GLY A 20 O LEU A 28 SHEET 1 AA7 4 GLU A 3 THR A 8 0 SHEET 2 AA7 4 ASN A 64 VAL A 69 -1 O VAL A 69 N GLU A 3 SHEET 3 AA7 4 ALA A 27 VAL A 35 -1 N ARG A 32 O GLU A 66 SHEET 4 AA7 4 GLU A 38 CYS A 44 -1 O THR A 40 N ALA A 33 SHEET 1 AA8 2 ALA A 51 PHE A 55 0 SHEET 2 AA8 2 LYS A 58 ILE A 62 -1 O HIS A 60 N ILE A 53 SHEET 1 AA9 4 PHE A 77 SER A 84 0 SHEET 2 AA9 4 GLU A 135 ILE A 143 -1 O TYR A 136 N ALA A 83 SHEET 3 AA9 4 ILE A 99 TYR A 106 -1 N ARG A 103 O GLU A 137 SHEET 4 AA9 4 ASP A 94 ALA A 96 -1 N ALA A 96 O ILE A 99 SHEET 1 AB1 6 PHE A 77 SER A 84 0 SHEET 2 AB1 6 GLU A 135 ILE A 143 -1 O TYR A 136 N ALA A 83 SHEET 3 AB1 6 ILE A 99 TYR A 106 -1 N ARG A 103 O GLU A 137 SHEET 4 AB1 6 SER A 109 HIS A 116 -1 O CYS A 113 N GLY A 102 SHEET 5 AB1 6 VAL A 121 PHE A 126 -1 O VAL A 121 N HIS A 116 SHEET 6 AB1 6 LYS A 129 SER A 133 -1 O SER A 133 N ALA A 122 LINK C AYA B 2 N GLU B 3 1555 1555 1.32 LINK C AYA A 2 N GLU A 3 1555 1555 1.30 LINK O6 MAN C 1 C1 MAN C 2 1555 1555 1.44 LINK O2 MAN C 2 C1 MAN F 1 1555 4555 1.48 LINK O2 MAN D 1 C1 MAN D 2 1555 1555 1.43 LINK C1 MAN D 1 O2 MAN E 2 1555 3556 1.52 LINK O6 MAN E 1 C1 MAN E 2 1555 1555 1.45 LINK O2 MAN F 1 C1 MAN F 2 1555 1555 1.38 LINK OG SER B 6 MG MG B2003 1555 1555 2.22 LINK OD1 ASN B 10 MG MG B2005 1555 1555 2.05 LINK OD1 ASP B 94 MG MG B2004 1555 1555 2.03 LINK MG MG B2003 O HOH B2111 1555 1555 2.31 LINK MG MG B2003 O HOH B2117 1555 1555 2.16 LINK MG MG B2003 O HOH B2193 1555 1555 2.51 LINK MG MG B2003 O HOH B2212 1555 1555 2.19 LINK MG MG B2003 O HOH B2251 1555 1555 2.13 LINK MG MG B2004 O HOH B2133 1555 1555 2.15 LINK MG MG B2004 O HOH B2157 1555 1555 2.09 LINK MG MG B2004 O HOH B2191 1555 1555 2.12 LINK MG MG B2004 O HOH B2209 1555 1555 2.00 LINK MG MG B2004 O HOH A 334 1555 1554 2.11 LINK MG MG B2005 O HOH B2103 1555 1555 2.13 LINK MG MG B2005 O HOH B2129 1555 1555 2.18 LINK MG MG B2005 O HOH B2148 1555 1555 2.16 LINK MG MG B2005 O HOH B2171 1555 1555 1.95 LINK MG MG B2005 O HOH B2245 1555 1555 2.12 LINK O HOH B2102 MG MG A 204 4455 1555 2.18 LINK OG SER A 6 MG MG A 205 1555 1555 2.27 LINK OD1 ASN A 10 MG MG A 204 1555 1555 2.10 LINK MG MG A 204 O HOH A 321 1555 1555 2.13 LINK MG MG A 204 O HOH A 328 1555 1555 2.04 LINK MG MG A 204 O HOH A 335 1555 1555 2.00 LINK MG MG A 204 O HOH A 430 1555 4456 2.11 LINK MG MG A 205 O HOH A 305 1555 1555 2.40 LINK MG MG A 205 O HOH A 324 1555 1555 2.19 LINK MG MG A 205 O HOH A 401 1555 1555 2.59 CRYST1 76.400 82.495 44.201 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022624 0.00000 HETATM 1 N AYA B 2 7.813 22.655 1.388 1.00 13.84 N0 HETATM 2 CA AYA B 2 8.441 23.923 1.633 1.00 14.15 C0 HETATM 3 CB AYA B 2 9.958 23.759 1.691 1.00 15.64 C0 HETATM 4 C AYA B 2 8.029 24.926 0.556 1.00 14.05 C0 HETATM 5 O AYA B 2 7.659 24.451 -0.601 1.00 16.17 O0 HETATM 6 CT AYA B 2 6.507 22.503 1.557 1.00 13.00 C0 HETATM 7 OT AYA B 2 5.788 23.445 1.874 1.00 15.31 O0 HETATM 8 CM AYA B 2 5.952 21.170 1.186 1.00 15.52 C0