HEADER HYDROLASE 23-MAY-23 8JHL TITLE GDP-BOUND KRAS G12D IN COMPLEX WITH YK-8S COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS, N-TERMINALLY PROCESSED; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE/INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.M.ZHANG,R.L.WANG REVDAT 1 31-JAN-24 8JHL 0 JRNL AUTH Z.YU,X.HE,R.WANG,X.XU,Z.ZHANG,K.DING,Z.M.ZHANG,Y.TAN,Z.LI JRNL TITL SIMULTANEOUS COVALENT MODIFICATION OF K-RAS(G12D) AND JRNL TITL 2 K-RAS(G12C) WITH TUNABLE OXIRANE ELECTROPHILES. JRNL REF J.AM.CHEM.SOC. V. 145 20403 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37534597 JRNL DOI 10.1021/JACS.3C05899 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 21385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1765 - 5.1759 1.00 1300 146 0.1772 0.1888 REMARK 3 2 5.1759 - 4.1095 1.00 1307 139 0.1361 0.1677 REMARK 3 3 4.1095 - 3.5904 1.00 1295 150 0.1493 0.1599 REMARK 3 4 3.5904 - 3.2623 1.00 1310 142 0.1579 0.1881 REMARK 3 5 3.2623 - 3.0285 1.00 1299 140 0.1600 0.2331 REMARK 3 6 3.0285 - 2.8500 1.00 1297 149 0.1706 0.1951 REMARK 3 7 2.8500 - 2.7073 1.00 1320 143 0.1770 0.2577 REMARK 3 8 2.7073 - 2.5895 1.00 1287 139 0.1698 0.2410 REMARK 3 9 2.5895 - 2.4898 1.00 1315 142 0.1815 0.2136 REMARK 3 10 2.4898 - 2.4039 1.00 1293 145 0.1783 0.2588 REMARK 3 11 2.4039 - 2.3287 1.00 1307 144 0.1736 0.2661 REMARK 3 12 2.3287 - 2.2622 1.00 1306 149 0.1895 0.2242 REMARK 3 13 2.2622 - 2.2026 0.97 1246 145 0.1800 0.2736 REMARK 3 14 2.2026 - 2.1489 0.94 1237 143 0.1827 0.2601 REMARK 3 15 2.1489 - 2.1000 0.87 1119 131 0.1867 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.213 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.617 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1460 REMARK 3 ANGLE : 1.058 1980 REMARK 3 CHIRALITY : 0.040 217 REMARK 3 PLANARITY : 0.004 245 REMARK 3 DIHEDRAL : 18.130 546 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0250 23.6658 -0.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2148 REMARK 3 T33: 0.2167 T12: -0.0486 REMARK 3 T13: -0.0600 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.8459 L22: 2.8203 REMARK 3 L33: 1.1169 L12: -0.4210 REMARK 3 L13: 0.0139 L23: 0.4050 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.2440 S13: -0.1267 REMARK 3 S21: -0.3989 S22: 0.1455 S23: 0.5045 REMARK 3 S31: 0.0588 S32: -0.2189 S33: -0.0566 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8542 29.9515 7.5096 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1804 REMARK 3 T33: 0.2369 T12: -0.0146 REMARK 3 T13: -0.0035 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.5434 L22: 2.1190 REMARK 3 L33: 1.8572 L12: 0.6269 REMARK 3 L13: -0.2681 L23: 0.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: -0.0046 S13: 0.2253 REMARK 3 S21: 0.0423 S22: 0.0607 S23: 0.3932 REMARK 3 S31: 0.0104 S32: -0.2450 S33: -0.1601 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7319 37.2494 9.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1320 REMARK 3 T33: 0.2183 T12: -0.0334 REMARK 3 T13: 0.0115 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.0408 L22: 2.8229 REMARK 3 L33: 3.3345 L12: 0.1380 REMARK 3 L13: -1.8093 L23: -0.0318 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: -0.0453 S13: 0.3465 REMARK 3 S21: 0.0864 S22: 0.0931 S23: 0.1873 REMARK 3 S31: -0.2533 S32: 0.0736 S33: -0.1205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3836 31.7075 -1.9866 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.2052 REMARK 3 T33: 0.1592 T12: -0.0257 REMARK 3 T13: 0.0425 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.3631 L22: 2.3658 REMARK 3 L33: 3.0053 L12: 0.1370 REMARK 3 L13: 0.7590 L23: 1.1800 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.4849 S13: 0.0997 REMARK 3 S21: -0.2850 S22: 0.0339 S23: -0.1814 REMARK 3 S31: -0.0664 S32: 0.2080 S33: -0.0182 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4924 20.7919 10.9157 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1745 REMARK 3 T33: 0.1744 T12: -0.0034 REMARK 3 T13: 0.0016 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.1572 L22: 2.5683 REMARK 3 L33: 2.1677 L12: -0.2237 REMARK 3 L13: 0.5163 L23: -2.3421 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.1720 S13: -0.0732 REMARK 3 S21: -0.0063 S22: 0.1228 S23: 0.0384 REMARK 3 S31: 0.1549 S32: 0.1705 S33: -0.0508 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC. REMARK 100 THE DEPOSITION ID IS D_1300037850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CAMD REMARK 200 BEAMLINE : GCPCC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 41.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM CALCIUM ACETATE,100MM MES(PH 5.5 REMARK 280 -6.5),PEG 8000 16%-24%, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.27467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.63733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.95600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.31867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.59333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.27467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.63733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.31867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.95600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.59333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 LYS A 5 NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 GLN A 70 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 394 O HOH A 409 1.89 REMARK 500 O HOH A 413 O HOH A 427 1.92 REMARK 500 NH1 ARG A 164 O HOH A 301 2.00 REMARK 500 O HOH A 332 O HOH A 417 2.03 REMARK 500 OE1 GLN A 129 O HOH A 302 2.04 REMARK 500 OD1 ASP A 12 CBE DNU A 203 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -152.86 -155.97 REMARK 500 SER A 122 59.55 -95.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O3B 88.5 REMARK 620 3 HOH A 308 O 89.1 85.4 REMARK 620 4 HOH A 320 O 80.7 92.1 169.5 REMARK 620 5 HOH A 345 O 88.9 173.2 88.3 93.7 REMARK 620 N 1 2 3 4 DBREF 8JHL A 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 8JHL ASP A 12 UNP P01116 GLY 12 VARIANT SEQRES 1 A 169 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP GLY SEQRES 2 A 169 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 169 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 169 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 169 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 169 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 169 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 169 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 169 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 169 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 169 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 169 THR SER ALA LYS THR ARG GLN ARG VAL GLU ASP ALA PHE SEQRES 13 A 169 TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG LEU LYS HET GDP A 201 28 HET MG A 202 1 HET DNU A 203 46 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DNU 1-[4-[7-(8-ETHYNYL-7-FLUORANYL-NAPHTHALEN-1-YL)-8- HETNAM 2 DNU FLUORANYL-2-[[(2~{R},8~{S})-2-FLUORANYL-1,2,3,5,6,7- HETNAM 3 DNU HEXAHYDROPYRROLIZIN-8-YL]METHOXY]PYRIDO[4,3- HETNAM 4 DNU D]PYRIMIDIN-4-YL]PIPERAZIN-1-YL]-3-OXIDANYL-PROPAN-1- HETNAM 5 DNU ONE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 DNU C34 H33 F3 N6 O3 FORMUL 5 HOH *130(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 ARG A 151 LYS A 169 1 19 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OD1 ASP A 12 CBG DNU A 203 1555 1555 1.44 LINK OG SER A 17 MG MG A 202 1555 1555 2.15 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.19 LINK MG MG A 202 O HOH A 308 1555 1555 2.40 LINK MG MG A 202 O HOH A 320 1555 1555 2.36 LINK MG MG A 202 O HOH A 345 1555 1555 2.27 CRYST1 82.353 82.353 97.912 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012143 0.007011 0.000000 0.00000 SCALE2 0.000000 0.014021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010213 0.00000