HEADER HYDROLASE 31-MAY-23 8JK3 TITLE CRYSTAL STRUCTURE OF BEL-1 EXTENDED SPECTRUM BETA-LACTAMASE IN TITLE 2 HEXAGONAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLA(BEL1), BLABEL-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, APO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.DHANKHAR,S.HAZRA REVDAT 1 05-JUN-24 8JK3 0 JRNL AUTH K.DHANKHAR,S.HAZRA JRNL TITL CRYSTAL STRUCTURE OF BEL-1 ESBL IN HEXAGONAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.176 REMARK 3 FREE R VALUE TEST SET COUNT : 4975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 375 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 608 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04800 REMARK 3 B22 (A**2) : -0.04800 REMARK 3 B33 (A**2) : 0.15600 REMARK 3 B12 (A**2) : -0.02400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4192 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4037 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5676 ; 2.009 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9280 ; 0.675 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 9.008 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;13.635 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4972 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 944 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 972 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 37 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2131 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.227 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.454 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 2.018 ; 2.003 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2151 ; 2.003 ; 2.002 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2694 ; 2.526 ; 3.599 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2695 ; 2.532 ; 3.600 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 2.702 ; 2.390 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2041 ; 2.702 ; 2.391 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2982 ; 3.476 ; 4.214 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2983 ; 3.476 ; 4.215 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8229 ; 5.930 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8JK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300037976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : X RAY OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.126 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M HEPES SODIUM PH 7.5, 30% V/V 2-PROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.08533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.04267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.06400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.02133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 264 REMARK 465 HIS A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -1 CG CD OE1 NE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 GLN A 259 CG CD OE1 NE2 REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 103 HZ3 LYS B 207 1.14 REMARK 500 HG SER A 103 HZ3 LYS A 207 1.16 REMARK 500 HB3 LYS B 255 O HOH B 615 1.50 REMARK 500 HZ1 LYS B 229 O HOH B 406 1.57 REMARK 500 O HOH B 619 O HOH B 685 2.04 REMARK 500 O HOH B 408 O HOH B 605 2.04 REMARK 500 O HOH A 455 O HOH A 677 2.05 REMARK 500 OE1 GLU B 64 O HOH B 401 2.08 REMARK 500 O HOH A 651 O HOH A 672 2.18 REMARK 500 OD1 ASP B 1 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 605 O HOH B 660 6554 2.08 REMARK 500 O HOH B 518 O HOH B 615 5555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 233 CA SER A 233 CB 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 41 CB - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 260 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 CYS B 41 CB - CA - C ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG B 83 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 195 CG - CD - NE ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG B 195 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 195 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 HIS B 265 CA - C - O ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 -143.57 51.69 REMARK 500 ALA A 78 60.34 -157.66 REMARK 500 VAL A 132 -51.80 -120.44 REMARK 500 ASP A 136 -32.97 -133.90 REMARK 500 THR A 193 -122.53 -104.95 REMARK 500 CYS B 41 -144.50 48.96 REMARK 500 ALA B 78 65.32 -154.09 REMARK 500 THR B 193 -128.53 -103.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 126 0.09 SIDE CHAIN REMARK 500 ARG A 181 0.12 SIDE CHAIN REMARK 500 ARG B 37 0.11 SIDE CHAIN REMARK 500 ARG B 181 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 701 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 567 O REMARK 620 2 HOH B 655 O 111.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 667 O REMARK 620 2 HOH B 688 O 100.9 REMARK 620 N 1 DBREF 8JK3 A -1 263 UNP Q3SAW3 Q3SAW3_PSEAI 19 283 DBREF 8JK3 B -1 263 UNP Q3SAW3 Q3SAW3_PSEAI 19 283 SEQADV 8JK3 ALA A 264 UNP Q3SAW3 EXPRESSION TAG SEQADV 8JK3 HIS A 265 UNP Q3SAW3 EXPRESSION TAG SEQADV 8JK3 ALA B 264 UNP Q3SAW3 EXPRESSION TAG SEQADV 8JK3 HIS B 265 UNP Q3SAW3 EXPRESSION TAG SEQRES 1 A 267 GLN ALA ASP PHE GLU HIS ALA ILE SER ASP LEU GLU ALA SEQRES 2 A 267 HIS ASN GLN ALA LYS ILE GLY VAL ALA LEU VAL SER GLU SEQRES 3 A 267 ASN GLY ASN LEU ILE GLN GLY TYR ARG ALA ASN GLU ARG SEQRES 4 A 267 PHE ALA MET CYS SER THR PHE LYS LEU PRO LEU ALA ALA SEQRES 5 A 267 LEU VAL LEU SER ARG ILE ASP ALA GLY GLU GLU ASN PRO SEQRES 6 A 267 GLU ARG LYS LEU HIS TYR ASP SER ALA PHE LEU GLU GLU SEQRES 7 A 267 TYR ALA PRO ALA ALA LYS ARG TYR VAL ALA THR GLY TYR SEQRES 8 A 267 MET THR VAL THR GLU ALA ILE GLN SER ALA LEU GLN LEU SEQRES 9 A 267 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU VAL SEQRES 10 A 267 GLY GLY PRO PRO LEU LEU THR LYS TYR PHE ARG SER LEU SEQRES 11 A 267 GLY ASP LYS VAL SER ARG LEU ASP ARG ILE GLU PRO THR SEQRES 12 A 267 LEU ASN THR ASN THR PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 A 267 THR PRO MET SER MET ALA GLN THR VAL SER LYS LEU ILE SEQRES 14 A 267 PHE GLY ASP THR LEU THR TYR LYS SER LYS GLY GLN LEU SEQRES 15 A 267 ARG ARG LEU LEU ILE GLY ASN GLN THR GLY ASP LYS THR SEQRES 16 A 267 ILE ARG ALA GLY LEU PRO ASP SER TRP VAL THR GLY ASP SEQRES 17 A 267 LYS THR GLY SER CYS ALA ASN GLY GLY ARG ASN ASP VAL SEQRES 18 A 267 ALA PHE PHE ILE THR THR ALA GLY LYS LYS TYR VAL LEU SEQRES 19 A 267 SER VAL TYR THR ASN ALA PRO GLU LEU GLN GLY GLU GLU SEQRES 20 A 267 ARG ALA LEU LEU ILE ALA SER VAL ALA LYS LEU ALA ARG SEQRES 21 A 267 GLN TYR VAL VAL HIS ALA HIS SEQRES 1 B 267 GLN ALA ASP PHE GLU HIS ALA ILE SER ASP LEU GLU ALA SEQRES 2 B 267 HIS ASN GLN ALA LYS ILE GLY VAL ALA LEU VAL SER GLU SEQRES 3 B 267 ASN GLY ASN LEU ILE GLN GLY TYR ARG ALA ASN GLU ARG SEQRES 4 B 267 PHE ALA MET CYS SER THR PHE LYS LEU PRO LEU ALA ALA SEQRES 5 B 267 LEU VAL LEU SER ARG ILE ASP ALA GLY GLU GLU ASN PRO SEQRES 6 B 267 GLU ARG LYS LEU HIS TYR ASP SER ALA PHE LEU GLU GLU SEQRES 7 B 267 TYR ALA PRO ALA ALA LYS ARG TYR VAL ALA THR GLY TYR SEQRES 8 B 267 MET THR VAL THR GLU ALA ILE GLN SER ALA LEU GLN LEU SEQRES 9 B 267 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU VAL SEQRES 10 B 267 GLY GLY PRO PRO LEU LEU THR LYS TYR PHE ARG SER LEU SEQRES 11 B 267 GLY ASP LYS VAL SER ARG LEU ASP ARG ILE GLU PRO THR SEQRES 12 B 267 LEU ASN THR ASN THR PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 B 267 THR PRO MET SER MET ALA GLN THR VAL SER LYS LEU ILE SEQRES 14 B 267 PHE GLY ASP THR LEU THR TYR LYS SER LYS GLY GLN LEU SEQRES 15 B 267 ARG ARG LEU LEU ILE GLY ASN GLN THR GLY ASP LYS THR SEQRES 16 B 267 ILE ARG ALA GLY LEU PRO ASP SER TRP VAL THR GLY ASP SEQRES 17 B 267 LYS THR GLY SER CYS ALA ASN GLY GLY ARG ASN ASP VAL SEQRES 18 B 267 ALA PHE PHE ILE THR THR ALA GLY LYS LYS TYR VAL LEU SEQRES 19 B 267 SER VAL TYR THR ASN ALA PRO GLU LEU GLN GLY GLU GLU SEQRES 20 B 267 ARG ALA LEU LEU ILE ALA SER VAL ALA LYS LEU ALA ARG SEQRES 21 B 267 GLN TYR VAL VAL HIS ALA HIS HET EDO A 301 10 HET PGE A 302 24 HET EDO A 303 10 HET EDO A 304 10 HET IPA A 305 12 HET ACT A 306 7 HET CL A 307 1 HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HET MG B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM IPA ISOPROPYL ALCOHOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 PGE C6 H14 O4 FORMUL 7 IPA C3 H8 O FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 CL 4(CL 1-) FORMUL 10 MG 4(MG 2+) FORMUL 17 HOH *608(H2 O) HELIX 1 AA1 GLN A -1 GLN A 14 1 16 HELIX 2 AA2 CYS A 41 THR A 43 5 3 HELIX 3 AA3 PHE A 44 ALA A 58 1 15 HELIX 4 AA4 ASP A 70 LEU A 74 5 5 HELIX 5 AA5 ALA A 78 VAL A 85 1 8 HELIX 6 AA6 VAL A 92 LEU A 102 1 11 HELIX 7 AA7 ASP A 104 VAL A 115 1 12 HELIX 8 AA8 GLY A 117 LEU A 128 1 12 HELIX 9 AA9 PRO A 140 THR A 144 5 5 HELIX 10 AB1 THR A 155 GLY A 169 1 15 HELIX 11 AB2 THR A 173 GLY A 186 1 14 HELIX 12 AB3 THR A 193 LEU A 198 5 6 HELIX 13 AB4 GLN A 242 HIS A 263 1 22 HELIX 14 AB5 ALA B 0 GLN B 14 1 15 HELIX 15 AB6 CYS B 41 THR B 43 5 3 HELIX 16 AB7 PHE B 44 ALA B 58 1 15 HELIX 17 AB8 ASP B 70 LEU B 74 5 5 HELIX 18 AB9 ALA B 78 VAL B 85 1 8 HELIX 19 AC1 VAL B 92 LEU B 102 1 11 HELIX 20 AC2 ASP B 104 VAL B 115 1 12 HELIX 21 AC3 GLY B 117 LEU B 128 1 12 HELIX 22 AC4 PRO B 140 THR B 144 5 5 HELIX 23 AC5 THR B 155 GLY B 169 1 15 HELIX 24 AC6 THR B 173 GLY B 186 1 14 HELIX 25 AC7 THR B 193 LEU B 198 5 6 HELIX 26 AC8 GLN B 242 HIS B 265 1 24 SHEET 1 AA1 5 LEU A 28 TYR A 32 0 SHEET 2 AA1 5 LYS A 16 SER A 23 -1 N LEU A 21 O ILE A 29 SHEET 3 AA1 5 LYS A 229 ASN A 237 -1 O TYR A 235 N GLY A 18 SHEET 4 AA1 5 GLY A 215 ILE A 223 -1 N ASP A 218 O VAL A 234 SHEET 5 AA1 5 VAL A 203 CYS A 211 -1 N GLY A 209 O ASN A 217 SHEET 1 AA2 2 PHE A 38 ALA A 39 0 SHEET 2 AA2 2 THR A 153 THR A 154 -1 O THR A 154 N PHE A 38 SHEET 1 AA3 2 LYS A 66 HIS A 68 0 SHEET 2 AA3 2 TYR A 89 THR A 91 -1 O MET A 90 N LEU A 67 SHEET 1 AA4 5 LEU B 28 TYR B 32 0 SHEET 2 AA4 5 LYS B 16 SER B 23 -1 N LEU B 21 O ILE B 29 SHEET 3 AA4 5 LYS B 229 ASN B 237 -1 O TYR B 235 N GLY B 18 SHEET 4 AA4 5 GLY B 215 ILE B 223 -1 N ASP B 218 O VAL B 234 SHEET 5 AA4 5 VAL B 203 CYS B 211 -1 N CYS B 211 O GLY B 215 SHEET 1 AA5 2 PHE B 38 ALA B 39 0 SHEET 2 AA5 2 THR B 153 THR B 154 -1 O THR B 154 N PHE B 38 SHEET 1 AA6 2 LYS B 66 HIS B 68 0 SHEET 2 AA6 2 TYR B 89 THR B 91 -1 O MET B 90 N LEU B 67 SSBOND 1 CYS A 41 CYS A 211 1555 1555 1.93 SSBOND 2 CYS B 41 CYS B 211 1555 1555 1.91 LINK OG SER B 103 MG MG B 304 1555 1555 2.82 LINK MG MG B 301 O HOH B 567 1555 1555 2.82 LINK MG MG B 301 O HOH B 655 1555 1555 2.52 LINK MG MG B 303 O HOH B 667 1555 1555 1.99 LINK MG MG B 303 O HOH B 688 1555 1555 2.96 CISPEP 1 GLU A 139 PRO A 140 0 -0.41 CISPEP 2 GLU B 139 PRO B 140 0 -0.95 CRYST1 121.192 121.192 72.128 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008251 0.004764 0.000000 0.00000 SCALE2 0.000000 0.009528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013864 0.00000