HEADER DNA BINDING PROTEIN/DNA 01-JUN-23 8JKK TITLE CRYSTAL STRUCTURE OF THE DIOXYGENASE CCTET FROM COPRINOPSIS CINEREA TITLE 2 BOUND TO 12BP 5-METHYLCYTOSINE (5MC) CONTAINING DUPLEX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2OGFEDO JBP1/TET OXYGENASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, D, G, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3'); COMPND 7 CHAIN: B, E, H, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3'); COMPND 11 CHAIN: C, F, I, L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPRINOPSIS CINEREA (STRAIN OKAYAMA-7 / 130 / SOURCE 3 ATCC MYA-4618 / FGSC 9003); SOURCE 4 ORGANISM_COMMON: HORMOGRAPHIELLA ASPERGILLATA; SOURCE 5 ORGANISM_TAXID: 240176; SOURCE 6 GENE: CC1G_05589; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS DNA DEMETHYLASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHANG,L.ZHANG REVDAT 2 08-MAY-24 8JKK 1 JRNL REVDAT 1 06-MAR-24 8JKK 0 JRNL AUTH L.ZHANG,Y.MU,T.LI,J.HU,H.LIN,L.ZHANG JRNL TITL MOLECULAR BASIS OF AN ATYPICAL DSDNA 5MC/6MA BIFUNCTIONAL JRNL TITL 2 DIOXYGENASE CCTET FROM COPRINOPSIS CINEREA IN CATALYZING JRNL TITL 3 DSDNA 5MC DEMETHYLATION. JRNL REF NUCLEIC ACIDS RES. V. 52 3886 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38324471 JRNL DOI 10.1093/NAR/GKAE066 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 94917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.9800 - 7.0700 0.98 3509 173 0.1600 0.1565 REMARK 3 2 7.0700 - 5.6400 1.00 3457 166 0.1792 0.1813 REMARK 3 3 5.6400 - 4.9400 1.00 3398 164 0.1699 0.2143 REMARK 3 4 4.9400 - 4.4900 1.00 3376 172 0.1462 0.1742 REMARK 3 5 4.4900 - 4.1700 1.00 3325 199 0.1470 0.1607 REMARK 3 6 4.1700 - 3.9300 0.98 3262 190 0.1586 0.1952 REMARK 3 7 3.9300 - 3.7300 0.99 3315 173 0.1679 0.1717 REMARK 3 8 3.7300 - 3.5700 0.99 3278 183 0.1933 0.2390 REMARK 3 9 3.5700 - 3.4300 1.00 3302 176 0.1807 0.2130 REMARK 3 10 3.4300 - 3.3100 1.00 3317 177 0.1877 0.2264 REMARK 3 11 3.3100 - 3.2100 1.00 3287 167 0.1949 0.2116 REMARK 3 12 3.2100 - 3.1200 1.00 3343 151 0.1989 0.2311 REMARK 3 13 3.1200 - 3.0400 1.00 3306 183 0.2094 0.2375 REMARK 3 14 3.0400 - 2.9600 1.00 3291 170 0.2123 0.2714 REMARK 3 15 2.9600 - 2.9000 1.00 3301 164 0.2127 0.2583 REMARK 3 16 2.9000 - 2.8400 1.00 3290 174 0.2146 0.2360 REMARK 3 17 2.8400 - 2.7800 0.94 3115 172 0.2108 0.2315 REMARK 3 18 2.7800 - 2.7300 0.94 3114 147 0.2204 0.3081 REMARK 3 19 2.7300 - 2.6800 0.94 3103 156 0.2260 0.2627 REMARK 3 20 2.6800 - 2.6300 0.90 2977 133 0.2236 0.2954 REMARK 3 21 2.6300 - 2.5900 0.87 2847 196 0.2305 0.2634 REMARK 3 22 2.5900 - 2.5500 0.84 2718 140 0.2305 0.2726 REMARK 3 23 2.5500 - 2.5100 0.81 2689 165 0.2189 0.2523 REMARK 3 24 2.5100 - 2.4800 0.78 2536 136 0.2255 0.2762 REMARK 3 25 2.4800 - 2.4400 0.76 2540 125 0.2177 0.2299 REMARK 3 26 2.4400 - 2.4100 0.74 2394 125 0.2113 0.2662 REMARK 3 27 2.4100 - 2.3800 0.70 2327 136 0.2186 0.2984 REMARK 3 28 2.3800 - 2.3500 0.69 2264 132 0.2256 0.2552 REMARK 3 29 2.3500 - 2.3300 0.66 2169 110 0.2264 0.3035 REMARK 3 30 2.3300 - 2.3000 0.61 2001 111 0.2365 0.2716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 14434 REMARK 3 ANGLE : 1.628 20013 REMARK 3 CHIRALITY : 0.159 2208 REMARK 3 PLANARITY : 0.010 2255 REMARK 3 DIHEDRAL : 26.204 5457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -64.9102 -29.8562 -52.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1420 REMARK 3 T33: 0.2150 T12: 0.0343 REMARK 3 T13: -0.0023 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.2094 L22: 0.0104 REMARK 3 L33: 0.3396 L12: -0.0015 REMARK 3 L13: -0.0039 L23: 0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0631 S13: 0.0073 REMARK 3 S21: -0.0452 S22: -0.0338 S23: 0.0239 REMARK 3 S31: -0.0448 S32: -0.0004 S33: 0.0295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8JKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9875 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 20% PEG 6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.28450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.11800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.81550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.11800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.28450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.81550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 CYS A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 ASP A 14 REMARK 465 GLU A 15 REMARK 465 THR A 16 REMARK 465 ALA A 179 REMARK 465 ARG A 180 REMARK 465 VAL A 181 REMARK 465 GLU A 182 REMARK 465 MET A 183 REMARK 465 GLN A 184 REMARK 465 LYS A 185 REMARK 465 VAL A 186 REMARK 465 LYS A 187 REMARK 465 GLY A 188 REMARK 465 LYS A 189 REMARK 465 GLY A 190 REMARK 465 LYS A 191 REMARK 465 GLN A 192 REMARK 465 GLU A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 GLY A 196 REMARK 465 GLN A 197 REMARK 465 GLU A 198 REMARK 465 LYS A 199 REMARK 465 LEU A 200 REMARK 465 GLY A 201 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 ILE D 4 REMARK 465 PRO D 5 REMARK 465 PHE D 6 REMARK 465 SER D 7 REMARK 465 THR D 8 REMARK 465 ASP D 9 REMARK 465 ASP D 10 REMARK 465 CYS D 11 REMARK 465 SER D 12 REMARK 465 GLN D 13 REMARK 465 ASP D 14 REMARK 465 GLU D 15 REMARK 465 THR D 16 REMARK 465 LYS D 187 REMARK 465 GLY D 188 REMARK 465 LYS D 189 REMARK 465 GLY D 190 REMARK 465 LYS D 191 REMARK 465 GLN D 192 REMARK 465 GLU D 193 REMARK 465 GLU D 194 REMARK 465 GLU D 195 REMARK 465 GLY D 196 REMARK 465 GLN D 197 REMARK 465 GLU D 198 REMARK 465 LYS D 199 REMARK 465 SER D 413 REMARK 465 TYR D 414 REMARK 465 THR D 415 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 ALA G 3 REMARK 465 ILE G 4 REMARK 465 PRO G 5 REMARK 465 PHE G 6 REMARK 465 SER G 7 REMARK 465 THR G 8 REMARK 465 ASP G 9 REMARK 465 ASP G 10 REMARK 465 CYS G 11 REMARK 465 SER G 12 REMARK 465 GLN G 13 REMARK 465 ASP G 14 REMARK 465 GLU G 15 REMARK 465 THR G 16 REMARK 465 GLU G 177 REMARK 465 ARG G 178 REMARK 465 ALA G 179 REMARK 465 ARG G 180 REMARK 465 VAL G 181 REMARK 465 GLU G 182 REMARK 465 MET G 183 REMARK 465 GLN G 184 REMARK 465 LYS G 185 REMARK 465 VAL G 186 REMARK 465 LYS G 187 REMARK 465 GLY G 188 REMARK 465 LYS G 189 REMARK 465 GLY G 190 REMARK 465 LYS G 191 REMARK 465 GLN G 192 REMARK 465 GLU G 193 REMARK 465 GLU G 194 REMARK 465 GLU G 195 REMARK 465 GLY G 196 REMARK 465 GLN G 197 REMARK 465 GLU G 198 REMARK 465 LYS G 199 REMARK 465 MET J 1 REMARK 465 SER J 2 REMARK 465 ALA J 3 REMARK 465 ILE J 4 REMARK 465 PRO J 5 REMARK 465 PHE J 6 REMARK 465 SER J 7 REMARK 465 THR J 8 REMARK 465 ASP J 9 REMARK 465 ASP J 10 REMARK 465 CYS J 11 REMARK 465 SER J 12 REMARK 465 GLN J 13 REMARK 465 ASP J 14 REMARK 465 GLU J 15 REMARK 465 THR J 16 REMARK 465 GLN J 184 REMARK 465 LYS J 185 REMARK 465 VAL J 186 REMARK 465 LYS J 187 REMARK 465 GLY J 188 REMARK 465 LYS J 189 REMARK 465 GLY J 190 REMARK 465 LYS J 191 REMARK 465 GLN J 192 REMARK 465 GLU J 193 REMARK 465 GLU J 194 REMARK 465 GLU J 195 REMARK 465 GLY J 196 REMARK 465 GLN J 197 REMARK 465 GLU J 198 REMARK 465 LYS J 199 REMARK 465 DC L 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 259 C ILE A 259 O -0.130 REMARK 500 DT C 7 O3' DT C 7 C3' -0.041 REMARK 500 ALA D 154 C ALA D 154 O -0.122 REMARK 500 ARG D 180 C ARG D 180 O -0.115 REMARK 500 GLU D 182 CD GLU D 182 OE1 -0.080 REMARK 500 GLU D 182 CD GLU D 182 OE2 -0.092 REMARK 500 ALA D 215 C ALA D 215 O -0.115 REMARK 500 TRP D 230 C TRP D 230 O -0.117 REMARK 500 PRO D 231 C PRO D 231 O -0.130 REMARK 500 HIS D 234 CE1 HIS D 234 NE2 -0.101 REMARK 500 GLU D 235 CD GLU D 235 OE1 -0.079 REMARK 500 GLU D 235 CD GLU D 235 OE2 -0.087 REMARK 500 GLY D 240 C GLY D 240 O -0.100 REMARK 500 PRO D 241 C PRO D 241 O -0.124 REMARK 500 PRO D 247 C PRO D 247 O -0.164 REMARK 500 GLU D 251 CD GLU D 251 OE1 -0.104 REMARK 500 GLU D 251 CD GLU D 251 OE2 -0.095 REMARK 500 ASP D 258 C ASP D 258 O -0.122 REMARK 500 PRO D 260 C PRO D 260 O -0.151 REMARK 500 GLU D 412 CD GLU D 412 OE1 -0.072 REMARK 500 GLU D 412 CD GLU D 412 OE2 -0.069 REMARK 500 DC E 1 P DC E 1 O5' 0.061 REMARK 500 DC E 1 O3' DC E 1 C3' -0.039 REMARK 500 DC E 5 P DC E 5 OP1 -0.141 REMARK 500 DC E 5 P DC E 5 OP2 -0.203 REMARK 500 5CM E 6 O3' DG E 7 P -0.108 REMARK 500 DA E 10 O3' DC E 11 P -0.083 REMARK 500 DG F 2 O3' DG F 2 C3' -0.039 REMARK 500 LYS G 246 C PRO G 247 N 0.136 REMARK 500 ARG G 395 CZ ARG G 395 NH1 0.114 REMARK 500 DG I 2 O3' DG I 2 C3' -0.051 REMARK 500 DT I 3 O3' DT I 3 C3' -0.038 REMARK 500 DG I 12 P DG I 12 OP1 -0.114 REMARK 500 DG I 12 P DG I 12 OP2 -0.124 REMARK 500 LEU J 238 C PRO J 239 N 0.143 REMARK 500 LYS J 246 C PRO J 247 N 0.145 REMARK 500 PRO J 248 N PRO J 248 CA 0.195 REMARK 500 PRO J 260 C PRO J 260 O -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 DG B 2 O3' - P - OP2 ANGL. DEV. = -19.4 DEGREES REMARK 500 DG B 2 O3' - P - OP1 ANGL. DEV. = -24.2 DEGREES REMARK 500 DG B 2 OP1 - P - OP2 ANGL. DEV. = 11.4 DEGREES REMARK 500 DG B 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 ASN D 203 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 DC E 1 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DC E 1 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC E 5 O5' - P - OP2 ANGL. DEV. = -8.4 DEGREES REMARK 500 DA E 10 C4' - C3' - O3' ANGL. DEV. = -17.0 DEGREES REMARK 500 DT F 3 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 11 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LYS G 106 CG - CD - CE ANGL. DEV. = -22.4 DEGREES REMARK 500 LYS G 106 CD - CE - NZ ANGL. DEV. = 35.9 DEGREES REMARK 500 DC H 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC H 11 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT I 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT I 10 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DC I 11 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 ARG J 32 CA - CB - CG ANGL. DEV. = 23.1 DEGREES REMARK 500 ARG J 32 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 GLU J 47 CG - CD - OE2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG J 87 CB - CG - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG J 87 CG - CD - NE ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG J 87 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG J 92 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG J 92 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LYS J 163 CD - CE - NZ ANGL. DEV. = -21.4 DEGREES REMARK 500 ASN J 203 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO J 239 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO J 239 C - N - CD ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO J 247 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO J 248 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 PRO J 248 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 LYS J 293 CD - CE - NZ ANGL. DEV. = 18.4 DEGREES REMARK 500 DG K 2 O3' - P - OP2 ANGL. DEV. = -20.6 DEGREES REMARK 500 DG K 2 O3' - P - OP1 ANGL. DEV. = -23.7 DEGREES REMARK 500 DG K 2 OP1 - P - OP2 ANGL. DEV. = 12.6 DEGREES REMARK 500 DC K 11 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DG K 12 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT L 3 C2' - C3' - O3' ANGL. DEV. = -16.3 DEGREES REMARK 500 DT L 3 C3' - C2' - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -168.22 -121.66 REMARK 500 SER A 116 127.76 -176.98 REMARK 500 HIS A 118 76.24 55.95 REMARK 500 ASN A 236 56.74 -90.84 REMARK 500 PHE A 309 54.70 -91.92 REMARK 500 SER A 346 -2.11 -141.35 REMARK 500 SER D 116 131.17 -178.30 REMARK 500 HIS D 118 77.12 55.63 REMARK 500 PHE D 309 53.67 -90.70 REMARK 500 SER D 346 -0.38 -141.51 REMARK 500 ASP G 49 -168.46 -123.30 REMARK 500 SER G 116 130.68 -177.31 REMARK 500 HIS G 118 77.06 54.42 REMARK 500 PHE G 309 53.80 -90.83 REMARK 500 SER G 346 -0.15 -142.79 REMARK 500 ASP J 49 -164.96 -120.90 REMARK 500 SER J 116 133.06 -175.93 REMARK 500 HIS J 118 78.43 51.94 REMARK 500 PHE J 309 53.24 -90.00 REMARK 500 SER J 346 -3.20 -141.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 894 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 895 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 896 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 897 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH A 898 DISTANCE = 9.50 ANGSTROMS REMARK 525 HOH D 874 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D 875 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH G 788 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 326 NE2 REMARK 620 2 ASP A 328 OD1 74.3 REMARK 620 3 ASP A 328 OD2 97.7 51.2 REMARK 620 4 HIS A 376 NE2 83.5 123.2 82.2 REMARK 620 5 OGA A 502 O2' 104.0 155.0 150.5 80.7 REMARK 620 6 OGA A 502 O1 96.2 78.3 120.4 157.0 77.1 REMARK 620 7 HOH A 655 O 170.4 103.9 74.5 89.9 81.6 92.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 326 NE2 REMARK 620 2 ASP D 328 OD1 75.9 REMARK 620 3 ASP D 328 OD2 103.4 52.1 REMARK 620 4 HIS D 376 NE2 87.2 126.9 85.4 REMARK 620 5 OGA D 502 O2 87.9 79.9 124.3 150.3 REMARK 620 6 OGA D 502 O2' 95.8 152.8 153.6 77.5 73.9 REMARK 620 7 HOH D 686 O 173.3 101.7 79.4 99.2 85.5 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 326 NE2 REMARK 620 2 ASP G 328 OD2 98.6 REMARK 620 3 HIS G 376 NE2 84.3 89.8 REMARK 620 4 OGA G 502 O1 96.1 118.3 151.4 REMARK 620 5 OGA G 502 O2' 99.6 157.0 78.2 73.5 REMARK 620 6 HOH G 658 O 167.4 80.8 83.1 95.2 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN J 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS J 326 NE2 REMARK 620 2 ASP J 328 OD2 100.1 REMARK 620 3 HIS J 376 NE2 84.5 85.8 REMARK 620 4 OGA J 502 O2 89.4 114.3 159.7 REMARK 620 5 OGA J 502 O2' 101.7 156.0 86.6 75.8 REMARK 620 6 HOH J 633 O 176.4 81.9 92.7 92.5 75.8 REMARK 620 N 1 2 3 4 5 DBREF 8JKK A 1 415 UNP A8P1J0 A8P1J0_COPC7 1 415 DBREF 8JKK B 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK C 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK D 1 415 UNP A8P1J0 A8P1J0_COPC7 1 415 DBREF 8JKK E 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK F 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK G 1 415 UNP A8P1J0 A8P1J0_COPC7 1 415 DBREF 8JKK H 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK I 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK J 1 415 UNP A8P1J0 A8P1J0_COPC7 1 415 DBREF 8JKK K 1 12 PDB 8JKK 8JKK 1 12 DBREF 8JKK L 1 12 PDB 8JKK 8JKK 1 12 SEQRES 1 A 415 MET SER ALA ILE PRO PHE SER THR ASP ASP CYS SER GLN SEQRES 2 A 415 ASP GLU THR LEU PRO SER LEU LEU LEU ILE ASP GLU ALA SEQRES 3 A 415 ALA ALA VAL LEU GLY ARG MET ILE GLN GLY LEU ARG THR SEQRES 4 A 415 GLY ILE PRO TYR ILE HIS THR GLU ASN ASP SER ILE LYS SEQRES 5 A 415 ALA ASN PRO ILE LEU ARG THR ALA LEU TRP GLN ALA ALA SEQRES 6 A 415 TYR VAL LEU GLU LYS ALA TYR ARG ARG ARG TYR ARG VAL SEQRES 7 A 415 PRO TRP THR ALA ARG ARG TYR MET ARG GLU LEU THR PRO SEQRES 8 A 415 ARG GLN ASP GLY ARG ASN ALA ASN ARG GLU ALA VAL MET SEQRES 9 A 415 ALA LYS GLU PHE PRO PRO GLY ALA GLU LEU ASN SER ASP SEQRES 10 A 415 HIS PRO VAL GLN GLU ILE LEU PRO ALA MET ILE ILE ASP SEQRES 11 A 415 ALA GLU ASP HIS ILE LEU PHE CYS TYR LEU PRO SER CYS SEQRES 12 A 415 VAL SER PRO ALA ILE MET THR ILE ILE ASP ALA ALA VAL SEQRES 13 A 415 GLY THR LEU ALA THR THR LYS ASP GLY HIS LEU GLN LYS SEQRES 14 A 415 LYS SER ARG ALA ARG GLU GLY GLU ARG ALA ARG VAL GLU SEQRES 15 A 415 MET GLN LYS VAL LYS GLY LYS GLY LYS GLN GLU GLU GLU SEQRES 16 A 415 GLY GLN GLU LYS LEU GLY ALA ASN TRP ARG GLU ALA LEU SEQRES 17 A 415 ASP LEU PHE ARG GLN GLY ALA CYS LYS MET THR PRO GLY SEQRES 18 A 415 VAL LEU THR PHE ALA PRO ALA TRP TRP PRO VAL GLY HIS SEQRES 19 A 415 GLU ASN GLN LEU PRO GLY PRO ALA SER THR LEU LYS PRO SEQRES 20 A 415 PRO LYS GLY GLU GLY ARG MET PHE LEU SER ASP ILE PRO SEQRES 21 A 415 ILE ALA SER ALA LEU VAL GLY ALA ILE LEU ALA GLN ILE SEQRES 22 A 415 ASN GLN PRO LEU PHE GLU SER GLY VAL LYS VAL LEU ARG SEQRES 23 A 415 GLU LEU TYR SER ASN SER LYS LEU THR LYS ASP HIS SER SEQRES 24 A 415 THR VAL SER LYS ILE ILE GLU ILE TRP PHE SER PRO PHE SEQRES 25 A 415 SER SER LEU SER LEU ILE VAL ASN ARG ALA THR PRO ILE SEQRES 26 A 415 HIS ARG ASP THR SER GLY PRO ILE GLU GLY MET ASP ILE SEQRES 27 A 415 LEU VAL THR GLY GLY ASN TYR SER ASN GLY VAL LEU VAL SEQRES 28 A 415 THR PRO SER PHE ASN ARG ARG TRP THR TYR ASN PRO GLY SEQRES 29 A 415 CYS VAL VAL ALA LEU LEU GLY LYS LEU VAL LEU HIS GLY SEQRES 30 A 415 VAL PRO GLU VAL ASP GLY GLU ARG TYR CYS MET ALA HIS SEQRES 31 A 415 PHE TRP ARG GLU ARG LEU PHE ASP ALA ALA GLY VAL PRO SEQRES 32 A 415 PHE PRO TYR PRO SER LYS TRP GLN GLU SER TYR THR SEQRES 1 B 12 DC DG DA DT DC 5CM DG DC DT DA DC DG SEQRES 1 C 12 DC DG DT DA DG DC DT DG DA DT DC DG SEQRES 1 D 415 MET SER ALA ILE PRO PHE SER THR ASP ASP CYS SER GLN SEQRES 2 D 415 ASP GLU THR LEU PRO SER LEU LEU LEU ILE ASP GLU ALA SEQRES 3 D 415 ALA ALA VAL LEU GLY ARG MET ILE GLN GLY LEU ARG THR SEQRES 4 D 415 GLY ILE PRO TYR ILE HIS THR GLU ASN ASP SER ILE LYS SEQRES 5 D 415 ALA ASN PRO ILE LEU ARG THR ALA LEU TRP GLN ALA ALA SEQRES 6 D 415 TYR VAL LEU GLU LYS ALA TYR ARG ARG ARG TYR ARG VAL SEQRES 7 D 415 PRO TRP THR ALA ARG ARG TYR MET ARG GLU LEU THR PRO SEQRES 8 D 415 ARG GLN ASP GLY ARG ASN ALA ASN ARG GLU ALA VAL MET SEQRES 9 D 415 ALA LYS GLU PHE PRO PRO GLY ALA GLU LEU ASN SER ASP SEQRES 10 D 415 HIS PRO VAL GLN GLU ILE LEU PRO ALA MET ILE ILE ASP SEQRES 11 D 415 ALA GLU ASP HIS ILE LEU PHE CYS TYR LEU PRO SER CYS SEQRES 12 D 415 VAL SER PRO ALA ILE MET THR ILE ILE ASP ALA ALA VAL SEQRES 13 D 415 GLY THR LEU ALA THR THR LYS ASP GLY HIS LEU GLN LYS SEQRES 14 D 415 LYS SER ARG ALA ARG GLU GLY GLU ARG ALA ARG VAL GLU SEQRES 15 D 415 MET GLN LYS VAL LYS GLY LYS GLY LYS GLN GLU GLU GLU SEQRES 16 D 415 GLY GLN GLU LYS LEU GLY ALA ASN TRP ARG GLU ALA LEU SEQRES 17 D 415 ASP LEU PHE ARG GLN GLY ALA CYS LYS MET THR PRO GLY SEQRES 18 D 415 VAL LEU THR PHE ALA PRO ALA TRP TRP PRO VAL GLY HIS SEQRES 19 D 415 GLU ASN GLN LEU PRO GLY PRO ALA SER THR LEU LYS PRO SEQRES 20 D 415 PRO LYS GLY GLU GLY ARG MET PHE LEU SER ASP ILE PRO SEQRES 21 D 415 ILE ALA SER ALA LEU VAL GLY ALA ILE LEU ALA GLN ILE SEQRES 22 D 415 ASN GLN PRO LEU PHE GLU SER GLY VAL LYS VAL LEU ARG SEQRES 23 D 415 GLU LEU TYR SER ASN SER LYS LEU THR LYS ASP HIS SER SEQRES 24 D 415 THR VAL SER LYS ILE ILE GLU ILE TRP PHE SER PRO PHE SEQRES 25 D 415 SER SER LEU SER LEU ILE VAL ASN ARG ALA THR PRO ILE SEQRES 26 D 415 HIS ARG ASP THR SER GLY PRO ILE GLU GLY MET ASP ILE SEQRES 27 D 415 LEU VAL THR GLY GLY ASN TYR SER ASN GLY VAL LEU VAL SEQRES 28 D 415 THR PRO SER PHE ASN ARG ARG TRP THR TYR ASN PRO GLY SEQRES 29 D 415 CYS VAL VAL ALA LEU LEU GLY LYS LEU VAL LEU HIS GLY SEQRES 30 D 415 VAL PRO GLU VAL ASP GLY GLU ARG TYR CYS MET ALA HIS SEQRES 31 D 415 PHE TRP ARG GLU ARG LEU PHE ASP ALA ALA GLY VAL PRO SEQRES 32 D 415 PHE PRO TYR PRO SER LYS TRP GLN GLU SER TYR THR SEQRES 1 E 12 DC DG DA DT DC 5CM DG DC DT DA DC DG SEQRES 1 F 12 DC DG DT DA DG DC DT DG DA DT DC DG SEQRES 1 G 415 MET SER ALA ILE PRO PHE SER THR ASP ASP CYS SER GLN SEQRES 2 G 415 ASP GLU THR LEU PRO SER LEU LEU LEU ILE ASP GLU ALA SEQRES 3 G 415 ALA ALA VAL LEU GLY ARG MET ILE GLN GLY LEU ARG THR SEQRES 4 G 415 GLY ILE PRO TYR ILE HIS THR GLU ASN ASP SER ILE LYS SEQRES 5 G 415 ALA ASN PRO ILE LEU ARG THR ALA LEU TRP GLN ALA ALA SEQRES 6 G 415 TYR VAL LEU GLU LYS ALA TYR ARG ARG ARG TYR ARG VAL SEQRES 7 G 415 PRO TRP THR ALA ARG ARG TYR MET ARG GLU LEU THR PRO SEQRES 8 G 415 ARG GLN ASP GLY ARG ASN ALA ASN ARG GLU ALA VAL MET SEQRES 9 G 415 ALA LYS GLU PHE PRO PRO GLY ALA GLU LEU ASN SER ASP SEQRES 10 G 415 HIS PRO VAL GLN GLU ILE LEU PRO ALA MET ILE ILE ASP SEQRES 11 G 415 ALA GLU ASP HIS ILE LEU PHE CYS TYR LEU PRO SER CYS SEQRES 12 G 415 VAL SER PRO ALA ILE MET THR ILE ILE ASP ALA ALA VAL SEQRES 13 G 415 GLY THR LEU ALA THR THR LYS ASP GLY HIS LEU GLN LYS SEQRES 14 G 415 LYS SER ARG ALA ARG GLU GLY GLU ARG ALA ARG VAL GLU SEQRES 15 G 415 MET GLN LYS VAL LYS GLY LYS GLY LYS GLN GLU GLU GLU SEQRES 16 G 415 GLY GLN GLU LYS LEU GLY ALA ASN TRP ARG GLU ALA LEU SEQRES 17 G 415 ASP LEU PHE ARG GLN GLY ALA CYS LYS MET THR PRO GLY SEQRES 18 G 415 VAL LEU THR PHE ALA PRO ALA TRP TRP PRO VAL GLY HIS SEQRES 19 G 415 GLU ASN GLN LEU PRO GLY PRO ALA SER THR LEU LYS PRO SEQRES 20 G 415 PRO LYS GLY GLU GLY ARG MET PHE LEU SER ASP ILE PRO SEQRES 21 G 415 ILE ALA SER ALA LEU VAL GLY ALA ILE LEU ALA GLN ILE SEQRES 22 G 415 ASN GLN PRO LEU PHE GLU SER GLY VAL LYS VAL LEU ARG SEQRES 23 G 415 GLU LEU TYR SER ASN SER LYS LEU THR LYS ASP HIS SER SEQRES 24 G 415 THR VAL SER LYS ILE ILE GLU ILE TRP PHE SER PRO PHE SEQRES 25 G 415 SER SER LEU SER LEU ILE VAL ASN ARG ALA THR PRO ILE SEQRES 26 G 415 HIS ARG ASP THR SER GLY PRO ILE GLU GLY MET ASP ILE SEQRES 27 G 415 LEU VAL THR GLY GLY ASN TYR SER ASN GLY VAL LEU VAL SEQRES 28 G 415 THR PRO SER PHE ASN ARG ARG TRP THR TYR ASN PRO GLY SEQRES 29 G 415 CYS VAL VAL ALA LEU LEU GLY LYS LEU VAL LEU HIS GLY SEQRES 30 G 415 VAL PRO GLU VAL ASP GLY GLU ARG TYR CYS MET ALA HIS SEQRES 31 G 415 PHE TRP ARG GLU ARG LEU PHE ASP ALA ALA GLY VAL PRO SEQRES 32 G 415 PHE PRO TYR PRO SER LYS TRP GLN GLU SER TYR THR SEQRES 1 H 12 DC DG DA DT DC 5CM DG DC DT DA DC DG SEQRES 1 I 12 DC DG DT DA DG DC DT DG DA DT DC DG SEQRES 1 J 415 MET SER ALA ILE PRO PHE SER THR ASP ASP CYS SER GLN SEQRES 2 J 415 ASP GLU THR LEU PRO SER LEU LEU LEU ILE ASP GLU ALA SEQRES 3 J 415 ALA ALA VAL LEU GLY ARG MET ILE GLN GLY LEU ARG THR SEQRES 4 J 415 GLY ILE PRO TYR ILE HIS THR GLU ASN ASP SER ILE LYS SEQRES 5 J 415 ALA ASN PRO ILE LEU ARG THR ALA LEU TRP GLN ALA ALA SEQRES 6 J 415 TYR VAL LEU GLU LYS ALA TYR ARG ARG ARG TYR ARG VAL SEQRES 7 J 415 PRO TRP THR ALA ARG ARG TYR MET ARG GLU LEU THR PRO SEQRES 8 J 415 ARG GLN ASP GLY ARG ASN ALA ASN ARG GLU ALA VAL MET SEQRES 9 J 415 ALA LYS GLU PHE PRO PRO GLY ALA GLU LEU ASN SER ASP SEQRES 10 J 415 HIS PRO VAL GLN GLU ILE LEU PRO ALA MET ILE ILE ASP SEQRES 11 J 415 ALA GLU ASP HIS ILE LEU PHE CYS TYR LEU PRO SER CYS SEQRES 12 J 415 VAL SER PRO ALA ILE MET THR ILE ILE ASP ALA ALA VAL SEQRES 13 J 415 GLY THR LEU ALA THR THR LYS ASP GLY HIS LEU GLN LYS SEQRES 14 J 415 LYS SER ARG ALA ARG GLU GLY GLU ARG ALA ARG VAL GLU SEQRES 15 J 415 MET GLN LYS VAL LYS GLY LYS GLY LYS GLN GLU GLU GLU SEQRES 16 J 415 GLY GLN GLU LYS LEU GLY ALA ASN TRP ARG GLU ALA LEU SEQRES 17 J 415 ASP LEU PHE ARG GLN GLY ALA CYS LYS MET THR PRO GLY SEQRES 18 J 415 VAL LEU THR PHE ALA PRO ALA TRP TRP PRO VAL GLY HIS SEQRES 19 J 415 GLU ASN GLN LEU PRO GLY PRO ALA SER THR LEU LYS PRO SEQRES 20 J 415 PRO LYS GLY GLU GLY ARG MET PHE LEU SER ASP ILE PRO SEQRES 21 J 415 ILE ALA SER ALA LEU VAL GLY ALA ILE LEU ALA GLN ILE SEQRES 22 J 415 ASN GLN PRO LEU PHE GLU SER GLY VAL LYS VAL LEU ARG SEQRES 23 J 415 GLU LEU TYR SER ASN SER LYS LEU THR LYS ASP HIS SER SEQRES 24 J 415 THR VAL SER LYS ILE ILE GLU ILE TRP PHE SER PRO PHE SEQRES 25 J 415 SER SER LEU SER LEU ILE VAL ASN ARG ALA THR PRO ILE SEQRES 26 J 415 HIS ARG ASP THR SER GLY PRO ILE GLU GLY MET ASP ILE SEQRES 27 J 415 LEU VAL THR GLY GLY ASN TYR SER ASN GLY VAL LEU VAL SEQRES 28 J 415 THR PRO SER PHE ASN ARG ARG TRP THR TYR ASN PRO GLY SEQRES 29 J 415 CYS VAL VAL ALA LEU LEU GLY LYS LEU VAL LEU HIS GLY SEQRES 30 J 415 VAL PRO GLU VAL ASP GLY GLU ARG TYR CYS MET ALA HIS SEQRES 31 J 415 PHE TRP ARG GLU ARG LEU PHE ASP ALA ALA GLY VAL PRO SEQRES 32 J 415 PHE PRO TYR PRO SER LYS TRP GLN GLU SER TYR THR SEQRES 1 K 12 DC DG DA DT DC 5CM DG DC DT DA DC DG SEQRES 1 L 12 DC DG DT DA DG DC DT DG DA DT DC DG HET 5CM B 6 20 HET 5CM E 6 20 HET 5CM H 6 20 HET 5CM K 6 20 HET MN A 501 1 HET OGA A 502 10 HET MN D 501 1 HET OGA D 502 10 HET MN G 501 1 HET OGA G 502 10 HET MN J 501 1 HET OGA J 502 10 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM OGA N-OXALYLGLYCINE FORMUL 2 5CM 4(C10 H16 N3 O7 P) FORMUL 13 MN 4(MN 2+) FORMUL 14 OGA 4(C4 H5 N O5) FORMUL 21 HOH *936(H2 O) HELIX 1 AA1 LEU A 17 GLY A 40 1 24 HELIX 2 AA2 ASP A 49 ASN A 54 1 6 HELIX 3 AA3 ASN A 54 TYR A 72 1 19 HELIX 4 AA4 THR A 81 LEU A 89 1 9 HELIX 5 AA5 ASN A 97 PHE A 108 1 12 HELIX 6 AA6 SER A 145 THR A 162 1 18 HELIX 7 AA7 GLY A 165 ARG A 174 1 10 HELIX 8 AA8 ASN A 203 PHE A 211 5 9 HELIX 9 AA9 ALA A 242 LYS A 246 5 5 HELIX 10 AB1 GLY A 250 ILE A 259 1 10 HELIX 11 AB2 ILE A 259 ASN A 274 1 16 HELIX 12 AB3 ASN A 274 ASN A 291 1 18 HELIX 13 AB4 SER A 292 THR A 295 5 4 HELIX 14 AB5 ASP A 297 GLU A 306 1 10 HELIX 15 AB6 PRO A 353 ASN A 356 5 4 HELIX 16 AB7 ARG A 393 GLY A 401 1 9 HELIX 17 AB8 LYS A 409 THR A 415 5 7 HELIX 18 AB9 PRO D 18 GLY D 40 1 23 HELIX 19 AC1 ASP D 49 ASN D 54 1 6 HELIX 20 AC2 ASN D 54 TYR D 72 1 19 HELIX 21 AC3 THR D 81 LEU D 89 1 9 HELIX 22 AC4 ASN D 97 PHE D 108 1 12 HELIX 23 AC5 SER D 145 ALA D 160 1 16 HELIX 24 AC6 GLY D 165 VAL D 186 1 22 HELIX 25 AC7 ASN D 203 PHE D 211 5 9 HELIX 26 AC8 ALA D 242 LYS D 246 5 5 HELIX 27 AC9 GLY D 250 ILE D 259 1 10 HELIX 28 AD1 ILE D 259 ASN D 274 1 16 HELIX 29 AD2 ASN D 274 ASN D 291 1 18 HELIX 30 AD3 SER D 292 THR D 295 5 4 HELIX 31 AD4 ASP D 297 GLU D 306 1 10 HELIX 32 AD5 PRO D 353 ASN D 356 5 4 HELIX 33 AD6 ARG D 393 GLY D 401 1 9 HELIX 34 AD7 PRO G 18 GLY G 40 1 23 HELIX 35 AD8 ASN G 54 TYR G 72 1 19 HELIX 36 AD9 THR G 81 LEU G 89 1 9 HELIX 37 AE1 ASN G 97 PHE G 108 1 12 HELIX 38 AE2 SER G 145 THR G 162 1 18 HELIX 39 AE3 GLY G 165 ARG G 174 1 10 HELIX 40 AE4 ASN G 203 PHE G 211 5 9 HELIX 41 AE5 ALA G 242 LYS G 246 5 5 HELIX 42 AE6 GLY G 250 ILE G 259 1 10 HELIX 43 AE7 ILE G 259 ASN G 274 1 16 HELIX 44 AE8 ASN G 274 ASN G 291 1 18 HELIX 45 AE9 SER G 292 THR G 295 5 4 HELIX 46 AF1 ASP G 297 GLU G 306 1 10 HELIX 47 AF2 PRO G 353 ASN G 356 5 4 HELIX 48 AF3 ARG G 393 ALA G 400 1 8 HELIX 49 AF4 LYS G 409 THR G 415 5 7 HELIX 50 AF5 PRO J 18 GLY J 40 1 23 HELIX 51 AF6 ASN J 54 TYR J 72 1 19 HELIX 52 AF7 THR J 81 LEU J 89 1 9 HELIX 53 AF8 ASN J 97 PHE J 108 1 12 HELIX 54 AF9 SER J 145 THR J 161 1 17 HELIX 55 AG1 GLY J 165 MET J 183 1 19 HELIX 56 AG2 ASN J 203 PHE J 211 5 9 HELIX 57 AG3 ALA J 242 LYS J 246 5 5 HELIX 58 AG4 GLY J 250 ILE J 259 1 10 HELIX 59 AG5 ILE J 259 ASN J 274 1 16 HELIX 60 AG6 ASN J 274 ASN J 291 1 18 HELIX 61 AG7 ASP J 297 GLU J 306 1 10 HELIX 62 AG8 PRO J 353 ASN J 356 5 4 HELIX 63 AG9 ARG J 393 GLY J 401 1 9 HELIX 64 AH1 LYS J 409 THR J 415 5 7 SHEET 1 AA1 8 ARG A 75 ARG A 77 0 SHEET 2 AA1 8 ALA A 126 ILE A 129 1 O ILE A 129 N TYR A 76 SHEET 3 AA1 8 ILE A 135 LEU A 140 -1 O TYR A 139 N ALA A 126 SHEET 4 AA1 8 VAL A 366 LEU A 369 -1 O ALA A 368 N CYS A 138 SHEET 5 AA1 8 ASP A 337 ASN A 344 -1 N LEU A 339 O VAL A 367 SHEET 6 AA1 8 GLU A 384 PHE A 391 -1 O MET A 388 N VAL A 340 SHEET 7 AA1 8 SER A 314 VAL A 319 -1 N SER A 316 O ALA A 389 SHEET 8 AA1 8 GLY A 221 PHE A 225 -1 N PHE A 225 O LEU A 315 SHEET 1 AA2 2 THR A 323 HIS A 326 0 SHEET 2 AA2 2 HIS A 376 VAL A 378 -1 O VAL A 378 N THR A 323 SHEET 1 AA3 2 VAL A 349 THR A 352 0 SHEET 2 AA3 2 ARG A 357 THR A 360 -1 O ARG A 357 N THR A 352 SHEET 1 AA4 8 ARG D 75 ARG D 77 0 SHEET 2 AA4 8 ALA D 126 ILE D 129 1 O ILE D 129 N TYR D 76 SHEET 3 AA4 8 ILE D 135 LEU D 140 -1 O LEU D 136 N ILE D 128 SHEET 4 AA4 8 VAL D 366 LEU D 369 -1 O ALA D 368 N CYS D 138 SHEET 5 AA4 8 ASP D 337 ASN D 344 -1 N LEU D 339 O VAL D 367 SHEET 6 AA4 8 GLU D 384 PHE D 391 -1 O MET D 388 N VAL D 340 SHEET 7 AA4 8 SER D 314 VAL D 319 -1 N SER D 316 O ALA D 389 SHEET 8 AA4 8 GLY D 221 PHE D 225 -1 N PHE D 225 O LEU D 315 SHEET 1 AA5 2 THR D 323 HIS D 326 0 SHEET 2 AA5 2 HIS D 376 VAL D 378 -1 O VAL D 378 N THR D 323 SHEET 1 AA6 2 VAL D 349 THR D 352 0 SHEET 2 AA6 2 ARG D 357 THR D 360 -1 O ARG D 357 N THR D 352 SHEET 1 AA7 8 ARG G 75 ARG G 77 0 SHEET 2 AA7 8 ALA G 126 ILE G 129 1 O ILE G 129 N TYR G 76 SHEET 3 AA7 8 ILE G 135 LEU G 140 -1 O TYR G 139 N ALA G 126 SHEET 4 AA7 8 CYS G 365 LEU G 369 -1 O ALA G 368 N CYS G 138 SHEET 5 AA7 8 ASP G 337 ASN G 344 -1 N LEU G 339 O VAL G 367 SHEET 6 AA7 8 GLU G 384 PHE G 391 -1 O HIS G 390 N ILE G 338 SHEET 7 AA7 8 SER G 314 VAL G 319 -1 N SER G 316 O ALA G 389 SHEET 8 AA7 8 GLY G 221 PHE G 225 -1 N LEU G 223 O LEU G 317 SHEET 1 AA8 2 THR G 323 HIS G 326 0 SHEET 2 AA8 2 HIS G 376 VAL G 378 -1 O VAL G 378 N THR G 323 SHEET 1 AA9 2 VAL G 349 THR G 352 0 SHEET 2 AA9 2 ARG G 357 THR G 360 -1 O TRP G 359 N LEU G 350 SHEET 1 AB1 8 ARG J 75 ARG J 77 0 SHEET 2 AB1 8 ALA J 126 ILE J 129 1 O MET J 127 N TYR J 76 SHEET 3 AB1 8 ILE J 135 LEU J 140 -1 O LEU J 136 N ILE J 128 SHEET 4 AB1 8 VAL J 366 LEU J 369 -1 O ALA J 368 N CYS J 138 SHEET 5 AB1 8 ASP J 337 ASN J 344 -1 N LEU J 339 O VAL J 367 SHEET 6 AB1 8 GLU J 384 PHE J 391 -1 O MET J 388 N VAL J 340 SHEET 7 AB1 8 SER J 314 VAL J 319 -1 N SER J 316 O ALA J 389 SHEET 8 AB1 8 GLY J 221 PHE J 225 -1 N LEU J 223 O LEU J 317 SHEET 1 AB2 2 THR J 323 HIS J 326 0 SHEET 2 AB2 2 HIS J 376 VAL J 378 -1 O VAL J 378 N THR J 323 SHEET 1 AB3 2 VAL J 349 THR J 352 0 SHEET 2 AB3 2 ARG J 357 THR J 360 -1 O ARG J 357 N THR J 352 LINK O3' DC B 5 P 5CM B 6 1555 1555 1.60 LINK O3' 5CM B 6 P DG B 7 1555 1555 1.62 LINK O3' DC E 5 P 5CM E 6 1555 1555 1.54 LINK O3' 5CM E 6 P DG E 7 1555 1555 1.50 LINK O3' DC H 5 P 5CM H 6 1555 1555 1.60 LINK O3' 5CM H 6 P DG H 7 1555 1555 1.62 LINK O3' DC K 5 P 5CM K 6 1555 1555 1.60 LINK O3' 5CM K 6 P DG K 7 1555 1555 1.61 LINK NE2 HIS A 326 MN MN A 501 1555 1555 2.19 LINK OD1 ASP A 328 MN MN A 501 1555 1555 2.71 LINK OD2 ASP A 328 MN MN A 501 1555 1555 2.31 LINK NE2 HIS A 376 MN MN A 501 1555 1555 2.47 LINK MN MN A 501 O2' OGA A 502 1555 1555 2.27 LINK MN MN A 501 O1 OGA A 502 1555 1555 2.14 LINK MN MN A 501 O HOH A 655 1555 1555 2.16 LINK NE2 HIS D 326 MN MN D 501 1555 1555 2.25 LINK OD1 ASP D 328 MN MN D 501 1555 1555 2.63 LINK OD2 ASP D 328 MN MN D 501 1555 1555 2.35 LINK NE2 HIS D 376 MN MN D 501 1555 1555 2.31 LINK MN MN D 501 O2 OGA D 502 1555 1555 2.26 LINK MN MN D 501 O2' OGA D 502 1555 1555 2.31 LINK MN MN D 501 O HOH D 686 1555 1555 2.07 LINK NE2 HIS G 326 MN MN G 501 1555 1555 2.19 LINK OD2 ASP G 328 MN MN G 501 1555 1555 2.03 LINK NE2 HIS G 376 MN MN G 501 1555 1555 2.28 LINK MN MN G 501 O1 OGA G 502 1555 1555 2.17 LINK MN MN G 501 O2' OGA G 502 1555 1555 2.38 LINK MN MN G 501 O HOH G 658 1555 1555 2.23 LINK NE2 HIS J 326 MN MN J 501 1555 1555 2.22 LINK OD2 ASP J 328 MN MN J 501 1555 1555 2.14 LINK NE2 HIS J 376 MN MN J 501 1555 1555 2.38 LINK MN MN J 501 O2 OGA J 502 1555 1555 2.34 LINK MN MN J 501 O2' OGA J 502 1555 1555 2.27 LINK MN MN J 501 O HOH J 633 1555 1555 2.33 CRYST1 86.569 127.631 212.236 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004712 0.00000