HEADER VIRUS/IMMUNE SYSTEM 06-JUN-23 8JN6 TITLE CRYO-EM STRUCTURE OF THE SMALL TAIL CLUB SHAPE PARTICLE OF DENGUE TITLE 2 VIRUS SEROTYPE 3 STRAIN CH53489 IN COMPLEX WITH HUMAN ANTIBODY DENV- TITLE 3 290 FAB AT 37 DEG C COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN (FRAGMENT); COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN ANTIBODY DENV-290 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HUMAN ANTIBODY DENV-290 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: AEDES ALBOPICTUS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: ASIAN TIGER MOSQUITO; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7160; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 13 EXPRESSION_SYSTEM_CELL: EXPI293F; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 20 EXPRESSION_SYSTEM_CELL: EXPI293F KEYWDS DENGUE VIRUS, HUMAN ANTIBODY, DENGUE-ANTIBODY STRUCTURE, VIRUS, KEYWDS 2 VIRUS-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN C, E, H, L AUTHOR G.FIBRIANSAH,T.S.NG,A.W.K.TAN,J.SHI,S.M.LOK REVDAT 1 12-JUN-24 8JN6 0 JRNL AUTH G.FIBRIANSAH,T.S.NG,X.N.LIM,A.SHEBANOVA,L.C.NG,S.L.TAN, JRNL AUTH 2 A.W.K.TAN,J.SHI,J.E.CROWE,S.M.LOK JRNL TITL ULTRAPOTENT HUMAN ANTIBODIES LOCK E PROTEIN DIMERS OF JRNL TITL 2 DIVERSE DENV3 MORPHOLOGICAL VARIANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 9.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : UCSF CHIMERA, PHENIX, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3J6S REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.800 REMARK 3 NUMBER OF PARTICLES : 12156 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8JN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038140. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : DENGUE VIRUS SEROTYPE 3 STRAIN REMARK 245 CH53489 IN COMPLEX WITH HUMAN REMARK 245 ANTIBODY DENV-290 FAB AT 37 DEG REMARK 245 C; DENGUE VIRUS SEROTYPE 3 REMARK 245 STRAIN CH53489; HUMAN ANTIBODY REMARK 245 DENV-290 FAB (HEAVY AND LIGHT REMARK 245 CHAIN) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 92-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.533398 -0.845865 0.000000 448.86369 REMARK 350 BIOMT2 2 0.845865 0.533398 0.000000 -129.70770 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -182.85033 REMARK 350 BIOMT1 3 -0.939622 -0.342213 0.000000 780.38778 REMARK 350 BIOMT2 3 0.342213 -0.939622 0.000000 546.31387 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -164.56530 REMARK 350 BIOMT1 4 -0.135512 0.990776 0.000000 49.49995 REMARK 350 BIOMT2 4 -0.990776 -0.135512 0.000000 727.19050 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -146.28026 REMARK 350 BIOMT1 5 0.997005 -0.077333 0.000000 27.47207 REMARK 350 BIOMT2 5 0.077333 0.997005 0.000000 -25.42371 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -127.99523 REMARK 350 BIOMT1 6 -0.286672 -0.958029 0.000000 767.68765 REMARK 350 BIOMT2 6 0.958029 -0.286672 0.000000 112.39595 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -109.71020 REMARK 350 BIOMT1 7 -0.875613 0.483013 0.000000 476.26948 REMARK 350 BIOMT2 7 -0.483013 -0.875613 0.000000 806.65009 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -91.42517 REMARK 350 BIOMT1 8 0.657453 0.753496 0.000000 -140.54439 REMARK 350 BIOMT2 8 -0.753496 0.657453 0.000000 374.84686 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -73.14013 REMARK 350 BIOMT1 9 0.597214 -0.802082 0.000000 412.06510 REMARK 350 BIOMT2 9 0.802082 0.597214 0.000000 -136.55917 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -54.85510 REMARK 350 BIOMT1 10 -0.910344 -0.413852 0.000000 794.87515 REMARK 350 BIOMT2 10 0.413852 -0.910344 0.000000 511.80017 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -36.57007 REMARK 350 BIOMT1 11 -0.211726 0.977329 0.000000 80.16383 REMARK 350 BIOMT2 11 -0.977329 -0.211726 0.000000 748.65688 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -18.28503 REMARK 350 BIOMT1 12 -0.211726 -0.977329 0.000000 748.65688 REMARK 350 BIOMT2 12 0.977329 -0.211726 0.000000 80.16383 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 18.28503 REMARK 350 BIOMT1 13 -0.910344 0.413852 0.000000 511.80017 REMARK 350 BIOMT2 13 -0.413852 -0.910344 0.000000 794.87515 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 36.57007 REMARK 350 BIOMT1 14 0.597214 0.802082 0.000000 -136.55917 REMARK 350 BIOMT2 14 -0.802082 0.597214 0.000000 412.06510 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 54.85510 REMARK 350 BIOMT1 15 0.657453 -0.753496 0.000000 374.84686 REMARK 350 BIOMT2 15 0.753496 0.657453 0.000000 -140.54439 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 73.14013 REMARK 350 BIOMT1 16 -0.875613 -0.483013 0.000000 806.65009 REMARK 350 BIOMT2 16 0.483013 -0.875613 0.000000 476.26948 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 91.42516 REMARK 350 BIOMT1 17 -0.286672 0.958029 0.000000 112.39595 REMARK 350 BIOMT2 17 -0.958029 -0.286672 0.000000 767.68765 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 109.71020 REMARK 350 BIOMT1 18 0.997005 0.077333 0.000000 -25.42371 REMARK 350 BIOMT2 18 -0.077333 0.997005 0.000000 27.47207 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 127.99523 REMARK 350 BIOMT1 19 -0.135512 -0.990776 0.000000 727.19050 REMARK 350 BIOMT2 19 0.990776 -0.135512 0.000000 49.49995 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 146.28026 REMARK 350 BIOMT1 20 -0.939622 0.342213 0.000000 546.31387 REMARK 350 BIOMT2 20 -0.342213 -0.939622 0.000000 780.38778 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 164.56530 REMARK 350 BIOMT1 21 0.533398 0.845865 0.000000 -129.70770 REMARK 350 BIOMT2 21 -0.845865 0.533398 0.000000 448.86369 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 182.85033 REMARK 350 BIOMT1 22 0.713754 -0.700397 0.000000 337.43189 REMARK 350 BIOMT2 22 0.700397 0.713754 0.000000 -141.63947 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 201.13536 REMARK 350 BIOMT1 23 -0.835638 -0.549280 0.000000 815.64207 REMARK 350 BIOMT2 23 0.549280 -0.835638 0.000000 439.93459 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 219.42040 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 395 REMARK 465 ILE C 396 REMARK 465 GLY C 397 REMARK 465 LYS C 398 REMARK 465 MET C 399 REMARK 465 PHE C 400 REMARK 465 GLU C 401 REMARK 465 ALA C 402 REMARK 465 THR C 403 REMARK 465 ALA C 404 REMARK 465 ARG C 405 REMARK 465 GLY C 406 REMARK 465 ALA C 407 REMARK 465 ARG C 408 REMARK 465 ARG C 409 REMARK 465 MET C 410 REMARK 465 ALA C 411 REMARK 465 ILE C 412 REMARK 465 LEU C 413 REMARK 465 GLY C 414 REMARK 465 ASP C 415 REMARK 465 THR C 416 REMARK 465 ALA C 417 REMARK 465 TRP C 418 REMARK 465 ASP C 419 REMARK 465 PHE C 420 REMARK 465 GLY C 421 REMARK 465 SER C 422 REMARK 465 VAL C 423 REMARK 465 GLY C 424 REMARK 465 GLY C 425 REMARK 465 VAL C 426 REMARK 465 LEU C 427 REMARK 465 ASN C 428 REMARK 465 SER C 429 REMARK 465 LEU C 430 REMARK 465 GLY C 431 REMARK 465 LYS C 432 REMARK 465 MET C 433 REMARK 465 VAL C 434 REMARK 465 HIS C 435 REMARK 465 GLN C 436 REMARK 465 ILE C 437 REMARK 465 PHE C 438 REMARK 465 GLY C 439 REMARK 465 SER C 440 REMARK 465 ALA C 441 REMARK 465 TYR C 442 REMARK 465 THR C 443 REMARK 465 ALA C 444 REMARK 465 LEU C 445 REMARK 465 PHE C 446 REMARK 465 SER C 447 REMARK 465 GLY C 448 REMARK 465 VAL C 449 REMARK 465 SER C 450 REMARK 465 TRP C 451 REMARK 465 ILE C 452 REMARK 465 MET C 453 REMARK 465 LYS C 454 REMARK 465 ILE C 455 REMARK 465 GLY C 456 REMARK 465 ILE C 457 REMARK 465 GLY C 458 REMARK 465 VAL C 459 REMARK 465 LEU C 460 REMARK 465 LEU C 461 REMARK 465 THR C 462 REMARK 465 TRP C 463 REMARK 465 ILE C 464 REMARK 465 GLY C 465 REMARK 465 LEU C 466 REMARK 465 ASN C 467 REMARK 465 SER C 468 REMARK 465 LYS C 469 REMARK 465 ASN C 470 REMARK 465 THR C 471 REMARK 465 SER C 472 REMARK 465 MET C 473 REMARK 465 SER C 474 REMARK 465 PHE C 475 REMARK 465 SER C 476 REMARK 465 CYS C 477 REMARK 465 ILE C 478 REMARK 465 ALA C 479 REMARK 465 ILE C 480 REMARK 465 GLY C 481 REMARK 465 ILE C 482 REMARK 465 ILE C 483 REMARK 465 THR C 484 REMARK 465 LEU C 485 REMARK 465 TYR C 486 REMARK 465 LEU C 487 REMARK 465 GLY C 488 REMARK 465 ALA C 489 REMARK 465 VAL C 490 REMARK 465 VAL C 491 REMARK 465 GLN C 492 REMARK 465 ALA C 493 REMARK 465 SER E 395 REMARK 465 ILE E 396 REMARK 465 GLY E 397 REMARK 465 LYS E 398 REMARK 465 MET E 399 REMARK 465 PHE E 400 REMARK 465 GLU E 401 REMARK 465 ALA E 402 REMARK 465 THR E 403 REMARK 465 ALA E 404 REMARK 465 ARG E 405 REMARK 465 GLY E 406 REMARK 465 ALA E 407 REMARK 465 ARG E 408 REMARK 465 ARG E 409 REMARK 465 MET E 410 REMARK 465 ALA E 411 REMARK 465 ILE E 412 REMARK 465 LEU E 413 REMARK 465 GLY E 414 REMARK 465 ASP E 415 REMARK 465 THR E 416 REMARK 465 ALA E 417 REMARK 465 TRP E 418 REMARK 465 ASP E 419 REMARK 465 PHE E 420 REMARK 465 GLY E 421 REMARK 465 SER E 422 REMARK 465 VAL E 423 REMARK 465 GLY E 424 REMARK 465 GLY E 425 REMARK 465 VAL E 426 REMARK 465 LEU E 427 REMARK 465 ASN E 428 REMARK 465 SER E 429 REMARK 465 LEU E 430 REMARK 465 GLY E 431 REMARK 465 LYS E 432 REMARK 465 MET E 433 REMARK 465 VAL E 434 REMARK 465 HIS E 435 REMARK 465 GLN E 436 REMARK 465 ILE E 437 REMARK 465 PHE E 438 REMARK 465 GLY E 439 REMARK 465 SER E 440 REMARK 465 ALA E 441 REMARK 465 TYR E 442 REMARK 465 THR E 443 REMARK 465 ALA E 444 REMARK 465 LEU E 445 REMARK 465 PHE E 446 REMARK 465 SER E 447 REMARK 465 GLY E 448 REMARK 465 VAL E 449 REMARK 465 SER E 450 REMARK 465 TRP E 451 REMARK 465 ILE E 452 REMARK 465 MET E 453 REMARK 465 LYS E 454 REMARK 465 ILE E 455 REMARK 465 GLY E 456 REMARK 465 ILE E 457 REMARK 465 GLY E 458 REMARK 465 VAL E 459 REMARK 465 LEU E 460 REMARK 465 LEU E 461 REMARK 465 THR E 462 REMARK 465 TRP E 463 REMARK 465 ILE E 464 REMARK 465 GLY E 465 REMARK 465 LEU E 466 REMARK 465 ASN E 467 REMARK 465 SER E 468 REMARK 465 LYS E 469 REMARK 465 ASN E 470 REMARK 465 THR E 471 REMARK 465 SER E 472 REMARK 465 MET E 473 REMARK 465 SER E 474 REMARK 465 PHE E 475 REMARK 465 SER E 476 REMARK 465 CYS E 477 REMARK 465 ILE E 478 REMARK 465 ALA E 479 REMARK 465 ILE E 480 REMARK 465 GLY E 481 REMARK 465 ILE E 482 REMARK 465 ILE E 483 REMARK 465 THR E 484 REMARK 465 LEU E 485 REMARK 465 TYR E 486 REMARK 465 LEU E 487 REMARK 465 GLY E 488 REMARK 465 ALA E 489 REMARK 465 VAL E 490 REMARK 465 VAL E 491 REMARK 465 GLN E 492 REMARK 465 ALA E 493 REMARK 465 HIS L 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36432 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 STRAIN 863DK IN REMARK 900 COMPLEX WITH HUMAN ANTIBODY DENV-290 FAB AT 4 DEG C (SUBPARTICLE REMARK 900 LLR-LRR) REMARK 900 RELATED ID: EMD-36433 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 STRAIN 863DK IN REMARK 900 COMPLEX WITH HUMAN ANTIBODY DENV-290 FAB AT 37 DEG C (SUBPARTICLE REMARK 900 LLR-LRR) REMARK 900 RELATED ID: EMD-36435 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE BIG TAIL CLUB SHAPE PARTICLE OF DENGUE REMARK 900 VIRUS SEROTYPE 3 STRAIN CH53489 IN COMPLEX WITH HUMAN ANTIBODY DENV- REMARK 900 290 FAB AT 37 DEG C REMARK 900 RELATED ID: EMD-36439 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 STRAIN 863DK IN REMARK 900 COMPLEX WITH HUMAN ANTIBODY DENV-290 FAB AT 4 DEG C REMARK 900 RELATED ID: EMD-36440 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 STRAIN 863DK IN REMARK 900 COMPLEX WITH HUMAN ANTIBODY DENV-290 FAB AT 37 DEG C REMARK 900 RELATED ID: EMD-36441 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 STRAIN CH53489 REMARK 900 SPHERICAL PARTICLE IN COMPLEX WITH HUMAN ANTIBODY DENV-290 FAB AT REMARK 900 37 DEG C REMARK 900 RELATED ID: EMD-36434 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE SMALL TAIL CLUB SHAPE PARTICLE OF DENGUE REMARK 900 VIRUS SEROTYPE 3 STRAIN CH53489 IN COMPLEX WITH HUMAN ANTIBODY DENV- REMARK 900 290 FAB AT 37 DEG C DBREF 8JN6 C 1 493 UNP Q07019 Q07019_9FLAV 167 659 DBREF 8JN6 E 1 493 UNP Q07019 Q07019_9FLAV 167 659 DBREF 8JN6 H 1 122 PDB 8JN6 8JN6 1 122 DBREF 8JN6 L 1 113 PDB 8JN6 8JN6 1 113 SEQRES 1 C 493 MET ARG CYS VAL GLY VAL GLY ASN ARG ASP PHE VAL GLU SEQRES 2 C 493 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 C 493 HIS GLY GLY CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 C 493 THR LEU ASP ILE GLU LEU GLN LYS THR GLU ALA THR GLN SEQRES 5 C 493 LEU ALA THR LEU ARG LYS LEU CYS ILE GLU GLY LYS ILE SEQRES 6 C 493 THR ASN ILE THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 C 493 GLU ALA ILE LEU PRO GLU GLU GLN ASP GLN ASN TYR VAL SEQRES 8 C 493 CYS LYS HIS THR TYR VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 C 493 CYS GLY LEU PHE GLY LYS GLY SER LEU VAL THR CYS ALA SEQRES 10 C 493 LYS PHE GLN CYS LEU GLU SER ILE GLU GLY LYS VAL VAL SEQRES 11 C 493 GLN HIS GLU ASN LEU LYS TYR THR VAL ILE ILE THR VAL SEQRES 12 C 493 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR GLN SEQRES 13 C 493 GLY VAL THR ALA GLU ILE THR PRO GLN ALA SER THR VAL SEQRES 14 C 493 GLU ALA ILE LEU PRO GLU TYR GLY THR LEU GLY LEU GLU SEQRES 15 C 493 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET ILE SEQRES 16 C 493 LEU LEU THR MET LYS ASN LYS ALA TRP MET VAL HIS ARG SEQRES 17 C 493 GLN TRP PHE PHE ASP LEU PRO LEU PRO TRP THR SER GLY SEQRES 18 C 493 ALA THR THR GLU THR PRO THR TRP ASN ARG LYS GLU LEU SEQRES 19 C 493 LEU VAL THR PHE LYS ASN ALA HIS ALA LYS LYS GLN GLU SEQRES 20 C 493 VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET HIS THR SEQRES 21 C 493 ALA LEU THR GLY ALA THR GLU ILE GLN ASN SER GLY GLY SEQRES 22 C 493 THR SER ILE PHE ALA GLY HIS LEU LYS CYS ARG LEU LYS SEQRES 23 C 493 MET ASP LYS LEU GLU LEU LYS GLY MET SER TYR ALA MET SEQRES 24 C 493 CYS LEU ASN THR PHE VAL LEU LYS LYS GLU VAL SER GLU SEQRES 25 C 493 THR GLN HIS GLY THR ILE LEU ILE LYS VAL GLU TYR LYS SEQRES 26 C 493 GLY GLU ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLU SEQRES 27 C 493 ASP GLY GLN GLY LYS ALA HIS ASN GLY ARG LEU ILE THR SEQRES 28 C 493 ALA ASN PRO VAL VAL THR LYS LYS GLU GLU PRO VAL ASN SEQRES 29 C 493 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER ASN ILE VAL SEQRES 30 C 493 ILE GLY ILE GLY ASP LYS ALA LEU LYS ILE ASN TRP TYR SEQRES 31 C 493 LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU ALA THR SEQRES 32 C 493 ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY ASP THR SEQRES 33 C 493 ALA TRP ASP PHE GLY SER VAL GLY GLY VAL LEU ASN SER SEQRES 34 C 493 LEU GLY LYS MET VAL HIS GLN ILE PHE GLY SER ALA TYR SEQRES 35 C 493 THR ALA LEU PHE SER GLY VAL SER TRP ILE MET LYS ILE SEQRES 36 C 493 GLY ILE GLY VAL LEU LEU THR TRP ILE GLY LEU ASN SER SEQRES 37 C 493 LYS ASN THR SER MET SER PHE SER CYS ILE ALA ILE GLY SEQRES 38 C 493 ILE ILE THR LEU TYR LEU GLY ALA VAL VAL GLN ALA SEQRES 1 E 493 MET ARG CYS VAL GLY VAL GLY ASN ARG ASP PHE VAL GLU SEQRES 2 E 493 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 E 493 HIS GLY GLY CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 E 493 THR LEU ASP ILE GLU LEU GLN LYS THR GLU ALA THR GLN SEQRES 5 E 493 LEU ALA THR LEU ARG LYS LEU CYS ILE GLU GLY LYS ILE SEQRES 6 E 493 THR ASN ILE THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 E 493 GLU ALA ILE LEU PRO GLU GLU GLN ASP GLN ASN TYR VAL SEQRES 8 E 493 CYS LYS HIS THR TYR VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 E 493 CYS GLY LEU PHE GLY LYS GLY SER LEU VAL THR CYS ALA SEQRES 10 E 493 LYS PHE GLN CYS LEU GLU SER ILE GLU GLY LYS VAL VAL SEQRES 11 E 493 GLN HIS GLU ASN LEU LYS TYR THR VAL ILE ILE THR VAL SEQRES 12 E 493 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR GLN SEQRES 13 E 493 GLY VAL THR ALA GLU ILE THR PRO GLN ALA SER THR VAL SEQRES 14 E 493 GLU ALA ILE LEU PRO GLU TYR GLY THR LEU GLY LEU GLU SEQRES 15 E 493 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET ILE SEQRES 16 E 493 LEU LEU THR MET LYS ASN LYS ALA TRP MET VAL HIS ARG SEQRES 17 E 493 GLN TRP PHE PHE ASP LEU PRO LEU PRO TRP THR SER GLY SEQRES 18 E 493 ALA THR THR GLU THR PRO THR TRP ASN ARG LYS GLU LEU SEQRES 19 E 493 LEU VAL THR PHE LYS ASN ALA HIS ALA LYS LYS GLN GLU SEQRES 20 E 493 VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET HIS THR SEQRES 21 E 493 ALA LEU THR GLY ALA THR GLU ILE GLN ASN SER GLY GLY SEQRES 22 E 493 THR SER ILE PHE ALA GLY HIS LEU LYS CYS ARG LEU LYS SEQRES 23 E 493 MET ASP LYS LEU GLU LEU LYS GLY MET SER TYR ALA MET SEQRES 24 E 493 CYS LEU ASN THR PHE VAL LEU LYS LYS GLU VAL SER GLU SEQRES 25 E 493 THR GLN HIS GLY THR ILE LEU ILE LYS VAL GLU TYR LYS SEQRES 26 E 493 GLY GLU ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLU SEQRES 27 E 493 ASP GLY GLN GLY LYS ALA HIS ASN GLY ARG LEU ILE THR SEQRES 28 E 493 ALA ASN PRO VAL VAL THR LYS LYS GLU GLU PRO VAL ASN SEQRES 29 E 493 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER ASN ILE VAL SEQRES 30 E 493 ILE GLY ILE GLY ASP LYS ALA LEU LYS ILE ASN TRP TYR SEQRES 31 E 493 LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU ALA THR SEQRES 32 E 493 ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY ASP THR SEQRES 33 E 493 ALA TRP ASP PHE GLY SER VAL GLY GLY VAL LEU ASN SER SEQRES 34 E 493 LEU GLY LYS MET VAL HIS GLN ILE PHE GLY SER ALA TYR SEQRES 35 E 493 THR ALA LEU PHE SER GLY VAL SER TRP ILE MET LYS ILE SEQRES 36 E 493 GLY ILE GLY VAL LEU LEU THR TRP ILE GLY LEU ASN SER SEQRES 37 E 493 LYS ASN THR SER MET SER PHE SER CYS ILE ALA ILE GLY SEQRES 38 E 493 ILE ILE THR LEU TYR LEU GLY ALA VAL VAL GLN ALA SEQRES 1 H 122 GLN VAL GLU LEU VAL GLU SER GLY GLY ASP VAL VAL GLN SEQRES 2 H 122 PRO GLY LYS SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 122 PHE THR PHE THR ASN TYR ALA MET HIS TRP LEU ARG GLN SEQRES 4 H 122 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 H 122 SER ASP VAL ASN ASP LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 122 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 122 LEU TYR LEU GLN MET ASN SER LEU THR PRO GLU ASP THR SEQRES 8 H 122 ALA VAL TYR TYR CYS ALA ARG GLU GLN ALA VAL GLY THR SEQRES 9 H 122 ASN PRO TRP ALA PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 122 VAL THR VAL SER SER SEQRES 1 L 113 HIS ILE VAL MET THR GLN SER PRO LEU SER LEU SER VAL SEQRES 2 L 113 THR PRO GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 113 GLN ILE SER SER TRP GLY SER ASP GLY LYS THR TYR LEU SEQRES 4 L 113 TYR TRP TYR LEU GLN LYS PRO GLY GLN SER PRO GLN LEU SEQRES 5 L 113 LEU ILE TYR GLU VAL SER SER ARG PHE SER GLY VAL SER SEQRES 6 L 113 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 113 LEU LYS ILE SER ARG VAL GLN ALA GLU ASP VAL GLY LEU SEQRES 8 L 113 TYR TYR CYS MET GLN GLY LEU HIS LEU PRO LEU THR PHE SEQRES 9 L 113 GLY GLN GLY THR ARG LEU GLU ILE LYS CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000