HEADER ISOMERASE 08-JUN-23 8JNW TITLE PFDXR - MN2+ - NADPH - MAMK89 QUATERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, COMPND 3 APICOPLASTIC; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE,DOXP COMPND 6 REDUCTOISOMERASE,DXP REDUCTOISOMERASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM HB3; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 GENE: DXR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TAKADA,Y.SAKAMOTO,N.TANAKA REVDAT 1 22-MAY-24 8JNW 0 JRNL AUTH M.A.ABDULLAZIZ,S.TAKADA,B.ILLARIONOV,L.PESSANHA DE CARVALHO, JRNL AUTH 2 Y.SAKAMOTO,S.HOFMANN,T.KNAK,A.L.KIFFE-DELF,F.MAZZONE, JRNL AUTH 3 K.PFEFFER,R.KALSCHEUER,A.BACHER,J.HELD,M.FISCHER,N.TANAKA, JRNL AUTH 4 T.KURZ JRNL TITL REVERSE N -SUBSTITUTED HYDROXAMIC ACID DERIVATIVES OF JRNL TITL 2 FOSMIDOMYCIN TARGET A PREVIOUSLY UNKNOWN SUBPOCKET OF JRNL TITL 3 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR). JRNL REF ACS INFECT DIS. V. 10 1739 2024 JRNL REFN ESSN 2373-8227 JRNL PMID 38647213 JRNL DOI 10.1021/ACSINFECDIS.4C00100 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 145766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 420 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 625 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6854 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6586 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9274 ; 2.240 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15248 ; 0.597 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 6.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ; 7.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1282 ;13.790 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1056 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7668 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1458 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3286 ; 1.997 ; 1.609 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3286 ; 1.997 ; 1.609 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4104 ; 2.985 ; 2.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4105 ; 2.986 ; 2.888 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3568 ; 3.096 ; 2.005 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3569 ; 3.095 ; 2.005 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5171 ; 4.742 ; 3.507 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8001 ; 6.339 ;17.570 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7858 ; 6.254 ;16.530 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7403 -16.2539 12.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0366 REMARK 3 T33: 0.0346 T12: 0.0080 REMARK 3 T13: -0.0122 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.1371 L22: 0.2114 REMARK 3 L33: 0.5702 L12: 0.1210 REMARK 3 L13: 0.1646 L23: 0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.0406 S13: -0.0418 REMARK 3 S21: 0.0542 S22: -0.0044 S23: -0.0317 REMARK 3 S31: 0.0799 S32: -0.0251 S33: -0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3141 14.8969 39.8913 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0419 REMARK 3 T33: 0.0074 T12: -0.0062 REMARK 3 T13: 0.0040 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.1818 L22: 0.1544 REMARK 3 L33: 0.3548 L12: 0.0088 REMARK 3 L13: 0.1994 L23: 0.1543 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.0186 S13: -0.0191 REMARK 3 S21: -0.0209 S22: 0.0429 S23: 0.0149 REMARK 3 S31: -0.0609 S32: 0.0177 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 63.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0, 20%(W/V) REMARK 280 PEG6000, AND 0.2 M CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.10050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 607 O HOH A 642 1.88 REMARK 500 O HOH B 631 O HOH B 881 2.03 REMARK 500 O HOH B 919 O HOH B 944 2.14 REMARK 500 O HOH B 666 O HOH B 897 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 206 CD GLU A 206 OE2 0.067 REMARK 500 GLU B 424 CD GLU B 424 OE2 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 355 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 MET B 279 CG - SD - CE ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 372 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 183 -151.83 64.45 REMARK 500 THR A 249 -154.13 -145.37 REMARK 500 LEU A 291 49.29 -97.15 REMARK 500 SER A 342 167.79 168.74 REMARK 500 LYS A 349 3.07 83.64 REMARK 500 ASP A 359 115.58 -175.75 REMARK 500 SER A 387 -53.26 81.17 REMARK 500 ASN A 413 -139.10 54.35 REMARK 500 SER B 183 -176.72 75.11 REMARK 500 ALA B 211 27.68 -142.73 REMARK 500 THR B 249 -153.29 -144.42 REMARK 500 LEU B 252 -7.60 74.49 REMARK 500 ASN B 255 10.55 80.45 REMARK 500 LYS B 292 94.08 -59.82 REMARK 500 HIS B 293 72.55 40.04 REMARK 500 SER B 342 171.26 170.04 REMARK 500 LYS B 349 2.37 84.29 REMARK 500 ASP B 359 112.78 -176.96 REMARK 500 SER B 387 -43.50 75.44 REMARK 500 ASN B 413 -136.41 54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 949 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 GLU A 233 OE1 94.3 REMARK 620 3 GLU A 233 OE2 144.3 50.7 REMARK 620 4 GLU A 315 OE2 96.2 97.0 94.9 REMARK 620 5 UW0 A 503 O1 111.2 154.4 103.7 83.4 REMARK 620 6 UW0 A 503 O2 96.1 99.2 85.0 158.9 76.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD1 REMARK 620 2 HOH A 699 O 86.4 REMARK 620 3 HOH A 747 O 83.8 72.9 REMARK 620 4 GLN B 239 O 171.1 88.1 101.3 REMARK 620 5 LEU B 241 O 87.7 144.2 141.3 92.7 REMARK 620 6 HOH B 740 O 92.0 70.1 142.9 79.5 74.8 REMARK 620 7 HOH B 815 O 105.4 139.4 70.1 83.3 76.0 145.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 139 O REMARK 620 2 GLU B 143 OE1 78.6 REMARK 620 3 GLU B 143 OE2 123.9 52.5 REMARK 620 4 ASN B 452 OD1 35.3 110.4 137.6 REMARK 620 5 HOH B 670 O 79.8 144.1 156.3 61.7 REMARK 620 6 HOH B 766 O 94.9 73.8 95.6 117.8 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD1 REMARK 620 2 GLU B 233 OE1 94.0 REMARK 620 3 GLU B 315 OE2 97.0 95.7 REMARK 620 4 UW0 B 503 O2 94.1 100.5 159.6 REMARK 620 5 UW0 B 503 O1 112.9 152.9 84.7 75.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 329 OD2 REMARK 620 2 HOH B 714 O 91.8 REMARK 620 3 HOH B 716 O 71.0 138.8 REMARK 620 4 HOH B 735 O 83.5 138.0 78.5 REMARK 620 5 HOH B 769 O 71.4 74.7 129.1 64.2 REMARK 620 6 HOH B 801 O 85.9 68.3 73.2 151.7 135.7 REMARK 620 7 HOH B 911 O 149.1 77.2 134.6 85.8 77.8 115.3 REMARK 620 8 HOH B 927 O 142.1 104.3 74.5 104.6 145.6 69.4 68.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8JNV RELATED DB: PDB DBREF 8JNW A 76 486 UNP O96693 DXR_PLAFX 76 486 DBREF 8JNW B 76 486 UNP O96693 DXR_PLAFX 76 486 SEQRES 1 A 411 LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SER SEQRES 2 A 411 ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS ASN SEQRES 3 A 411 LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR VAL SEQRES 4 A 411 ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG GLU SEQRES 5 A 411 PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER VAL SEQRES 6 A 411 TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS ASP SEQRES 7 A 411 TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET LYS SEQRES 8 A 411 GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL ILE SEQRES 9 A 411 GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET TYR SEQRES 10 A 411 ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN LYS SEQRES 11 A 411 GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS LEU SEQRES 12 A 411 LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL ASP SEQRES 13 A 411 SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN ASN SEQRES 14 A 411 LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SER SEQRES 15 A 411 LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SER SEQRES 16 A 411 GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU LYS SEQRES 17 A 411 ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS TRP SEQRES 18 A 411 LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR MET SEQRES 19 A 411 MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE LEU SEQRES 20 A 411 PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL HIS SEQRES 21 A 411 LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE ASP SEQRES 22 A 411 LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET GLN SEQRES 23 A 411 ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG ILE SEQRES 24 A 411 LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SER SEQRES 25 A 411 THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE PRO SEQRES 26 A 411 CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY ASN SEQRES 27 A 411 PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE ALA SEQRES 28 A 411 ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE ASP SEQRES 29 A 411 ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE ASN SEQRES 30 A 411 SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET LYS SEQRES 31 A 411 GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS ALA SEQRES 32 A 411 THR ASP ILE TYR ASN LYS HIS ASN SEQRES 1 B 411 LYS PRO ILE ASN VAL ALA ILE PHE GLY SER THR GLY SER SEQRES 2 B 411 ILE GLY THR ASN ALA LEU ASN ILE ILE ARG GLU CYS ASN SEQRES 3 B 411 LYS ILE GLU ASN VAL PHE ASN VAL LYS ALA LEU TYR VAL SEQRES 4 B 411 ASN LYS SER VAL ASN GLU LEU TYR GLU GLN ALA ARG GLU SEQRES 5 B 411 PHE LEU PRO GLU TYR LEU CYS ILE HIS ASP LYS SER VAL SEQRES 6 B 411 TYR GLU GLU LEU LYS GLU LEU VAL LYS ASN ILE LYS ASP SEQRES 7 B 411 TYR LYS PRO ILE ILE LEU CYS GLY ASP GLU GLY MET LYS SEQRES 8 B 411 GLU ILE CYS SER SER ASN SER ILE ASP LYS ILE VAL ILE SEQRES 9 B 411 GLY ILE ASP SER PHE GLN GLY LEU TYR SER THR MET TYR SEQRES 10 B 411 ALA ILE MET ASN ASN LYS ILE VAL ALA LEU ALA ASN LYS SEQRES 11 B 411 GLU SER ILE VAL SER ALA GLY PHE PHE LEU LYS LYS LEU SEQRES 12 B 411 LEU ASN ILE HIS LYS ASN ALA LYS ILE ILE PRO VAL ASP SEQRES 13 B 411 SER GLU HIS SER ALA ILE PHE GLN CYS LEU ASP ASN ASN SEQRES 14 B 411 LYS VAL LEU LYS THR LYS CYS LEU GLN ASP ASN PHE SER SEQRES 15 B 411 LYS ILE ASN ASN ILE ASN LYS ILE PHE LEU CYS SER SER SEQRES 16 B 411 GLY GLY PRO PHE GLN ASN LEU THR MET ASP GLU LEU LYS SEQRES 17 B 411 ASN VAL THR SER GLU ASN ALA LEU LYS HIS PRO LYS TRP SEQRES 18 B 411 LYS MET GLY LYS LYS ILE THR ILE ASP SER ALA THR MET SEQRES 19 B 411 MET ASN LYS GLY LEU GLU VAL ILE GLU THR HIS PHE LEU SEQRES 20 B 411 PHE ASP VAL ASP TYR ASN ASP ILE GLU VAL ILE VAL HIS SEQRES 21 B 411 LYS GLU CYS ILE ILE HIS SER CYS VAL GLU PHE ILE ASP SEQRES 22 B 411 LYS SER VAL ILE SER GLN MET TYR TYR PRO ASP MET GLN SEQRES 23 B 411 ILE PRO ILE LEU TYR SER LEU THR TRP PRO ASP ARG ILE SEQRES 24 B 411 LYS THR ASN LEU LYS PRO LEU ASP LEU ALA GLN VAL SER SEQRES 25 B 411 THR LEU THR PHE HIS LYS PRO SER LEU GLU HIS PHE PRO SEQRES 26 B 411 CYS ILE LYS LEU ALA TYR GLN ALA GLY ILE LYS GLY ASN SEQRES 27 B 411 PHE TYR PRO THR VAL LEU ASN ALA SER ASN GLU ILE ALA SEQRES 28 B 411 ASN ASN LEU PHE LEU ASN ASN LYS ILE LYS TYR PHE ASP SEQRES 29 B 411 ILE SER SER ILE ILE SER GLN VAL LEU GLU SER PHE ASN SEQRES 30 B 411 SER GLN LYS VAL SER GLU ASN SER GLU ASP LEU MET LYS SEQRES 31 B 411 GLN ILE LEU GLN ILE HIS SER TRP ALA LYS ASP LYS ALA SEQRES 32 B 411 THR ASP ILE TYR ASN LYS HIS ASN HET NDP A 501 48 HET MN A 502 1 HET UW0 A 503 26 HET NDP B 501 48 HET MN B 502 1 HET UW0 B 503 26 HET CA B 504 1 HET CA B 505 1 HET CA B 506 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM UW0 [(1~{S})-4-OXIDANYLIDENE-4-[OXIDANYL(3-PHENYLPROPYL) HETNAM 2 UW0 AMINO]-1-PHENYL-BUTYL]PHOSPHONIC ACID HETNAM CA CALCIUM ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 MN 2(MN 2+) FORMUL 5 UW0 2(C19 H24 N O5 P) FORMUL 9 CA 3(CA 2+) FORMUL 12 HOH *625(H2 O) HELIX 1 AA1 GLY A 87 GLU A 104 1 18 HELIX 2 AA2 SER A 117 LEU A 129 1 13 HELIX 3 AA3 ASP A 137 SER A 139 5 3 HELIX 4 AA4 VAL A 140 LYS A 149 1 10 HELIX 5 AA5 GLY A 161 SER A 171 1 11 HELIX 6 AA6 GLN A 185 ASN A 196 1 12 HELIX 7 AA7 ASN A 204 HIS A 222 1 19 HELIX 8 AA8 ASP A 231 CYS A 240 1 10 HELIX 9 AA9 ASP A 242 LEU A 247 1 6 HELIX 10 AB1 ASN A 255 ASN A 260 1 6 HELIX 11 AB2 THR A 278 ASN A 284 1 7 HELIX 12 AB3 THR A 286 LEU A 291 1 6 HELIX 13 AB4 GLY A 299 MET A 309 1 11 HELIX 14 AB5 MET A 309 ASP A 324 1 16 HELIX 15 AB6 ASP A 326 ASN A 328 5 3 HELIX 16 AB7 MET A 360 TRP A 370 1 11 HELIX 17 AB8 ASP A 382 SER A 387 1 6 HELIX 18 AB9 PHE A 399 GLY A 412 1 14 HELIX 19 AC1 PHE A 414 ASN A 432 1 19 HELIX 20 AC2 LYS A 436 PHE A 451 1 16 HELIX 21 AC3 ASN A 459 ASN A 486 1 28 HELIX 22 AC4 GLY B 87 ASN B 101 1 15 HELIX 23 AC5 SER B 117 LEU B 129 1 13 HELIX 24 AC6 ASP B 137 SER B 139 5 3 HELIX 25 AC7 VAL B 140 ASN B 150 1 11 HELIX 26 AC8 GLY B 161 SER B 170 1 10 HELIX 27 AC9 SER B 183 GLN B 185 5 3 HELIX 28 AD1 GLY B 186 ASN B 196 1 11 HELIX 29 AD2 ASN B 204 HIS B 222 1 19 HELIX 30 AD3 ASP B 231 LEU B 241 1 11 HELIX 31 AD4 ASP B 242 LEU B 247 1 6 HELIX 32 AD5 ASN B 255 ASN B 260 1 6 HELIX 33 AD6 THR B 278 ASN B 284 1 7 HELIX 34 AD7 THR B 286 LYS B 292 1 7 HELIX 35 AD8 GLY B 299 MET B 309 1 11 HELIX 36 AD9 MET B 309 ASP B 324 1 16 HELIX 37 AE1 ASP B 326 ASN B 328 5 3 HELIX 38 AE2 MET B 360 TRP B 370 1 11 HELIX 39 AE3 ASP B 382 SER B 387 1 6 HELIX 40 AE4 PHE B 399 GLY B 412 1 14 HELIX 41 AE5 PHE B 414 ASN B 432 1 19 HELIX 42 AE6 LYS B 436 PHE B 451 1 16 HELIX 43 AE7 ASN B 459 ASN B 486 1 28 SHEET 1 AA1 7 ILE A 157 CYS A 160 0 SHEET 2 AA1 7 TYR A 132 ILE A 135 1 N LEU A 133 O LEU A 159 SHEET 3 AA1 7 PHE A 107 VAL A 114 1 N LEU A 112 O CYS A 134 SHEET 4 AA1 7 ILE A 78 PHE A 83 1 N VAL A 80 O LYS A 110 SHEET 5 AA1 7 LYS A 176 ILE A 179 1 O VAL A 178 N PHE A 83 SHEET 6 AA1 7 ILE A 199 LEU A 202 1 O ILE A 199 N ILE A 177 SHEET 7 AA1 7 LYS A 226 PRO A 229 1 O LYS A 226 N VAL A 200 SHEET 1 AA2 8 ILE A 330 VAL A 334 0 SHEET 2 AA2 8 ILE A 262 SER A 269 1 N ILE A 265 O GLU A 331 SHEET 3 AA2 8 ILE A 340 PHE A 346 -1 O GLU A 345 N ASN A 263 SHEET 4 AA2 8 VAL A 351 MET A 355 -1 O ILE A 352 N VAL A 344 SHEET 5 AA2 8 VAL B 351 MET B 355 -1 O MET B 355 N VAL A 351 SHEET 6 AA2 8 ILE B 340 PHE B 346 -1 N VAL B 344 O ILE B 352 SHEET 7 AA2 8 ILE B 262 SER B 269 -1 N ASN B 263 O GLU B 345 SHEET 8 AA2 8 ILE B 330 VAL B 334 1 O GLU B 331 N ILE B 265 SHEET 1 AA3 2 THR A 388 THR A 390 0 SHEET 2 AA3 2 THR B 388 THR B 390 -1 O LEU B 389 N LEU A 389 SHEET 1 AA4 7 ILE B 157 CYS B 160 0 SHEET 2 AA4 7 TYR B 132 ILE B 135 1 N LEU B 133 O LEU B 159 SHEET 3 AA4 7 PHE B 107 VAL B 114 1 N LEU B 112 O CYS B 134 SHEET 4 AA4 7 ILE B 78 PHE B 83 1 N VAL B 80 O LYS B 110 SHEET 5 AA4 7 LYS B 176 ILE B 179 1 O VAL B 178 N PHE B 83 SHEET 6 AA4 7 ILE B 199 LEU B 202 1 O ILE B 199 N ILE B 177 SHEET 7 AA4 7 LYS B 226 PRO B 229 1 O LYS B 226 N VAL B 200 LINK OD1 ASP A 231 MN MN A 502 1555 1555 2.09 LINK OE1 GLU A 233 MN MN A 502 1555 1555 2.03 LINK OE2 GLU A 233 MN MN A 502 1555 1555 2.77 LINK OD1 ASP A 242 CA CA B 504 1555 1555 2.38 LINK OE2 GLU A 315 MN MN A 502 1555 1555 2.08 LINK MN MN A 502 O1 UW0 A 503 1555 1555 2.14 LINK MN MN A 502 O2 UW0 A 503 1555 1555 2.14 LINK O HOH A 699 CA CA B 504 1555 1555 2.49 LINK O HOH A 747 CA CA B 504 1555 1555 2.42 LINK O SER B 139 CA CA B 505 1555 1555 2.25 LINK OE1 GLU B 143 CA CA B 505 1555 1555 2.62 LINK OE2 GLU B 143 CA CA B 505 1555 1555 2.35 LINK OD1 ASP B 231 MN MN B 502 1555 1555 2.14 LINK OE1 GLU B 233 MN MN B 502 1555 1555 2.08 LINK O GLN B 239 CA CA B 504 1555 1555 2.27 LINK O LEU B 241 CA CA B 504 1555 1555 2.32 LINK OE2 GLU B 315 MN MN B 502 1555 1555 2.08 LINK OD2 ASP B 329 CA CA B 506 1555 1555 2.38 LINK OD1 ASN B 452 CA CA B 505 1555 2646 2.30 LINK MN MN B 502 O2 UW0 B 503 1555 1555 2.10 LINK MN MN B 502 O1 UW0 B 503 1555 1555 2.10 LINK CA CA B 504 O HOH B 740 1555 1555 2.51 LINK CA CA B 504 O HOH B 815 1555 1555 2.44 LINK CA CA B 505 O HOH B 670 1555 2656 2.30 LINK CA CA B 505 O HOH B 766 1555 2656 2.49 LINK CA CA B 506 O HOH B 714 1555 1555 2.54 LINK CA CA B 506 O HOH B 716 1555 1555 2.51 LINK CA CA B 506 O HOH B 735 1555 1555 2.43 LINK CA CA B 506 O HOH B 769 1555 1555 2.50 LINK CA CA B 506 O HOH B 801 1555 1555 2.41 LINK CA CA B 506 O HOH B 911 1555 1555 2.42 LINK CA CA B 506 O HOH B 927 1555 1555 2.34 CISPEP 1 TRP A 370 PRO A 371 0 3.89 CISPEP 2 TRP B 370 PRO B 371 0 9.58 CRYST1 51.518 78.201 111.144 90.00 92.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019411 0.000000 0.000893 0.00000 SCALE2 0.000000 0.012788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009007 0.00000