HEADER ISOMERASE 13-JUN-23 8JQ5 TITLE CRYSTAL STRUCTURE OF LACTOBACILLUS RHAMNOSUS L-RHAMNOSE ISOMERASE IN TITLE 2 COMPLEX WITH D-ALLULOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RHAMNOSE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTICASEIBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 GENE: RHAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOSHIDA,A.YOSHIHARA REVDAT 1 13-MAR-24 8JQ5 0 JRNL AUTH H.YOSHIDA,N.YAMAMOTO,L.H.KURAHARA,K.IZUMORI,A.YOSHIHARA JRNL TITL X-RAY STRUCTURE AND CHARACTERIZATION OF A PROBIOTIC JRNL TITL 2 LACTOBACILLUS RHAMNOSUS PROBIO-M9 L-RHAMNOSE ISOMERASE. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 108 249 2024 JRNL REFN ESSN 1432-0614 JRNL PMID 38430263 JRNL DOI 10.1007/S00253-024-13075-9 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 182641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 9442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13387 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 685 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 827 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 13989 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 12661 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 18955 ; 1.262 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 29437 ; 1.307 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1665 ; 6.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 788 ;33.131 ;22.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2352 ;14.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 80 ;18.686 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1777 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 15595 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 3037 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6678 ; 1.737 ; 2.116 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 6677 ; 1.716 ; 2.116 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8337 ; 2.301 ; 3.181 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 8338 ; 2.303 ; 3.182 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7311 ; 2.104 ; 2.396 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 7311 ; 2.104 ; 2.396 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 10619 ; 2.714 ; 3.488 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16023 ; 3.160 ;25.025 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15870 ; 3.109 ;24.916 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 26650 ; 4.796 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 3381 ; 6.31 ; 0.87 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 A (A**2): 3345 ; 4.70 ; 0.87 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 A (A**2): 3345 ; 6.31 ; 0.87 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 4 A (A**2): 3353 ; 6.13 ; 0.87 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 5 A (A**2): 3353 ; 4.81 ; 0.87 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 6 A (A**2): 3345 ; 6.68 ; 0.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300035011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 192191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 48.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG550MME, MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.94350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.41700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.41700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.94350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 LEU A 424 REMARK 465 VAL A 425 REMARK 465 HIS A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 465 LEU B 424 REMARK 465 VAL B 425 REMARK 465 HIS B 426 REMARK 465 GLY B 427 REMARK 465 SER B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 GLU C 56 REMARK 465 LEU C 57 REMARK 465 THR C 58 REMARK 465 GLY C 59 REMARK 465 GLY C 60 REMARK 465 ILE C 61 REMARK 465 GLY C 62 REMARK 465 VAL C 63 REMARK 465 ALA C 422 REMARK 465 LYS C 423 REMARK 465 LEU C 424 REMARK 465 VAL C 425 REMARK 465 HIS C 426 REMARK 465 GLY C 427 REMARK 465 SER C 428 REMARK 465 HIS C 429 REMARK 465 HIS C 430 REMARK 465 HIS C 431 REMARK 465 HIS C 432 REMARK 465 HIS C 433 REMARK 465 HIS C 434 REMARK 465 GLU D 56 REMARK 465 LEU D 57 REMARK 465 THR D 58 REMARK 465 GLY D 59 REMARK 465 GLY D 60 REMARK 465 ILE D 61 REMARK 465 GLY D 62 REMARK 465 VAL D 63 REMARK 465 HIS D 426 REMARK 465 GLY D 427 REMARK 465 SER D 428 REMARK 465 HIS D 429 REMARK 465 HIS D 430 REMARK 465 HIS D 431 REMARK 465 HIS D 432 REMARK 465 HIS D 433 REMARK 465 HIS D 434 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 66 51.18 -152.39 REMARK 500 THR A 148 -96.44 -131.98 REMARK 500 THR A 268 -2.00 75.79 REMARK 500 ARG A 294 -4.73 76.31 REMARK 500 LEU A 356 45.23 -91.63 REMARK 500 VAL A 416 -68.80 -131.70 REMARK 500 ASN B 66 22.50 -155.25 REMARK 500 THR B 148 -101.72 -136.49 REMARK 500 THR B 268 -0.46 77.27 REMARK 500 ARG B 294 -7.49 78.29 REMARK 500 LEU B 356 44.51 -90.25 REMARK 500 VAL B 416 -69.42 -128.47 REMARK 500 ASP C 45 24.02 -142.64 REMARK 500 PRO C 53 132.27 -36.01 REMARK 500 ASN C 54 88.64 25.37 REMARK 500 ASN C 66 42.05 -151.64 REMARK 500 THR C 148 -98.26 -135.90 REMARK 500 THR C 268 -4.18 76.82 REMARK 500 ARG C 294 -1.74 79.25 REMARK 500 LEU C 356 38.97 -92.68 REMARK 500 VAL C 416 -69.57 -129.22 REMARK 500 ASP D 45 25.75 -140.03 REMARK 500 ASN D 66 34.54 -149.51 REMARK 500 THR D 148 -99.09 -139.25 REMARK 500 ASP D 190 125.92 -39.58 REMARK 500 ILE D 236 47.56 -140.95 REMARK 500 THR D 268 -2.49 81.25 REMARK 500 ARG D 294 -2.19 76.60 REMARK 500 LEU D 356 44.15 -90.01 REMARK 500 VAL D 416 -69.57 -133.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 228 OE2 REMARK 620 2 ASP A 261 OD2 95.1 REMARK 620 3 HIS A 288 ND1 97.7 103.0 REMARK 620 4 ASP A 328 OD2 157.6 97.5 97.4 REMARK 620 5 PSJ A 503 O2 78.8 92.1 164.8 82.3 REMARK 620 6 PSJ A 503 O3 79.4 159.2 97.6 82.3 67.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 264 NE2 REMARK 620 2 ASP A 296 OD1 94.2 REMARK 620 3 ASP A 296 OD2 71.5 58.8 REMARK 620 4 ASP A 298 OD1 159.8 105.3 123.1 REMARK 620 5 HOH A 601 O 93.1 156.0 144.9 66.9 REMARK 620 6 HOH A 602 O 90.8 123.9 70.3 82.7 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 264 NE2 REMARK 620 2 ASP A 296 OD2 83.1 REMARK 620 3 PSJ A 503 O2 99.4 161.6 REMARK 620 4 PSJ A 503 O1 108.8 83.3 78.6 REMARK 620 5 HOH A 601 O 99.6 114.6 83.2 148.3 REMARK 620 6 HOH A 602 O 161.6 79.8 99.0 76.0 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 228 OE2 REMARK 620 2 ASP B 261 OD2 92.9 REMARK 620 3 HIS B 288 ND1 101.6 101.9 REMARK 620 4 ASP B 328 OD2 161.6 97.8 90.9 REMARK 620 5 PSJ B 503 O2 75.3 90.2 167.7 89.7 REMARK 620 6 PSJ B 503 O3 80.2 158.6 99.3 84.5 68.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 264 NE2 REMARK 620 2 ASP B 296 OD1 91.1 REMARK 620 3 ASP B 296 OD2 69.2 52.3 REMARK 620 4 ASP B 298 OD1 157.0 111.8 126.0 REMARK 620 5 HOH B 604 O 94.7 115.7 70.7 77.3 REMARK 620 6 HOH B 606 O 88.5 161.9 142.7 69.3 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 264 NE2 REMARK 620 2 ASP B 296 OD2 83.8 REMARK 620 3 PSJ B 503 O2 96.2 156.1 REMARK 620 4 PSJ B 503 O1 106.2 78.5 78.5 REMARK 620 5 HOH B 604 O 165.1 81.3 97.4 70.7 REMARK 620 6 HOH B 606 O 100.6 123.1 80.5 147.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 228 OE2 REMARK 620 2 ASP C 261 OD2 95.9 REMARK 620 3 HIS C 288 ND1 104.2 107.1 REMARK 620 4 ASP C 328 OD2 150.0 97.8 97.2 REMARK 620 5 PSJ C 503 O2 65.8 94.0 157.8 86.6 REMARK 620 6 PSJ C 503 O3 77.1 154.9 98.0 79.2 61.0 REMARK 620 7 PSV C 504 O2 78.5 94.0 158.2 74.0 12.7 61.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 264 NE2 REMARK 620 2 ASP C 296 OD2 75.6 REMARK 620 3 PSV C 504 O1 121.7 90.3 REMARK 620 4 PSV C 504 O2 110.0 161.6 71.7 REMARK 620 5 HOH C 602 O 151.8 80.1 72.1 97.6 REMARK 620 6 HOH C 605 O 93.8 120.6 138.9 77.3 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 264 NE2 REMARK 620 2 ASP C 296 OD1 93.5 REMARK 620 3 ASP C 296 OD2 71.0 57.3 REMARK 620 4 ASP C 298 OD1 160.9 102.5 126.7 REMARK 620 5 HOH C 602 O 101.4 117.0 70.7 80.8 REMARK 620 6 HOH C 605 O 92.4 162.6 140.1 69.3 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 228 OE2 REMARK 620 2 ASP D 261 OD2 92.5 REMARK 620 3 HIS D 288 ND1 102.4 103.5 REMARK 620 4 ASP D 328 OD2 155.7 99.4 95.4 REMARK 620 5 PSJ D 503 O2 70.7 92.1 163.4 87.7 REMARK 620 6 PSJ D 503 O3 76.8 156.1 99.7 84.0 64.2 REMARK 620 7 PSV D 504 O2 75.9 94.2 162.3 82.1 5.7 62.6 REMARK 620 8 PSV D 504 O3 82.4 155.0 101.5 77.8 63.1 6.4 60.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 264 NE2 REMARK 620 2 ASP D 296 OD1 95.1 REMARK 620 3 ASP D 296 OD2 71.8 56.5 REMARK 620 4 ASP D 298 OD1 159.2 103.4 126.6 REMARK 620 5 HOH D 602 O 94.7 111.4 63.2 87.3 REMARK 620 6 HOH D 617 O 85.6 163.6 138.2 73.9 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 264 NE2 REMARK 620 2 ASP D 296 OD2 77.5 REMARK 620 3 PSV D 504 O1 116.5 87.9 REMARK 620 4 PSV D 504 O2 103.6 162.1 75.5 REMARK 620 5 HOH D 602 O 143.2 68.1 75.9 113.2 REMARK 620 6 HOH D 617 O 92.3 119.0 145.1 78.9 93.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8JQ3 RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT LIGAND REMARK 900 RELATED ID: 8JQ4 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH L-RHAMNOSE DBREF 8JQ5 A 1 434 PDB 8JQ5 8JQ5 1 434 DBREF 8JQ5 B 1 434 PDB 8JQ5 8JQ5 1 434 DBREF 8JQ5 C 1 434 PDB 8JQ5 8JQ5 1 434 DBREF 8JQ5 D 1 434 PDB 8JQ5 8JQ5 1 434 SEQRES 1 A 434 MET VAL LYS PRO GLU GLU VAL ASP LYS ALA TYR GLU VAL SEQRES 2 A 434 ALA LYS GLN ARG TYR ALA GLU ILE GLY VAL ASP THR ASP SEQRES 3 A 434 ALA ALA MET LYS GLU LEU GLU LYS VAL PRO LEU SER VAL SEQRES 4 A 434 HIS CYS TRP GLN GLY ASP ASP ILE HIS GLY PHE LEU PHE SEQRES 5 A 434 PRO ASN GLN GLU LEU THR GLY GLY ILE GLY VAL SER GLY SEQRES 6 A 434 ASN TYR PRO GLY ILE ALA ARG THR PRO ASP GLU LEU ALA SEQRES 7 A 434 GLY ASP MET HIS GLU ALA LEU SER LEU ILE PRO GLY LYS SEQRES 8 A 434 HIS ARG VAL GLN LEU HIS ALA ILE TYR ALA VAL THR ASP SEQRES 9 A 434 LYS LYS ARG ASP LEU ASP THR LEU GLU PRO GLU ASP PHE SEQRES 10 A 434 ASP TYR TRP ILE ASP TRP ALA LYS GLN GLU GLY VAL GLY SEQRES 11 A 434 LEU ASP PHE ASN GLY THR PHE PHE SER HIS PRO MET VAL SEQRES 12 A 434 LYS ASP ASN MET THR VAL SER SER PRO ASP PRO LYS VAL SEQRES 13 A 434 ARG ASP PHE TRP ILE ARG HIS GLY LYS ILE SER ARG GLU SEQRES 14 A 434 ILE SER ASN TYR ILE GLY GLU LYS LEU GLY SER GLN VAL SEQRES 15 A 434 VAL ASN ASN PHE TRP LEU PRO ASP GLY PHE LYS ASP ASN SEQRES 16 A 434 PRO ILE ASP LYS LYS THR PRO ARG LEU ARG LEU LEU LYS SEQRES 17 A 434 ALA LEU ASP GLU ILE ILE LYS ASP PRO LEU PRO GLU LYS SEQRES 18 A 434 ASN THR ILE GLU SER PHE GLU GLY LYS LEU PHE GLY THR SEQRES 19 A 434 GLY ILE GLU SER TYR THR THR GLY SER HIS GLU PHE TYR SEQRES 20 A 434 GLN ASN TYR ALA ILE SER ARG ASN LYS LEU TRP THR ILE SEQRES 21 A 434 ASP ALA GLY HIS PHE HIS PRO THR GLU ASP VAL SER ASP SEQRES 22 A 434 LYS PHE SER ALA PHE PHE PRO PHE GLY LYS GLY LEU PHE SEQRES 23 A 434 MET HIS VAL SER ARG PRO VAL ARG TRP ASP SER ASP HIS SEQRES 24 A 434 VAL VAL ILE MET ASP ASP ALA LEU ILE ARG ILE THR ARG SEQRES 25 A 434 SER LEU VAL ARG ASP GLY TYR LEU ASP ARG THR HIS ILE SEQRES 26 A 434 GLY LEU ASP PHE PHE ASP ALA THR ILE ASN ARG VAL ALA SEQRES 27 A 434 ALA TRP VAL VAL GLY ALA ARG ALA THR GLN LYS SER LEU SEQRES 28 A 434 LEU GLN ALA MET LEU ALA PRO ILE ASP GLN LEU LYS LYS SEQRES 29 A 434 ASP GLU LEU ASN ALA ASP PHE THR THR ARG LEU ILE GLU SEQRES 30 A 434 THR GLU GLU LEU LYS SER PHE PRO PHE GLY ALA VAL TRP SEQRES 31 A 434 ASP LYS PHE CYS GLN ASP HIS ASN THR PRO VAL GLY PHE SEQRES 32 A 434 ASP TRP MET ASN ASN ILE HIS GLN TYR GLU LYS ASP VAL SEQRES 33 A 434 GLN PHE LYS ARG ASP ALA LYS LEU VAL HIS GLY SER HIS SEQRES 34 A 434 HIS HIS HIS HIS HIS SEQRES 1 B 434 MET VAL LYS PRO GLU GLU VAL ASP LYS ALA TYR GLU VAL SEQRES 2 B 434 ALA LYS GLN ARG TYR ALA GLU ILE GLY VAL ASP THR ASP SEQRES 3 B 434 ALA ALA MET LYS GLU LEU GLU LYS VAL PRO LEU SER VAL SEQRES 4 B 434 HIS CYS TRP GLN GLY ASP ASP ILE HIS GLY PHE LEU PHE SEQRES 5 B 434 PRO ASN GLN GLU LEU THR GLY GLY ILE GLY VAL SER GLY SEQRES 6 B 434 ASN TYR PRO GLY ILE ALA ARG THR PRO ASP GLU LEU ALA SEQRES 7 B 434 GLY ASP MET HIS GLU ALA LEU SER LEU ILE PRO GLY LYS SEQRES 8 B 434 HIS ARG VAL GLN LEU HIS ALA ILE TYR ALA VAL THR ASP SEQRES 9 B 434 LYS LYS ARG ASP LEU ASP THR LEU GLU PRO GLU ASP PHE SEQRES 10 B 434 ASP TYR TRP ILE ASP TRP ALA LYS GLN GLU GLY VAL GLY SEQRES 11 B 434 LEU ASP PHE ASN GLY THR PHE PHE SER HIS PRO MET VAL SEQRES 12 B 434 LYS ASP ASN MET THR VAL SER SER PRO ASP PRO LYS VAL SEQRES 13 B 434 ARG ASP PHE TRP ILE ARG HIS GLY LYS ILE SER ARG GLU SEQRES 14 B 434 ILE SER ASN TYR ILE GLY GLU LYS LEU GLY SER GLN VAL SEQRES 15 B 434 VAL ASN ASN PHE TRP LEU PRO ASP GLY PHE LYS ASP ASN SEQRES 16 B 434 PRO ILE ASP LYS LYS THR PRO ARG LEU ARG LEU LEU LYS SEQRES 17 B 434 ALA LEU ASP GLU ILE ILE LYS ASP PRO LEU PRO GLU LYS SEQRES 18 B 434 ASN THR ILE GLU SER PHE GLU GLY LYS LEU PHE GLY THR SEQRES 19 B 434 GLY ILE GLU SER TYR THR THR GLY SER HIS GLU PHE TYR SEQRES 20 B 434 GLN ASN TYR ALA ILE SER ARG ASN LYS LEU TRP THR ILE SEQRES 21 B 434 ASP ALA GLY HIS PHE HIS PRO THR GLU ASP VAL SER ASP SEQRES 22 B 434 LYS PHE SER ALA PHE PHE PRO PHE GLY LYS GLY LEU PHE SEQRES 23 B 434 MET HIS VAL SER ARG PRO VAL ARG TRP ASP SER ASP HIS SEQRES 24 B 434 VAL VAL ILE MET ASP ASP ALA LEU ILE ARG ILE THR ARG SEQRES 25 B 434 SER LEU VAL ARG ASP GLY TYR LEU ASP ARG THR HIS ILE SEQRES 26 B 434 GLY LEU ASP PHE PHE ASP ALA THR ILE ASN ARG VAL ALA SEQRES 27 B 434 ALA TRP VAL VAL GLY ALA ARG ALA THR GLN LYS SER LEU SEQRES 28 B 434 LEU GLN ALA MET LEU ALA PRO ILE ASP GLN LEU LYS LYS SEQRES 29 B 434 ASP GLU LEU ASN ALA ASP PHE THR THR ARG LEU ILE GLU SEQRES 30 B 434 THR GLU GLU LEU LYS SER PHE PRO PHE GLY ALA VAL TRP SEQRES 31 B 434 ASP LYS PHE CYS GLN ASP HIS ASN THR PRO VAL GLY PHE SEQRES 32 B 434 ASP TRP MET ASN ASN ILE HIS GLN TYR GLU LYS ASP VAL SEQRES 33 B 434 GLN PHE LYS ARG ASP ALA LYS LEU VAL HIS GLY SER HIS SEQRES 34 B 434 HIS HIS HIS HIS HIS SEQRES 1 C 434 MET VAL LYS PRO GLU GLU VAL ASP LYS ALA TYR GLU VAL SEQRES 2 C 434 ALA LYS GLN ARG TYR ALA GLU ILE GLY VAL ASP THR ASP SEQRES 3 C 434 ALA ALA MET LYS GLU LEU GLU LYS VAL PRO LEU SER VAL SEQRES 4 C 434 HIS CYS TRP GLN GLY ASP ASP ILE HIS GLY PHE LEU PHE SEQRES 5 C 434 PRO ASN GLN GLU LEU THR GLY GLY ILE GLY VAL SER GLY SEQRES 6 C 434 ASN TYR PRO GLY ILE ALA ARG THR PRO ASP GLU LEU ALA SEQRES 7 C 434 GLY ASP MET HIS GLU ALA LEU SER LEU ILE PRO GLY LYS SEQRES 8 C 434 HIS ARG VAL GLN LEU HIS ALA ILE TYR ALA VAL THR ASP SEQRES 9 C 434 LYS LYS ARG ASP LEU ASP THR LEU GLU PRO GLU ASP PHE SEQRES 10 C 434 ASP TYR TRP ILE ASP TRP ALA LYS GLN GLU GLY VAL GLY SEQRES 11 C 434 LEU ASP PHE ASN GLY THR PHE PHE SER HIS PRO MET VAL SEQRES 12 C 434 LYS ASP ASN MET THR VAL SER SER PRO ASP PRO LYS VAL SEQRES 13 C 434 ARG ASP PHE TRP ILE ARG HIS GLY LYS ILE SER ARG GLU SEQRES 14 C 434 ILE SER ASN TYR ILE GLY GLU LYS LEU GLY SER GLN VAL SEQRES 15 C 434 VAL ASN ASN PHE TRP LEU PRO ASP GLY PHE LYS ASP ASN SEQRES 16 C 434 PRO ILE ASP LYS LYS THR PRO ARG LEU ARG LEU LEU LYS SEQRES 17 C 434 ALA LEU ASP GLU ILE ILE LYS ASP PRO LEU PRO GLU LYS SEQRES 18 C 434 ASN THR ILE GLU SER PHE GLU GLY LYS LEU PHE GLY THR SEQRES 19 C 434 GLY ILE GLU SER TYR THR THR GLY SER HIS GLU PHE TYR SEQRES 20 C 434 GLN ASN TYR ALA ILE SER ARG ASN LYS LEU TRP THR ILE SEQRES 21 C 434 ASP ALA GLY HIS PHE HIS PRO THR GLU ASP VAL SER ASP SEQRES 22 C 434 LYS PHE SER ALA PHE PHE PRO PHE GLY LYS GLY LEU PHE SEQRES 23 C 434 MET HIS VAL SER ARG PRO VAL ARG TRP ASP SER ASP HIS SEQRES 24 C 434 VAL VAL ILE MET ASP ASP ALA LEU ILE ARG ILE THR ARG SEQRES 25 C 434 SER LEU VAL ARG ASP GLY TYR LEU ASP ARG THR HIS ILE SEQRES 26 C 434 GLY LEU ASP PHE PHE ASP ALA THR ILE ASN ARG VAL ALA SEQRES 27 C 434 ALA TRP VAL VAL GLY ALA ARG ALA THR GLN LYS SER LEU SEQRES 28 C 434 LEU GLN ALA MET LEU ALA PRO ILE ASP GLN LEU LYS LYS SEQRES 29 C 434 ASP GLU LEU ASN ALA ASP PHE THR THR ARG LEU ILE GLU SEQRES 30 C 434 THR GLU GLU LEU LYS SER PHE PRO PHE GLY ALA VAL TRP SEQRES 31 C 434 ASP LYS PHE CYS GLN ASP HIS ASN THR PRO VAL GLY PHE SEQRES 32 C 434 ASP TRP MET ASN ASN ILE HIS GLN TYR GLU LYS ASP VAL SEQRES 33 C 434 GLN PHE LYS ARG ASP ALA LYS LEU VAL HIS GLY SER HIS SEQRES 34 C 434 HIS HIS HIS HIS HIS SEQRES 1 D 434 MET VAL LYS PRO GLU GLU VAL ASP LYS ALA TYR GLU VAL SEQRES 2 D 434 ALA LYS GLN ARG TYR ALA GLU ILE GLY VAL ASP THR ASP SEQRES 3 D 434 ALA ALA MET LYS GLU LEU GLU LYS VAL PRO LEU SER VAL SEQRES 4 D 434 HIS CYS TRP GLN GLY ASP ASP ILE HIS GLY PHE LEU PHE SEQRES 5 D 434 PRO ASN GLN GLU LEU THR GLY GLY ILE GLY VAL SER GLY SEQRES 6 D 434 ASN TYR PRO GLY ILE ALA ARG THR PRO ASP GLU LEU ALA SEQRES 7 D 434 GLY ASP MET HIS GLU ALA LEU SER LEU ILE PRO GLY LYS SEQRES 8 D 434 HIS ARG VAL GLN LEU HIS ALA ILE TYR ALA VAL THR ASP SEQRES 9 D 434 LYS LYS ARG ASP LEU ASP THR LEU GLU PRO GLU ASP PHE SEQRES 10 D 434 ASP TYR TRP ILE ASP TRP ALA LYS GLN GLU GLY VAL GLY SEQRES 11 D 434 LEU ASP PHE ASN GLY THR PHE PHE SER HIS PRO MET VAL SEQRES 12 D 434 LYS ASP ASN MET THR VAL SER SER PRO ASP PRO LYS VAL SEQRES 13 D 434 ARG ASP PHE TRP ILE ARG HIS GLY LYS ILE SER ARG GLU SEQRES 14 D 434 ILE SER ASN TYR ILE GLY GLU LYS LEU GLY SER GLN VAL SEQRES 15 D 434 VAL ASN ASN PHE TRP LEU PRO ASP GLY PHE LYS ASP ASN SEQRES 16 D 434 PRO ILE ASP LYS LYS THR PRO ARG LEU ARG LEU LEU LYS SEQRES 17 D 434 ALA LEU ASP GLU ILE ILE LYS ASP PRO LEU PRO GLU LYS SEQRES 18 D 434 ASN THR ILE GLU SER PHE GLU GLY LYS LEU PHE GLY THR SEQRES 19 D 434 GLY ILE GLU SER TYR THR THR GLY SER HIS GLU PHE TYR SEQRES 20 D 434 GLN ASN TYR ALA ILE SER ARG ASN LYS LEU TRP THR ILE SEQRES 21 D 434 ASP ALA GLY HIS PHE HIS PRO THR GLU ASP VAL SER ASP SEQRES 22 D 434 LYS PHE SER ALA PHE PHE PRO PHE GLY LYS GLY LEU PHE SEQRES 23 D 434 MET HIS VAL SER ARG PRO VAL ARG TRP ASP SER ASP HIS SEQRES 24 D 434 VAL VAL ILE MET ASP ASP ALA LEU ILE ARG ILE THR ARG SEQRES 25 D 434 SER LEU VAL ARG ASP GLY TYR LEU ASP ARG THR HIS ILE SEQRES 26 D 434 GLY LEU ASP PHE PHE ASP ALA THR ILE ASN ARG VAL ALA SEQRES 27 D 434 ALA TRP VAL VAL GLY ALA ARG ALA THR GLN LYS SER LEU SEQRES 28 D 434 LEU GLN ALA MET LEU ALA PRO ILE ASP GLN LEU LYS LYS SEQRES 29 D 434 ASP GLU LEU ASN ALA ASP PHE THR THR ARG LEU ILE GLU SEQRES 30 D 434 THR GLU GLU LEU LYS SER PHE PRO PHE GLY ALA VAL TRP SEQRES 31 D 434 ASP LYS PHE CYS GLN ASP HIS ASN THR PRO VAL GLY PHE SEQRES 32 D 434 ASP TRP MET ASN ASN ILE HIS GLN TYR GLU LYS ASP VAL SEQRES 33 D 434 GLN PHE LYS ARG ASP ALA LYS LEU VAL HIS GLY SER HIS SEQRES 34 D 434 HIS HIS HIS HIS HIS HET MN A 501 1 HET MN A 502 2 HET PSJ A 503 12 HET PSV A 504 12 HET MN B 501 1 HET MN B 502 2 HET PSJ B 503 12 HET MN C 501 1 HET MN C 502 2 HET PSJ C 503 12 HET PSV C 504 12 HET PSV C 505 12 HET MN D 501 1 HET MN D 502 2 HET PSJ D 503 12 HET PSV D 504 12 HETNAM MN MANGANESE (II) ION HETNAM PSJ D-PSICOSE HETNAM PSV ALPHA-D-PSICOFURANOSE HETSYN PSV ALPHA-D-PSICOSE; D-PSICOSE; PSICOSE FORMUL 5 MN 8(MN 2+) FORMUL 7 PSJ 4(C6 H12 O6) FORMUL 8 PSV 4(C6 H12 O6) FORMUL 21 HOH *827(H2 O) HELIX 1 AA1 LYS A 3 GLU A 20 1 18 HELIX 2 AA2 ASP A 24 GLU A 33 1 10 HELIX 3 AA3 TRP A 42 ASP A 45 5 4 HELIX 4 AA4 THR A 73 SER A 86 1 14 HELIX 5 AA5 ILE A 99 ALA A 101 5 3 HELIX 6 AA6 GLU A 113 ASP A 116 5 4 HELIX 7 AA7 PHE A 117 GLY A 128 1 12 HELIX 8 AA8 ASP A 153 GLY A 179 1 27 HELIX 9 AA9 LYS A 199 ILE A 214 1 16 HELIX 10 AB1 SER A 243 ASN A 255 1 13 HELIX 11 AB2 ASP A 270 ASP A 273 5 4 HELIX 12 AB3 LYS A 274 PHE A 279 1 6 HELIX 13 AB4 ASP A 304 ASP A 317 1 14 HELIX 14 AB5 TYR A 319 ASP A 321 5 3 HELIX 15 AB6 ASN A 335 LEU A 356 1 22 HELIX 16 AB7 PRO A 358 ASN A 368 1 11 HELIX 17 AB8 ASP A 370 LYS A 382 1 13 HELIX 18 AB9 PRO A 385 HIS A 397 1 13 HELIX 19 AC1 VAL A 401 PHE A 403 5 3 HELIX 20 AC2 ASP A 404 VAL A 416 1 13 HELIX 21 AC3 GLN A 417 ARG A 420 5 4 HELIX 22 AC4 LYS B 3 ILE B 21 1 19 HELIX 23 AC5 ASP B 24 GLU B 33 1 10 HELIX 24 AC6 TRP B 42 ASP B 45 5 4 HELIX 25 AC7 THR B 73 LEU B 87 1 15 HELIX 26 AC8 ILE B 99 ALA B 101 5 3 HELIX 27 AC9 GLU B 113 ASP B 116 5 4 HELIX 28 AD1 PHE B 117 GLY B 128 1 12 HELIX 29 AD2 ASP B 153 GLY B 179 1 27 HELIX 30 AD3 LYS B 199 ILE B 214 1 16 HELIX 31 AD4 SER B 243 ASN B 255 1 13 HELIX 32 AD5 ASP B 270 ASP B 273 5 4 HELIX 33 AD6 LYS B 274 PHE B 279 1 6 HELIX 34 AD7 ASP B 304 ASP B 317 1 14 HELIX 35 AD8 TYR B 319 ASP B 321 5 3 HELIX 36 AD9 ASN B 335 LEU B 356 1 22 HELIX 37 AE1 PRO B 358 ASN B 368 1 11 HELIX 38 AE2 ASP B 370 LYS B 382 1 13 HELIX 39 AE3 PRO B 385 HIS B 397 1 13 HELIX 40 AE4 VAL B 401 PHE B 403 5 3 HELIX 41 AE5 ASP B 404 VAL B 416 1 13 HELIX 42 AE6 GLN B 417 ARG B 420 5 4 HELIX 43 AE7 LYS C 3 GLU C 20 1 18 HELIX 44 AE8 ASP C 24 LYS C 34 1 11 HELIX 45 AE9 TRP C 42 ASP C 45 5 4 HELIX 46 AF1 THR C 73 LEU C 87 1 15 HELIX 47 AF2 ILE C 99 ALA C 101 5 3 HELIX 48 AF3 GLU C 113 ASP C 116 5 4 HELIX 49 AF4 PHE C 117 GLY C 128 1 12 HELIX 50 AF5 ASP C 153 GLY C 179 1 27 HELIX 51 AF6 LYS C 199 ILE C 214 1 16 HELIX 52 AF7 SER C 243 ASN C 255 1 13 HELIX 53 AF8 ASP C 270 ASP C 273 5 4 HELIX 54 AF9 LYS C 274 PHE C 279 1 6 HELIX 55 AG1 ASP C 304 ASP C 317 1 14 HELIX 56 AG2 TYR C 319 ASP C 321 5 3 HELIX 57 AG3 ASN C 335 LEU C 356 1 22 HELIX 58 AG4 PRO C 358 ASN C 368 1 11 HELIX 59 AG5 ASP C 370 LYS C 382 1 13 HELIX 60 AG6 PRO C 385 HIS C 397 1 13 HELIX 61 AG7 VAL C 401 PHE C 403 5 3 HELIX 62 AG8 ASP C 404 VAL C 416 1 13 HELIX 63 AG9 GLN C 417 ARG C 420 5 4 HELIX 64 AH1 LYS D 3 ILE D 21 1 19 HELIX 65 AH2 ASP D 24 LYS D 34 1 11 HELIX 66 AH3 TRP D 42 ASP D 45 5 4 HELIX 67 AH4 THR D 73 SER D 86 1 14 HELIX 68 AH5 ILE D 99 ALA D 101 5 3 HELIX 69 AH6 GLU D 113 ASP D 116 5 4 HELIX 70 AH7 PHE D 117 GLY D 128 1 12 HELIX 71 AH8 ASP D 153 GLY D 179 1 27 HELIX 72 AH9 LYS D 199 ILE D 214 1 16 HELIX 73 AI1 SER D 243 ASN D 255 1 13 HELIX 74 AI2 ASP D 270 ASP D 273 5 4 HELIX 75 AI3 LYS D 274 PHE D 279 1 6 HELIX 76 AI4 ASP D 304 ASP D 317 1 14 HELIX 77 AI5 TYR D 319 ASP D 321 5 3 HELIX 78 AI6 ASN D 335 LEU D 356 1 22 HELIX 79 AI7 PRO D 358 ASN D 368 1 11 HELIX 80 AI8 ASP D 370 LYS D 382 1 13 HELIX 81 AI9 PRO D 385 HIS D 397 1 13 HELIX 82 AJ1 VAL D 401 PHE D 403 5 3 HELIX 83 AJ2 ASP D 404 VAL D 416 1 13 HELIX 84 AJ3 LYS D 419 LYS D 423 5 5 SHEET 1 AA1 9 LEU A 37 HIS A 40 0 SHEET 2 AA1 9 ARG A 93 HIS A 97 1 O ARG A 93 N VAL A 39 SHEET 3 AA1 9 GLY A 130 ASN A 134 1 O ASP A 132 N LEU A 96 SHEET 4 AA1 9 VAL A 182 TRP A 187 1 O ASN A 185 N PHE A 133 SHEET 5 AA1 9 THR A 223 GLU A 228 1 O GLU A 228 N PHE A 186 SHEET 6 AA1 9 LEU A 257 ASP A 261 1 O THR A 259 N PHE A 227 SHEET 7 AA1 9 LEU A 285 VAL A 289 1 O HIS A 288 N ILE A 260 SHEET 8 AA1 9 THR A 323 LEU A 327 1 O HIS A 324 N MET A 287 SHEET 9 AA1 9 LEU A 37 HIS A 40 1 N SER A 38 O LEU A 327 SHEET 1 AA2 2 GLY A 191 PHE A 192 0 SHEET 2 AA2 2 TYR A 239 THR A 240 -1 O TYR A 239 N PHE A 192 SHEET 1 AA3 9 LEU B 37 HIS B 40 0 SHEET 2 AA3 9 ARG B 93 HIS B 97 1 O ARG B 93 N VAL B 39 SHEET 3 AA3 9 GLY B 130 ASN B 134 1 O ASP B 132 N VAL B 94 SHEET 4 AA3 9 VAL B 182 TRP B 187 1 O ASN B 185 N PHE B 133 SHEET 5 AA3 9 THR B 223 GLU B 228 1 O GLU B 228 N PHE B 186 SHEET 6 AA3 9 LEU B 257 ASP B 261 1 O THR B 259 N PHE B 227 SHEET 7 AA3 9 LEU B 285 VAL B 289 1 O HIS B 288 N ILE B 260 SHEET 8 AA3 9 THR B 323 LEU B 327 1 O GLY B 326 N MET B 287 SHEET 9 AA3 9 LEU B 37 HIS B 40 1 N SER B 38 O LEU B 327 SHEET 1 AA4 2 GLY B 191 PHE B 192 0 SHEET 2 AA4 2 TYR B 239 THR B 240 -1 O TYR B 239 N PHE B 192 SHEET 1 AA5 9 LEU C 37 HIS C 40 0 SHEET 2 AA5 9 ARG C 93 HIS C 97 1 O ARG C 93 N VAL C 39 SHEET 3 AA5 9 GLY C 130 ASN C 134 1 O ASP C 132 N LEU C 96 SHEET 4 AA5 9 VAL C 182 TRP C 187 1 O ASN C 185 N PHE C 133 SHEET 5 AA5 9 THR C 223 GLU C 228 1 O SER C 226 N PHE C 186 SHEET 6 AA5 9 LEU C 257 ASP C 261 1 O THR C 259 N PHE C 227 SHEET 7 AA5 9 LEU C 285 VAL C 289 1 O HIS C 288 N ILE C 260 SHEET 8 AA5 9 THR C 323 LEU C 327 1 O HIS C 324 N MET C 287 SHEET 9 AA5 9 LEU C 37 HIS C 40 1 N SER C 38 O LEU C 327 SHEET 1 AA6 2 GLY C 191 PHE C 192 0 SHEET 2 AA6 2 TYR C 239 THR C 240 -1 O TYR C 239 N PHE C 192 SHEET 1 AA7 9 LEU D 37 HIS D 40 0 SHEET 2 AA7 9 ARG D 93 HIS D 97 1 O ARG D 93 N VAL D 39 SHEET 3 AA7 9 GLY D 130 ASN D 134 1 O ASP D 132 N VAL D 94 SHEET 4 AA7 9 VAL D 182 TRP D 187 1 O ASN D 185 N PHE D 133 SHEET 5 AA7 9 THR D 223 GLU D 228 1 O GLU D 228 N PHE D 186 SHEET 6 AA7 9 LEU D 257 ASP D 261 1 O LEU D 257 N GLU D 225 SHEET 7 AA7 9 LEU D 285 VAL D 289 1 O HIS D 288 N ILE D 260 SHEET 8 AA7 9 THR D 323 LEU D 327 1 O GLY D 326 N MET D 287 SHEET 9 AA7 9 LEU D 37 HIS D 40 1 N SER D 38 O ILE D 325 SHEET 1 AA8 2 GLY D 191 PHE D 192 0 SHEET 2 AA8 2 TYR D 239 THR D 240 -1 O TYR D 239 N PHE D 192 LINK OE2 GLU A 228 MN MN A 501 1555 1555 2.27 LINK OD2 ASP A 261 MN MN A 501 1555 1555 2.24 LINK NE2 HIS A 264 MN A MN A 502 1555 1555 2.56 LINK NE2 HIS A 264 MN B MN A 502 1555 1555 1.83 LINK ND1 HIS A 288 MN MN A 501 1555 1555 2.53 LINK OD1 ASP A 296 MN A MN A 502 1555 1555 1.79 LINK OD2 ASP A 296 MN A MN A 502 1555 1555 2.53 LINK OD2 ASP A 296 MN B MN A 502 1555 1555 2.57 LINK OD1 ASP A 298 MN A MN A 502 1555 1555 2.48 LINK OD2 ASP A 328 MN MN A 501 1555 1555 2.24 LINK MN MN A 501 O2 PSJ A 503 1555 1555 2.48 LINK MN MN A 501 O3 PSJ A 503 1555 1555 2.54 LINK MN B MN A 502 O2 PSJ A 503 1555 1555 2.07 LINK MN B MN A 502 O1 PSJ A 503 1555 1555 2.18 LINK MN A MN A 502 O HOH A 601 1555 1555 1.84 LINK MN B MN A 502 O HOH A 601 1555 1555 2.38 LINK MN A MN A 502 O HOH A 602 1555 1555 2.43 LINK MN B MN A 502 O HOH A 602 1555 1555 1.78 LINK OE2 GLU B 228 MN MN B 501 1555 1555 2.20 LINK OD2 ASP B 261 MN MN B 501 1555 1555 2.23 LINK NE2 HIS B 264 MN A MN B 502 1555 1555 2.59 LINK NE2 HIS B 264 MN B MN B 502 1555 1555 1.76 LINK ND1 HIS B 288 MN MN B 501 1555 1555 2.43 LINK OD1 ASP B 296 MN A MN B 502 1555 1555 1.85 LINK OD2 ASP B 296 MN A MN B 502 1555 1555 2.78 LINK OD2 ASP B 296 MN B MN B 502 1555 1555 2.69 LINK OD1 ASP B 298 MN A MN B 502 1555 1555 2.49 LINK OD2 ASP B 328 MN MN B 501 1555 1555 2.09 LINK MN MN B 501 O2 PSJ B 503 1555 1555 2.43 LINK MN MN B 501 O3 PSJ B 503 1555 1555 2.52 LINK MN B MN B 502 O2 PSJ B 503 1555 1555 2.15 LINK MN B MN B 502 O1 PSJ B 503 1555 1555 2.09 LINK MN A MN B 502 O HOH B 604 1555 1555 2.79 LINK MN B MN B 502 O HOH B 604 1555 1555 2.23 LINK MN A MN B 502 O HOH B 606 1555 1555 1.83 LINK MN B MN B 502 O HOH B 606 1555 1555 2.28 LINK OE2 GLU C 228 MN MN C 501 1555 1555 2.22 LINK OD2 ASP C 261 MN MN C 501 1555 1555 2.19 LINK NE2 HIS C 264 MN B MN C 502 1555 1555 1.98 LINK NE2 HIS C 264 MN A MN C 502 1555 1555 2.34 LINK ND1 HIS C 288 MN MN C 501 1555 1555 2.40 LINK OD1 ASP C 296 MN A MN C 502 1555 1555 1.82 LINK OD2 ASP C 296 MN B MN C 502 1555 1555 2.63 LINK OD2 ASP C 296 MN A MN C 502 1555 1555 2.59 LINK OD1 ASP C 298 MN A MN C 502 1555 1555 2.45 LINK OD2 ASP C 328 MN MN C 501 1555 1555 2.27 LINK MN MN C 501 O2 APSJ C 503 1555 1555 2.70 LINK MN MN C 501 O3 APSJ C 503 1555 1555 2.58 LINK MN MN C 501 O2 BPSV C 504 1555 1555 2.74 LINK MN B MN C 502 O1 BPSV C 504 1555 1555 2.26 LINK MN B MN C 502 O2 BPSV C 504 1555 1555 2.17 LINK MN A MN C 502 O HOH C 602 1555 1555 2.61 LINK MN B MN C 502 O HOH C 602 1555 1555 1.98 LINK MN A MN C 502 O HOH C 605 1555 1555 1.91 LINK MN B MN C 502 O HOH C 605 1555 1555 2.24 LINK OE2 GLU D 228 MN MN D 501 1555 1555 2.31 LINK OD2 ASP D 261 MN MN D 501 1555 1555 2.23 LINK NE2 HIS D 264 MN A MN D 502 1555 1555 2.49 LINK NE2 HIS D 264 MN B MN D 502 1555 1555 1.96 LINK ND1 HIS D 288 MN MN D 501 1555 1555 2.56 LINK OD1 ASP D 296 MN A MN D 502 1555 1555 1.82 LINK OD2 ASP D 296 MN A MN D 502 1555 1555 2.64 LINK OD2 ASP D 296 MN B MN D 502 1555 1555 2.75 LINK OD1 ASP D 298 MN A MN D 502 1555 1555 2.26 LINK OD2 ASP D 328 MN MN D 501 1555 1555 2.23 LINK MN MN D 501 O2 APSJ D 503 1555 1555 2.59 LINK MN MN D 501 O3 APSJ D 503 1555 1555 2.44 LINK MN MN D 501 O2 BPSV D 504 1555 1555 2.56 LINK MN MN D 501 O3 BPSV D 504 1555 1555 2.62 LINK MN B MN D 502 O1 BPSV D 504 1555 1555 2.13 LINK MN B MN D 502 O2 BPSV D 504 1555 1555 2.14 LINK MN A MN D 502 O HOH D 602 1555 1555 2.53 LINK MN B MN D 502 O HOH D 602 1555 1555 1.93 LINK MN A MN D 502 O HOH D 617 1555 1555 2.05 LINK MN B MN D 502 O HOH D 617 1555 1555 2.33 CRYST1 89.887 139.445 146.834 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006810 0.00000