HEADER TRANSFERASE 20-JUN-23 8JSZ TITLE CRYSTAL STRUCTURE OF A URIDYLATE CYCLASE FROM ANABAENA SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADENYLATE/GUANYLATE CYCLASE DOMAIN-CONTAINING PROTEIN; COMPND 5 EC: 4.6.1.26; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NCBI: WP_066377497.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA SP. CA; SOURCE 3 ORGANISM_TAXID: 52271; SOURCE 4 STRAIN: ATCC 33047; SOURCE 5 GENE: ANPYCC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ADENYLATE/GUANYLATE CYCLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.WANG,C.-S.YANG,M.-H.HOU,Y.CHEN REVDAT 2 17-JUL-24 8JSZ 1 COMPND JRNL REVDAT 1 03-JUL-24 8JSZ 0 JRNL AUTH M.H.HOU,C.J.CHEN,C.S.YANG,Y.C.WANG,Y.CHEN JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF CYCLIC JRNL TITL 2 PYRIMIDINE-REGULATED ANTI-PHAGE SYSTEM. JRNL REF NAT COMMUN V. 15 5634 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38965224 JRNL DOI 10.1038/S41467-024-49861-2 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 25040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 47.100 REMARK 3 FREE R VALUE TEST SET COUNT : 22277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 1356 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 648 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : -0.26000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4282 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4094 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5786 ; 1.731 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9412 ; 2.225 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;30.829 ;23.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;13.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4796 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1016 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 4.749 ; 1.879 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2066 ; 4.699 ; 1.874 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 5.986 ; 2.759 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2573 ; 5.986 ; 2.763 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2214 ; 6.351 ; 2.305 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2215 ; 6.349 ; 2.307 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3215 ; 8.101 ; 3.224 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5174 ; 8.962 ;24.232 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5036 ; 8.982 ;23.541 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8JSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1300038778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 167 REMARK 465 VAL A 168 REMARK 465 ASN A 169 REMARK 465 GLN A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 465 GLN A 173 REMARK 465 ASP A 174 REMARK 465 PRO A 175 REMARK 465 TYR A 176 REMARK 465 THR A 224 REMARK 465 ASN A 225 REMARK 465 GLY A 226 REMARK 465 ILE A 227 REMARK 465 PRO A 228 REMARK 465 GLN A 229 REMARK 465 GLU A 230 REMARK 465 ASN A 231 REMARK 465 PHE A 232 REMARK 465 LYS A 278 REMARK 465 SER A 279 REMARK 465 LYS B 167 REMARK 465 VAL B 168 REMARK 465 ASN B 169 REMARK 465 GLN B 170 REMARK 465 ASN B 171 REMARK 465 ARG B 172 REMARK 465 GLN B 173 REMARK 465 ASP B 174 REMARK 465 PRO B 175 REMARK 465 TYR B 176 REMARK 465 THR B 224 REMARK 465 ASN B 225 REMARK 465 GLY B 226 REMARK 465 ILE B 227 REMARK 465 PRO B 228 REMARK 465 GLN B 229 REMARK 465 GLU B 230 REMARK 465 ASN B 231 REMARK 465 PHE B 232 REMARK 465 LYS B 278 REMARK 465 SER B 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 134 -56.76 -123.81 REMARK 500 VAL B 134 -57.03 -124.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 804 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 808 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 812 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 10.55 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 10.79 ANGSTROMS REMARK 525 HOH B 818 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 819 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 820 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 821 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B 823 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 824 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH B 829 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH B 830 DISTANCE = 8.56 ANGSTROMS REMARK 525 HOH B 831 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH B 832 DISTANCE = 10.55 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 11.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 221 SG REMARK 620 2 CYS A 223 SG 113.3 REMARK 620 3 CYS A 260 SG 107.7 107.5 REMARK 620 4 HIS A 263 ND1 114.6 101.4 112.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 CYS B 223 SG 111.2 REMARK 620 3 CYS B 260 SG 108.2 107.3 REMARK 620 4 HIS B 263 ND1 115.5 104.5 109.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8JSF RELATED DB: PDB REMARK 900 RELATED ID: 8JSJ RELATED DB: PDB REMARK 900 RELATED ID: 8JSK RELATED DB: PDB DBREF 8JSZ A 0 279 PDB 8JSZ 8JSZ 0 279 DBREF 8JSZ B 0 279 PDB 8JSZ 8JSZ 0 279 SEQRES 1 A 280 GLY MET LYS PRO ASN GLN PHE LEU ASN SER SER PHE SER SEQRES 2 A 280 ILE ILE ASN GLU GLN ILE GLU ILE TYR GLU ARG GLY VAL SEQRES 3 A 280 THR THR GLN LYS VAL ASN GLN ILE PRO LYS THR ASP ASP SEQRES 4 A 280 ILE ARG ILE GLN SER SER ASP LYS PRO TRP HIS TRP LEU SEQRES 5 A 280 GLU ILE PRO ASP LEU ILE CYS VAL PHE VAL ASP MET LYS SEQRES 6 A 280 GLY SER THR GLN LEU SER VAL THR ARG GLN ASP ARG THR SEQRES 7 A 280 MET ALA SER ALA TYR GLN LEU PHE THR ASN THR ALA ILE SEQRES 8 A 280 GLN ILE PHE HIS ASP PHE ASP THR PRO TYR ILE ASP ILE SEQRES 9 A 280 LYS GLY ASP GLY VAL PHE ALA LEU PHE ASN SER ASN GLN SEQRES 10 A 280 ILE TYR ARG ALA LEU ALA ALA THR VAL THR PHE LYS THR SEQRES 11 A 280 PHE VAL LYS GLU VAL PHE THR PRO LYS ILE LYS GLN LYS SEQRES 12 A 280 THR LYS GLY ILE ILE VAL GLY GLY HIS TYR GLY ILE ASP SEQRES 13 A 280 GLN LYS THR VAL LEU VAL ARG LYS ILE GLY LEU LYS VAL SEQRES 14 A 280 ASN GLN ASN ARG GLN ASP PRO TYR ARG TYR ASN GLU VAL SEQRES 15 A 280 TRP ALA GLY LYS PRO ILE ASN MET ALA ALA LYS LEU ALA SEQRES 16 A 280 SER LEU ALA ASN ILE ASP GLU LEU LEU VAL SER ASP ARG SEQRES 17 A 280 TYR PHE ASN ASN LEU LYS SER ASP PHE VAL LEU LYS SER SEQRES 18 A 280 CYS GLY CYS THR ASN GLY ILE PRO GLN GLU ASN PHE SER SEQRES 19 A 280 GLU LEU TRP LEU PRO LYS ASN VAL THR GLU GLU ASN LYS SEQRES 20 A 280 PHE ASP PHE ASN LYS ALA TYR SER LEU THR SER ALA TRP SEQRES 21 A 280 CYS PRO ILE HIS GLY ARG PHE TYR CYS GLN ASN ILE LEU SEQRES 22 A 280 ASN LEU ASP ASN ALA LYS SER SEQRES 1 B 280 GLY MET LYS PRO ASN GLN PHE LEU ASN SER SER PHE SER SEQRES 2 B 280 ILE ILE ASN GLU GLN ILE GLU ILE TYR GLU ARG GLY VAL SEQRES 3 B 280 THR THR GLN LYS VAL ASN GLN ILE PRO LYS THR ASP ASP SEQRES 4 B 280 ILE ARG ILE GLN SER SER ASP LYS PRO TRP HIS TRP LEU SEQRES 5 B 280 GLU ILE PRO ASP LEU ILE CYS VAL PHE VAL ASP MET LYS SEQRES 6 B 280 GLY SER THR GLN LEU SER VAL THR ARG GLN ASP ARG THR SEQRES 7 B 280 MET ALA SER ALA TYR GLN LEU PHE THR ASN THR ALA ILE SEQRES 8 B 280 GLN ILE PHE HIS ASP PHE ASP THR PRO TYR ILE ASP ILE SEQRES 9 B 280 LYS GLY ASP GLY VAL PHE ALA LEU PHE ASN SER ASN GLN SEQRES 10 B 280 ILE TYR ARG ALA LEU ALA ALA THR VAL THR PHE LYS THR SEQRES 11 B 280 PHE VAL LYS GLU VAL PHE THR PRO LYS ILE LYS GLN LYS SEQRES 12 B 280 THR LYS GLY ILE ILE VAL GLY GLY HIS TYR GLY ILE ASP SEQRES 13 B 280 GLN LYS THR VAL LEU VAL ARG LYS ILE GLY LEU LYS VAL SEQRES 14 B 280 ASN GLN ASN ARG GLN ASP PRO TYR ARG TYR ASN GLU VAL SEQRES 15 B 280 TRP ALA GLY LYS PRO ILE ASN MET ALA ALA LYS LEU ALA SEQRES 16 B 280 SER LEU ALA ASN ILE ASP GLU LEU LEU VAL SER ASP ARG SEQRES 17 B 280 TYR PHE ASN ASN LEU LYS SER ASP PHE VAL LEU LYS SER SEQRES 18 B 280 CYS GLY CYS THR ASN GLY ILE PRO GLN GLU ASN PHE SER SEQRES 19 B 280 GLU LEU TRP LEU PRO LYS ASN VAL THR GLU GLU ASN LYS SEQRES 20 B 280 PHE ASP PHE ASN LYS ALA TYR SER LEU THR SER ALA TRP SEQRES 21 B 280 CYS PRO ILE HIS GLY ARG PHE TYR CYS GLN ASN ILE LEU SEQRES 22 B 280 ASN LEU ASP ASN ALA LYS SER HET ZN A 400 1 HET CL A 401 1 HET ACT A 402 4 HET GOL A 403 6 HET ZN B 400 1 HET CL B 401 1 HET ACT B 402 4 HET GOL B 403 6 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *648(H2 O) HELIX 1 AA1 LYS A 2 PHE A 6 5 5 HELIX 2 AA2 LEU A 7 ARG A 23 1 17 HELIX 3 AA3 LYS A 35 ILE A 39 5 5 HELIX 4 AA4 ARG A 76 PHE A 96 1 21 HELIX 5 AA5 GLN A 116 VAL A 134 1 19 HELIX 6 AA6 VAL A 134 LYS A 144 1 11 HELIX 7 AA7 LYS A 185 ALA A 197 1 13 HELIX 8 AA8 ASP A 206 ASN A 210 1 5 HELIX 9 AA9 SER A 214 LYS A 219 1 6 HELIX 10 AB1 THR A 242 ASN A 245 5 4 HELIX 11 AB2 HIS A 263 LEU A 274 1 12 HELIX 12 AB3 ASP A 275 ALA A 277 5 3 HELIX 13 AB4 LYS B 2 PHE B 6 5 5 HELIX 14 AB5 LEU B 7 ARG B 23 1 17 HELIX 15 AB6 LYS B 35 ILE B 39 5 5 HELIX 16 AB7 ARG B 76 PHE B 96 1 21 HELIX 17 AB8 GLN B 116 VAL B 134 1 19 HELIX 18 AB9 VAL B 134 LYS B 144 1 11 HELIX 19 AC1 LYS B 185 ALA B 197 1 13 HELIX 20 AC2 ASP B 206 ASN B 210 1 5 HELIX 21 AC3 SER B 214 LYS B 219 1 6 HELIX 22 AC4 THR B 242 ASN B 245 5 4 HELIX 23 AC5 HIS B 263 LEU B 274 1 12 HELIX 24 AC6 ASP B 275 ALA B 277 5 3 SHEET 1 AA1 4 VAL A 25 LYS A 29 0 SHEET 2 AA1 4 TRP A 48 LYS A 64 1 O GLU A 52 N GLN A 28 SHEET 3 AA1 4 GLY A 149 ILE A 164 -1 O VAL A 159 N ILE A 53 SHEET 4 AA1 4 ASN A 179 GLY A 184 -1 O VAL A 181 N ARG A 162 SHEET 1 AA2 7 TYR A 100 LYS A 104 0 SHEET 2 AA2 7 GLY A 107 PHE A 112 -1 O PHE A 109 N ASP A 102 SHEET 3 AA2 7 TRP A 48 LYS A 64 -1 N VAL A 59 O ALA A 110 SHEET 4 AA2 7 GLY A 149 ILE A 164 -1 O VAL A 159 N ILE A 53 SHEET 5 AA2 7 GLU A 201 SER A 205 1 O LEU A 203 N TYR A 152 SHEET 6 AA2 7 LYS A 251 LEU A 255 -1 O LEU A 255 N LEU A 202 SHEET 7 AA2 7 TRP A 236 ASN A 240 -1 N LYS A 239 O ALA A 252 SHEET 1 AA3 4 VAL B 25 LYS B 29 0 SHEET 2 AA3 4 TRP B 48 LYS B 64 1 O GLU B 52 N GLN B 28 SHEET 3 AA3 4 GLY B 149 ILE B 164 -1 O VAL B 159 N ILE B 53 SHEET 4 AA3 4 ASN B 179 GLY B 184 -1 O VAL B 181 N ARG B 162 SHEET 1 AA4 7 TYR B 100 LYS B 104 0 SHEET 2 AA4 7 GLY B 107 PHE B 112 -1 O PHE B 109 N ASP B 102 SHEET 3 AA4 7 TRP B 48 LYS B 64 -1 N VAL B 59 O ALA B 110 SHEET 4 AA4 7 GLY B 149 ILE B 164 -1 O VAL B 159 N ILE B 53 SHEET 5 AA4 7 GLU B 201 SER B 205 1 O LEU B 203 N TYR B 152 SHEET 6 AA4 7 LYS B 251 LEU B 255 -1 O LEU B 255 N LEU B 202 SHEET 7 AA4 7 TRP B 236 ASN B 240 -1 N LEU B 237 O SER B 254 LINK SG CYS A 221 ZN ZN A 400 1555 1555 2.31 LINK SG CYS A 223 ZN ZN A 400 1555 1555 2.32 LINK SG CYS A 260 ZN ZN A 400 1555 1555 2.32 LINK ND1 HIS A 263 ZN ZN A 400 1555 1555 2.09 LINK SG CYS B 221 ZN ZN B 400 1555 1555 2.29 LINK SG CYS B 223 ZN ZN B 400 1555 1555 2.33 LINK SG CYS B 260 ZN ZN B 400 1555 1555 2.30 LINK ND1 HIS B 263 ZN ZN B 400 1555 1555 2.08 CRYST1 47.661 50.792 71.391 71.21 83.96 62.07 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020982 -0.011122 0.001300 0.00000 SCALE2 0.000000 0.022283 -0.007281 0.00000 SCALE3 0.000000 0.000000 0.014818 0.00000