HEADER SIGNALING PROTEIN 03-JUL-23 8JY9 TITLE CRYSTAL STRUCTURE OF INTRACELLULAR B30.2 DOMAIN OF VPBTN3 IN COMPLEX TITLE 2 WITH HMBPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUTYROPHYLIN 3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_COMMON: ALPACA; SOURCE 4 ORGANISM_TAXID: 30538; SOURCE 5 GENE: BTN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BUTYROPHILIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.YANG,S.M.YI,M.T.ZHANG,J.-W.HUANG,C.-C.CHEN,R.-T.GUO REVDAT 4 18-OCT-23 8JY9 1 JRNL REVDAT 3 11-OCT-23 8JY9 1 JRNL REVDAT 2 20-SEP-23 8JY9 1 JRNL REVDAT 1 13-SEP-23 8JY9 0 JRNL AUTH L.YUAN,X.MA,Y.YANG,Y.QU,X.LI,X.ZHU,W.MA,J.DUAN,J.XUE,H.YANG, JRNL AUTH 2 J.W.HUANG,S.YI,M.ZHANG,N.CAI,L.ZHANG,Q.DING,K.LAI,C.LIU, JRNL AUTH 3 L.ZHANG,X.LIU,Y.YAO,S.ZHOU,X.LI,P.SHEN,Q.CHANG,S.R.MALWAL, JRNL AUTH 4 Y.HE,W.LI,C.CHEN,C.C.CHEN,E.OLDFIELD,R.T.GUO,Y.ZHANG JRNL TITL PHOSPHOANTIGENS GLUE BUTYROPHILIN 3A1 AND 2A1 TO ACTIVATE V JRNL TITL 2 GAMMA 9V DELTA 2 T CELLS. JRNL REF NATURE V. 621 840 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37674084 JRNL DOI 10.1038/S41586-023-06525-3 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 33537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3247 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2847 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4435 ; 1.554 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6616 ; 1.337 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 7.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;32.321 ;21.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;13.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.403 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3630 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8JY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34138 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 37.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.07 REMARK 200 R MERGE (I) : 0.12280 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48120 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.96400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.29850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.73100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.29850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.96400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.73100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 316 REMARK 465 ALA A 317 REMARK 465 GLY A 318 REMARK 465 ALA A 319 REMARK 465 GLY A 320 REMARK 465 ALA A 321 REMARK 465 ARG A 322 REMARK 465 GLY A 323 REMARK 465 GLY B 316 REMARK 465 ALA B 317 REMARK 465 GLY B 318 REMARK 465 ALA B 319 REMARK 465 GLY B 320 REMARK 465 ALA B 321 REMARK 465 ARG B 322 REMARK 465 GLY B 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 906 O HOH A 916 1.86 REMARK 500 O HOH A 883 O HOH B 894 1.92 REMARK 500 SG CYS A 387 O HOH A 877 1.93 REMARK 500 O HOH B 862 O HOH B 870 2.12 REMARK 500 SG CYS B 511 O HOH B 866 2.14 REMARK 500 SG CYS A 511 O HOH A 876 2.15 REMARK 500 OD1 ASP A 437 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 858 O HOH B 838 3545 2.11 REMARK 500 O HOH A 815 O HOH A 862 4445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 373 50.32 -92.59 REMARK 500 TRP A 380 -64.46 -98.49 REMARK 500 LYS A 419 -63.26 -108.85 REMARK 500 TRP B 380 -69.03 -107.75 REMARK 500 TRP B 407 149.44 -176.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 903 DISTANCE = 5.85 ANGSTROMS DBREF1 8JY9 A 321 513 UNP A0A345DF50_VICPA DBREF2 8JY9 A A0A345DF50 321 513 DBREF1 8JY9 B 321 513 UNP A0A345DF50_VICPA DBREF2 8JY9 B A0A345DF50 321 513 SEQADV 8JY9 GLY A 316 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 ALA A 317 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 GLY A 318 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 ALA A 319 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 GLY A 320 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 GLY B 316 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 ALA B 317 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 GLY B 318 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 ALA B 319 UNP A0A345DF5 EXPRESSION TAG SEQADV 8JY9 GLY B 320 UNP A0A345DF5 EXPRESSION TAG SEQRES 1 A 198 GLY ALA GLY ALA GLY ALA ARG GLY GLU LYS SER GLN ALA SEQRES 2 A 198 TYR ALA GLU TRP LYS LYS ALA LEU PHE GLN PRO ALA ASP SEQRES 3 A 198 VAL ILE LEU ASP PRO ASN THR ALA ASN PRO ILE LEU LEU SEQRES 4 A 198 VAL SER ASP ASP GLN ARG SER LEU GLN ARG ALA ASP GLU SEQRES 5 A 198 ARG GLN ASN LEU PRO ASP ASN PRO GLU ARG PHE ASP TRP SEQRES 6 A 198 HIS TYR CYS VAL LEU GLY CYS LYS SER PHE THR SER GLY SEQRES 7 A 198 ARG HIS TYR TRP GLU VAL GLU VAL GLY ASP ARG LYS GLU SEQRES 8 A 198 TRP HIS ILE GLY VAL CYS GLN GLU ASN VAL GLU ARG LYS SEQRES 9 A 198 CYS TRP VAL LYS MET THR PRO GLU ASN GLY PHE TRP THR SEQRES 10 A 198 VAL GLY LEU THR ASP GLY SER LYS TYR ARG ALA LEU SER SEQRES 11 A 198 ASP PRO ARG THR LYS LEU THR VAL ALA ASN PRO PRO GLN SEQRES 12 A 198 ARG VAL GLY VAL PHE LEU ASP TYR GLU THR GLY GLU VAL SEQRES 13 A 198 SER PHE TYR ASN ALA MET ASP GLY SER HIS ILE TYR THR SEQRES 14 A 198 PHE PRO HIS THR PHE PHE SER GLY PRO LEU TRP PRO VAL SEQRES 15 A 198 PHE ARG ILE LEU THR LEU GLU PRO THR ALA LEU THR ILE SEQRES 16 A 198 CYS PRO ALA SEQRES 1 B 198 GLY ALA GLY ALA GLY ALA ARG GLY GLU LYS SER GLN ALA SEQRES 2 B 198 TYR ALA GLU TRP LYS LYS ALA LEU PHE GLN PRO ALA ASP SEQRES 3 B 198 VAL ILE LEU ASP PRO ASN THR ALA ASN PRO ILE LEU LEU SEQRES 4 B 198 VAL SER ASP ASP GLN ARG SER LEU GLN ARG ALA ASP GLU SEQRES 5 B 198 ARG GLN ASN LEU PRO ASP ASN PRO GLU ARG PHE ASP TRP SEQRES 6 B 198 HIS TYR CYS VAL LEU GLY CYS LYS SER PHE THR SER GLY SEQRES 7 B 198 ARG HIS TYR TRP GLU VAL GLU VAL GLY ASP ARG LYS GLU SEQRES 8 B 198 TRP HIS ILE GLY VAL CYS GLN GLU ASN VAL GLU ARG LYS SEQRES 9 B 198 CYS TRP VAL LYS MET THR PRO GLU ASN GLY PHE TRP THR SEQRES 10 B 198 VAL GLY LEU THR ASP GLY SER LYS TYR ARG ALA LEU SER SEQRES 11 B 198 ASP PRO ARG THR LYS LEU THR VAL ALA ASN PRO PRO GLN SEQRES 12 B 198 ARG VAL GLY VAL PHE LEU ASP TYR GLU THR GLY GLU VAL SEQRES 13 B 198 SER PHE TYR ASN ALA MET ASP GLY SER HIS ILE TYR THR SEQRES 14 B 198 PHE PRO HIS THR PHE PHE SER GLY PRO LEU TRP PRO VAL SEQRES 15 B 198 PHE ARG ILE LEU THR LEU GLU PRO THR ALA LEU THR ILE SEQRES 16 B 198 CYS PRO ALA HET SO4 A 601 5 HET H6P A 602 15 HET SO4 B 601 5 HET SO4 B 602 5 HET H6P B 603 15 HETNAM SO4 SULFATE ION HETNAM H6P (2E)-4-HYDROXY-3-METHYLBUT-2-EN-1-YL TRIHYDROGEN HETNAM 2 H6P DIPHOSPHATE FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 H6P 2(C5 H12 O8 P2) FORMUL 8 HOH *422(H2 O) HELIX 1 AA1 GLU A 324 PHE A 337 1 14 HELIX 2 AA2 THR A 425 ASN A 428 5 4 HELIX 3 AA3 LYS B 325 PHE B 337 1 13 HELIX 4 AA4 ASP B 345 ALA B 349 5 5 HELIX 5 AA5 THR B 425 ASN B 428 5 4 SHEET 1 AA1 5 GLN A 338 PRO A 339 0 SHEET 2 AA1 5 ARG A 394 GLU A 400 1 O ARG A 394 N GLN A 338 SHEET 3 AA1 5 LEU A 508 ILE A 510 -1 O THR A 509 N GLU A 400 SHEET 4 AA1 5 SER A 361 ARG A 364 -1 N LEU A 362 O LEU A 508 SHEET 5 AA1 5 LEU A 353 VAL A 355 -1 N LEU A 354 O GLN A 363 SHEET 1 AA2 5 GLN A 338 PRO A 339 0 SHEET 2 AA2 5 ARG A 394 GLU A 400 1 O ARG A 394 N GLN A 338 SHEET 3 AA2 5 ARG A 459 ASP A 465 -1 O VAL A 462 N TRP A 397 SHEET 4 AA2 5 GLU A 470 ASN A 475 -1 O TYR A 474 N GLY A 461 SHEET 5 AA2 5 HIS A 481 THR A 484 -1 O ILE A 482 N PHE A 473 SHEET 1 AA3 6 CYS A 383 LEU A 385 0 SHEET 2 AA3 6 LEU A 494 ARG A 499 -1 O PHE A 498 N VAL A 384 SHEET 3 AA3 6 TRP A 407 GLN A 413 -1 N CYS A 412 O TRP A 495 SHEET 4 AA3 6 PHE A 430 THR A 436 -1 O TRP A 431 N VAL A 411 SHEET 5 AA3 6 LYS A 440 ALA A 443 -1 O ARG A 442 N GLY A 434 SHEET 6 AA3 6 THR A 449 LYS A 450 -1 O THR A 449 N ALA A 443 SHEET 1 AA4 5 GLN B 338 PRO B 339 0 SHEET 2 AA4 5 ARG B 394 GLU B 400 1 O ARG B 394 N GLN B 338 SHEET 3 AA4 5 LEU B 508 ILE B 510 -1 O THR B 509 N GLU B 400 SHEET 4 AA4 5 SER B 361 ARG B 364 -1 N LEU B 362 O LEU B 508 SHEET 5 AA4 5 LEU B 353 VAL B 355 -1 N LEU B 354 O GLN B 363 SHEET 1 AA5 5 GLN B 338 PRO B 339 0 SHEET 2 AA5 5 ARG B 394 GLU B 400 1 O ARG B 394 N GLN B 338 SHEET 3 AA5 5 ARG B 459 ASP B 465 -1 O VAL B 462 N TRP B 397 SHEET 4 AA5 5 GLU B 470 ASN B 475 -1 O SER B 472 N PHE B 463 SHEET 5 AA5 5 HIS B 481 THR B 484 -1 O ILE B 482 N PHE B 473 SHEET 1 AA6 6 CYS B 383 LEU B 385 0 SHEET 2 AA6 6 LEU B 494 ARG B 499 -1 O PHE B 498 N VAL B 384 SHEET 3 AA6 6 TRP B 407 GLN B 413 -1 N CYS B 412 O TRP B 495 SHEET 4 AA6 6 PHE B 430 THR B 436 -1 O TRP B 431 N VAL B 411 SHEET 5 AA6 6 LYS B 440 ALA B 443 -1 O LYS B 440 N THR B 436 SHEET 6 AA6 6 THR B 449 LYS B 450 -1 O THR B 449 N ALA B 443 CISPEP 1 ASP A 446 PRO A 447 0 -3.69 CISPEP 2 ASP B 446 PRO B 447 0 -5.06 CRYST1 43.928 67.462 134.597 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007430 0.00000