data_8JYS # _entry.id 8JYS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8JYS pdb_00008jys 10.2210/pdb8jys/pdb WWPDB D_1300037298 ? ? EMDB EMD-36730 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8JYS _pdbx_database_status.recvd_initial_deposition_date 2023-07-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies' _pdbx_database_related.db_id EMD-36730 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email young@mail.sustech.edu.cn _pdbx_contact_author.name_first Yang _pdbx_contact_author.name_last Yang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6489-4459 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, Y.' 1 ? 'Zhang, C.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Exploration _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first 20230086 _citation.page_last ? _citation.title 'A novel nanobody broadly neutralizes SARS-CoV-2 via induction of spike trimer dimers conformation' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/EXP.20230086 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, Y.' 1 ? primary 'Zhang, J.' 2 ? primary 'Zhang, S.' 3 ? primary 'Zhang, C.' 4 ? primary 'Shen, C.' 5 ? primary 'Song, S.' 6 ? primary 'Wang, Y.' 7 ? primary 'Peng, Y.' 8 ? primary 'Gong, X.' 9 ? primary 'Dai, J.' 10 ? primary 'Xie, C.' 11 ? primary 'Khrustaleva, T.A.' 12 ? primary 'Khrustalev, V.V.' 13 ? primary 'Huo, Y.' 14 ? primary 'Lu, D.' 15 ? primary 'Yao, D.' 16 ? primary 'Zhao, J.' 17 ? primary 'Liu, Y.' 18 ? primary 'Lu, H.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'IBT-CoV144 nanobody' 15539.212 2 ? ? ? ? 2 polymer man 'Spike protein S1' 22169.053 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVESGGGPVQAGGSLRLSCTCSRCTFNWDGMGWFRQAPGKEREFVATISWSGQEPAYADSVKGRFTISRDKPKNTVY LQMTSLKSEDTAVYYCAAAQYTGASYSILRDQVGYDYWGQGTRVTVSAEPKTPKPQDGQAGQ ; ;QVQLVESGGGPVQAGGSLRLSCTCSRCTFNWDGMGWFRQAPGKEREFVATISWSGQEPAYADSVKGRFTISRDKPKNTVY LQMTSLKSEDTAVYYCAAAQYTGASYSILRDQVGYDYWGQGTRVTVSAEPKTPKPQDGQAGQ ; A,C ? 2 'polypeptide(L)' no no ;TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAP GQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPL RSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK ; ;TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAP GQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPL RSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK ; B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 PRO n 1 12 VAL n 1 13 GLN n 1 14 ALA n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 THR n 1 24 CYS n 1 25 SER n 1 26 ARG n 1 27 CYS n 1 28 THR n 1 29 PHE n 1 30 ASN n 1 31 TRP n 1 32 ASP n 1 33 GLY n 1 34 MET n 1 35 GLY n 1 36 TRP n 1 37 PHE n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLU n 1 45 ARG n 1 46 GLU n 1 47 PHE n 1 48 VAL n 1 49 ALA n 1 50 THR n 1 51 ILE n 1 52 SER n 1 53 TRP n 1 54 SER n 1 55 GLY n 1 56 GLN n 1 57 GLU n 1 58 PRO n 1 59 ALA n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 SER n 1 64 VAL n 1 65 LYS n 1 66 GLY n 1 67 ARG n 1 68 PHE n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 ARG n 1 73 ASP n 1 74 LYS n 1 75 PRO n 1 76 LYS n 1 77 ASN n 1 78 THR n 1 79 VAL n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 MET n 1 84 THR n 1 85 SER n 1 86 LEU n 1 87 LYS n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 GLN n 1 101 TYR n 1 102 THR n 1 103 GLY n 1 104 ALA n 1 105 SER n 1 106 TYR n 1 107 SER n 1 108 ILE n 1 109 LEU n 1 110 ARG n 1 111 ASP n 1 112 GLN n 1 113 VAL n 1 114 GLY n 1 115 TYR n 1 116 ASP n 1 117 TYR n 1 118 TRP n 1 119 GLY n 1 120 GLN n 1 121 GLY n 1 122 THR n 1 123 ARG n 1 124 VAL n 1 125 THR n 1 126 VAL n 1 127 SER n 1 128 ALA n 1 129 GLU n 1 130 PRO n 1 131 LYS n 1 132 THR n 1 133 PRO n 1 134 LYS n 1 135 PRO n 1 136 GLN n 1 137 ASP n 1 138 GLY n 1 139 GLN n 1 140 ALA n 1 141 GLY n 1 142 GLN n 2 1 THR n 2 2 ASN n 2 3 LEU n 2 4 CYS n 2 5 PRO n 2 6 PHE n 2 7 ASP n 2 8 GLU n 2 9 VAL n 2 10 PHE n 2 11 ASN n 2 12 ALA n 2 13 THR n 2 14 ARG n 2 15 PHE n 2 16 ALA n 2 17 SER n 2 18 VAL n 2 19 TYR n 2 20 ALA n 2 21 TRP n 2 22 ASN n 2 23 ARG n 2 24 LYS n 2 25 ARG n 2 26 ILE n 2 27 SER n 2 28 ASN n 2 29 CYS n 2 30 VAL n 2 31 ALA n 2 32 ASP n 2 33 TYR n 2 34 SER n 2 35 VAL n 2 36 LEU n 2 37 TYR n 2 38 ASN n 2 39 PHE n 2 40 ALA n 2 41 PRO n 2 42 PHE n 2 43 PHE n 2 44 ALA n 2 45 PHE n 2 46 LYS n 2 47 CYS n 2 48 TYR n 2 49 GLY n 2 50 VAL n 2 51 SER n 2 52 PRO n 2 53 THR n 2 54 LYS n 2 55 LEU n 2 56 ASN n 2 57 ASP n 2 58 LEU n 2 59 CYS n 2 60 PHE n 2 61 THR n 2 62 ASN n 2 63 VAL n 2 64 TYR n 2 65 ALA n 2 66 ASP n 2 67 SER n 2 68 PHE n 2 69 VAL n 2 70 ILE n 2 71 ARG n 2 72 GLY n 2 73 ASN n 2 74 GLU n 2 75 VAL n 2 76 SER n 2 77 GLN n 2 78 ILE n 2 79 ALA n 2 80 PRO n 2 81 GLY n 2 82 GLN n 2 83 THR n 2 84 GLY n 2 85 ASN n 2 86 ILE n 2 87 ALA n 2 88 ASP n 2 89 TYR n 2 90 ASN n 2 91 TYR n 2 92 LYS n 2 93 LEU n 2 94 PRO n 2 95 ASP n 2 96 ASP n 2 97 PHE n 2 98 THR n 2 99 GLY n 2 100 CYS n 2 101 VAL n 2 102 ILE n 2 103 ALA n 2 104 TRP n 2 105 ASN n 2 106 SER n 2 107 ASN n 2 108 LYS n 2 109 LEU n 2 110 ASP n 2 111 SER n 2 112 LYS n 2 113 VAL n 2 114 GLY n 2 115 GLY n 2 116 ASN n 2 117 TYR n 2 118 ASN n 2 119 TYR n 2 120 LEU n 2 121 TYR n 2 122 ARG n 2 123 LEU n 2 124 PHE n 2 125 ARG n 2 126 LYS n 2 127 SER n 2 128 ASN n 2 129 LEU n 2 130 LYS n 2 131 PRO n 2 132 PHE n 2 133 GLU n 2 134 ARG n 2 135 ASP n 2 136 ILE n 2 137 SER n 2 138 THR n 2 139 GLU n 2 140 ILE n 2 141 TYR n 2 142 GLN n 2 143 ALA n 2 144 GLY n 2 145 ASN n 2 146 LYS n 2 147 PRO n 2 148 CYS n 2 149 ASN n 2 150 GLY n 2 151 VAL n 2 152 ALA n 2 153 GLY n 2 154 PHE n 2 155 ASN n 2 156 CYS n 2 157 TYR n 2 158 PHE n 2 159 PRO n 2 160 LEU n 2 161 ARG n 2 162 SER n 2 163 TYR n 2 164 GLY n 2 165 PHE n 2 166 ARG n 2 167 PRO n 2 168 THR n 2 169 TYR n 2 170 GLY n 2 171 VAL n 2 172 GLY n 2 173 HIS n 2 174 GLN n 2 175 PRO n 2 176 TYR n 2 177 ARG n 2 178 VAL n 2 179 VAL n 2 180 VAL n 2 181 LEU n 2 182 SER n 2 183 PHE n 2 184 GLU n 2 185 LEU n 2 186 LEU n 2 187 HIS n 2 188 ALA n 2 189 PRO n 2 190 ALA n 2 191 THR n 2 192 VAL n 2 193 CYS n 2 194 GLY n 2 195 PRO n 2 196 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 142 ? ? ? ? ? ? ? ? ? 'Camelus bactrianus' 9837 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 196 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 SER 7 7 ? ? ? A . n A 1 8 GLY 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 GLY 10 10 ? ? ? A . n A 1 11 PRO 11 11 ? ? ? A . n A 1 12 VAL 12 12 ? ? ? A . n A 1 13 GLN 13 13 ? ? ? A . n A 1 14 ALA 14 14 ? ? ? A . n A 1 15 GLY 15 15 ? ? ? A . n A 1 16 GLY 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 LEU 18 18 ? ? ? A . n A 1 19 ARG 19 19 ? ? ? A . n A 1 20 LEU 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 CYS 22 22 ? ? ? A . n A 1 23 THR 23 23 ? ? ? A . n A 1 24 CYS 24 24 ? ? ? A . n A 1 25 SER 25 25 ? ? ? A . n A 1 26 ARG 26 26 ? ? ? A . n A 1 27 CYS 27 27 ? ? ? A . n A 1 28 THR 28 28 ? ? ? A . n A 1 29 PHE 29 29 ? ? ? A . n A 1 30 ASN 30 30 ? ? ? A . n A 1 31 TRP 31 31 ? ? ? A . n A 1 32 ASP 32 32 ? ? ? A . n A 1 33 GLY 33 33 ? ? ? A . n A 1 34 MET 34 34 ? ? ? A . n A 1 35 GLY 35 35 ? ? ? A . n A 1 36 TRP 36 36 ? ? ? A . n A 1 37 PHE 37 37 ? ? ? A . n A 1 38 ARG 38 38 ? ? ? A . n A 1 39 GLN 39 39 ? ? ? A . n A 1 40 ALA 40 40 ? ? ? A . n A 1 41 PRO 41 41 ? ? ? A . n A 1 42 GLY 42 42 ? ? ? A . n A 1 43 LYS 43 43 ? ? ? A . n A 1 44 GLU 44 44 ? ? ? A . n A 1 45 ARG 45 45 ? ? ? A . n A 1 46 GLU 46 46 ? ? ? A . n A 1 47 PHE 47 47 ? ? ? A . n A 1 48 VAL 48 48 ? ? ? A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 SER 63 63 ? ? ? A . n A 1 64 VAL 64 64 ? ? ? A . n A 1 65 LYS 65 65 ? ? ? A . n A 1 66 GLY 66 66 ? ? ? A . n A 1 67 ARG 67 67 ? ? ? A . n A 1 68 PHE 68 68 ? ? ? A . n A 1 69 THR 69 69 ? ? ? A . n A 1 70 ILE 70 70 ? ? ? A . n A 1 71 SER 71 71 ? ? ? A . n A 1 72 ARG 72 72 ? ? ? A . n A 1 73 ASP 73 73 ? ? ? A . n A 1 74 LYS 74 74 ? ? ? A . n A 1 75 PRO 75 75 ? ? ? A . n A 1 76 LYS 76 76 ? ? ? A . n A 1 77 ASN 77 77 ? ? ? A . n A 1 78 THR 78 78 ? ? ? A . n A 1 79 VAL 79 79 ? ? ? A . n A 1 80 TYR 80 80 ? ? ? A . n A 1 81 LEU 81 81 ? ? ? A . n A 1 82 GLN 82 82 ? ? ? A . n A 1 83 MET 83 83 ? ? ? A . n A 1 84 THR 84 84 ? ? ? A . n A 1 85 SER 85 85 ? ? ? A . n A 1 86 LEU 86 86 ? ? ? A . n A 1 87 LYS 87 87 ? ? ? A . n A 1 88 SER 88 88 ? ? ? A . n A 1 89 GLU 89 89 ? ? ? A . n A 1 90 ASP 90 90 ? ? ? A . n A 1 91 THR 91 91 ? ? ? A . n A 1 92 ALA 92 92 ? ? ? A . n A 1 93 VAL 93 93 ? ? ? A . n A 1 94 TYR 94 94 ? ? ? A . n A 1 95 TYR 95 95 ? ? ? A . n A 1 96 CYS 96 96 ? ? ? A . n A 1 97 ALA 97 97 ? ? ? A . n A 1 98 ALA 98 98 ? ? ? A . n A 1 99 ALA 99 99 ? ? ? A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 TYR 117 117 ? ? ? A . n A 1 118 TRP 118 118 ? ? ? A . n A 1 119 GLY 119 119 ? ? ? A . n A 1 120 GLN 120 120 ? ? ? A . n A 1 121 GLY 121 121 ? ? ? A . n A 1 122 THR 122 122 ? ? ? A . n A 1 123 ARG 123 123 ? ? ? A . n A 1 124 VAL 124 124 ? ? ? A . n A 1 125 THR 125 125 ? ? ? A . n A 1 126 VAL 126 126 ? ? ? A . n A 1 127 SER 127 127 ? ? ? A . n A 1 128 ALA 128 128 ? ? ? A . n A 1 129 GLU 129 129 ? ? ? A . n A 1 130 PRO 130 130 ? ? ? A . n A 1 131 LYS 131 131 ? ? ? A . n A 1 132 THR 132 132 ? ? ? A . n A 1 133 PRO 133 133 ? ? ? A . n A 1 134 LYS 134 134 ? ? ? A . n A 1 135 PRO 135 135 ? ? ? A . n A 1 136 GLN 136 136 ? ? ? A . n A 1 137 ASP 137 137 ? ? ? A . n A 1 138 GLY 138 138 ? ? ? A . n A 1 139 GLN 139 139 ? ? ? A . n A 1 140 ALA 140 140 ? ? ? A . n A 1 141 GLY 141 141 ? ? ? A . n A 1 142 GLN 142 142 ? ? ? A . n B 2 1 THR 1 333 333 THR THR B . n B 2 2 ASN 2 334 334 ASN ASN B . n B 2 3 LEU 3 335 335 LEU LEU B . n B 2 4 CYS 4 336 336 CYS CYS B . n B 2 5 PRO 5 337 337 PRO PRO B . n B 2 6 PHE 6 338 338 PHE PHE B . n B 2 7 ASP 7 339 339 ASP ASP B . n B 2 8 GLU 8 340 340 GLU GLU B . n B 2 9 VAL 9 341 341 VAL VAL B . n B 2 10 PHE 10 342 342 PHE PHE B . n B 2 11 ASN 11 343 343 ASN ASN B . n B 2 12 ALA 12 344 344 ALA ALA B . n B 2 13 THR 13 345 345 THR THR B . n B 2 14 ARG 14 346 346 ARG ARG B . n B 2 15 PHE 15 347 347 PHE PHE B . n B 2 16 ALA 16 348 348 ALA ALA B . n B 2 17 SER 17 349 349 SER SER B . n B 2 18 VAL 18 350 350 VAL VAL B . n B 2 19 TYR 19 351 351 TYR TYR B . n B 2 20 ALA 20 352 352 ALA ALA B . n B 2 21 TRP 21 353 353 TRP TRP B . n B 2 22 ASN 22 354 354 ASN ASN B . n B 2 23 ARG 23 355 355 ARG ARG B . n B 2 24 LYS 24 356 356 LYS LYS B . n B 2 25 ARG 25 357 357 ARG ARG B . n B 2 26 ILE 26 358 358 ILE ILE B . n B 2 27 SER 27 359 359 SER SER B . n B 2 28 ASN 28 360 360 ASN ASN B . n B 2 29 CYS 29 361 361 CYS CYS B . n B 2 30 VAL 30 362 362 VAL VAL B . n B 2 31 ALA 31 363 363 ALA ALA B . n B 2 32 ASP 32 364 364 ASP ASP B . n B 2 33 TYR 33 365 365 TYR TYR B . n B 2 34 SER 34 366 366 SER SER B . n B 2 35 VAL 35 367 367 VAL VAL B . n B 2 36 LEU 36 368 368 LEU LEU B . n B 2 37 TYR 37 369 369 TYR TYR B . n B 2 38 ASN 38 370 370 ASN ASN B . n B 2 39 PHE 39 371 371 PHE PHE B . n B 2 40 ALA 40 372 372 ALA ALA B . n B 2 41 PRO 41 373 373 PRO PRO B . n B 2 42 PHE 42 374 374 PHE PHE B . n B 2 43 PHE 43 375 375 PHE PHE B . n B 2 44 ALA 44 376 376 ALA ALA B . n B 2 45 PHE 45 377 377 PHE PHE B . n B 2 46 LYS 46 378 378 LYS LYS B . n B 2 47 CYS 47 379 379 CYS CYS B . n B 2 48 TYR 48 380 380 TYR TYR B . n B 2 49 GLY 49 381 381 GLY GLY B . n B 2 50 VAL 50 382 382 VAL VAL B . n B 2 51 SER 51 383 383 SER SER B . n B 2 52 PRO 52 384 384 PRO PRO B . n B 2 53 THR 53 385 385 THR THR B . n B 2 54 LYS 54 386 386 LYS LYS B . n B 2 55 LEU 55 387 387 LEU LEU B . n B 2 56 ASN 56 388 388 ASN ASN B . n B 2 57 ASP 57 389 389 ASP ASP B . n B 2 58 LEU 58 390 390 LEU LEU B . n B 2 59 CYS 59 391 391 CYS CYS B . n B 2 60 PHE 60 392 392 PHE PHE B . n B 2 61 THR 61 393 393 THR THR B . n B 2 62 ASN 62 394 394 ASN ASN B . n B 2 63 VAL 63 395 395 VAL VAL B . n B 2 64 TYR 64 396 396 TYR TYR B . n B 2 65 ALA 65 397 397 ALA ALA B . n B 2 66 ASP 66 398 398 ASP ASP B . n B 2 67 SER 67 399 399 SER SER B . n B 2 68 PHE 68 400 400 PHE PHE B . n B 2 69 VAL 69 401 401 VAL VAL B . n B 2 70 ILE 70 402 402 ILE ILE B . n B 2 71 ARG 71 403 403 ARG ARG B . n B 2 72 GLY 72 404 404 GLY GLY B . n B 2 73 ASN 73 405 405 ASN ASN B . n B 2 74 GLU 74 406 406 GLU GLU B . n B 2 75 VAL 75 407 407 VAL VAL B . n B 2 76 SER 76 408 408 SER SER B . n B 2 77 GLN 77 409 409 GLN GLN B . n B 2 78 ILE 78 410 410 ILE ILE B . n B 2 79 ALA 79 411 411 ALA ALA B . n B 2 80 PRO 80 412 412 PRO PRO B . n B 2 81 GLY 81 413 413 GLY GLY B . n B 2 82 GLN 82 414 414 GLN GLN B . n B 2 83 THR 83 415 415 THR THR B . n B 2 84 GLY 84 416 416 GLY GLY B . n B 2 85 ASN 85 417 417 ASN ASN B . n B 2 86 ILE 86 418 418 ILE ILE B . n B 2 87 ALA 87 419 419 ALA ALA B . n B 2 88 ASP 88 420 420 ASP ASP B . n B 2 89 TYR 89 421 421 TYR TYR B . n B 2 90 ASN 90 422 422 ASN ASN B . n B 2 91 TYR 91 423 423 TYR TYR B . n B 2 92 LYS 92 424 424 LYS LYS B . n B 2 93 LEU 93 425 425 LEU LEU B . n B 2 94 PRO 94 426 426 PRO PRO B . n B 2 95 ASP 95 427 427 ASP ASP B . n B 2 96 ASP 96 428 428 ASP ASP B . n B 2 97 PHE 97 429 429 PHE PHE B . n B 2 98 THR 98 430 430 THR THR B . n B 2 99 GLY 99 431 431 GLY GLY B . n B 2 100 CYS 100 432 432 CYS CYS B . n B 2 101 VAL 101 433 433 VAL VAL B . n B 2 102 ILE 102 434 434 ILE ILE B . n B 2 103 ALA 103 435 435 ALA ALA B . n B 2 104 TRP 104 436 436 TRP TRP B . n B 2 105 ASN 105 437 437 ASN ASN B . n B 2 106 SER 106 438 438 SER SER B . n B 2 107 ASN 107 439 439 ASN ASN B . n B 2 108 LYS 108 440 440 LYS LYS B . n B 2 109 LEU 109 441 441 LEU LEU B . n B 2 110 ASP 110 442 442 ASP ASP B . n B 2 111 SER 111 443 ? ? ? B . n B 2 112 LYS 112 444 ? ? ? B . n B 2 113 VAL 113 445 ? ? ? B . n B 2 114 GLY 114 446 ? ? ? B . n B 2 115 GLY 115 447 ? ? ? B . n B 2 116 ASN 116 448 ? ? ? B . n B 2 117 TYR 117 449 ? ? ? B . n B 2 118 ASN 118 450 450 ASN ASN B . n B 2 119 TYR 119 451 451 TYR TYR B . n B 2 120 LEU 120 452 452 LEU LEU B . n B 2 121 TYR 121 453 453 TYR TYR B . n B 2 122 ARG 122 454 454 ARG ARG B . n B 2 123 LEU 123 455 455 LEU LEU B . n B 2 124 PHE 124 456 456 PHE PHE B . n B 2 125 ARG 125 457 457 ARG ARG B . n B 2 126 LYS 126 458 458 LYS LYS B . n B 2 127 SER 127 459 459 SER SER B . n B 2 128 ASN 128 460 460 ASN ASN B . n B 2 129 LEU 129 461 461 LEU LEU B . n B 2 130 LYS 130 462 462 LYS LYS B . n B 2 131 PRO 131 463 463 PRO PRO B . n B 2 132 PHE 132 464 464 PHE PHE B . n B 2 133 GLU 133 465 465 GLU GLU B . n B 2 134 ARG 134 466 466 ARG ARG B . n B 2 135 ASP 135 467 467 ASP ASP B . n B 2 136 ILE 136 468 468 ILE ILE B . n B 2 137 SER 137 469 469 SER SER B . n B 2 138 THR 138 470 470 THR THR B . n B 2 139 GLU 139 471 471 GLU GLU B . n B 2 140 ILE 140 472 472 ILE ILE B . n B 2 141 TYR 141 473 473 TYR TYR B . n B 2 142 GLN 142 474 474 GLN GLN B . n B 2 143 ALA 143 475 475 ALA ALA B . n B 2 144 GLY 144 476 476 GLY GLY B . n B 2 145 ASN 145 477 477 ASN ASN B . n B 2 146 LYS 146 478 478 LYS LYS B . n B 2 147 PRO 147 479 479 PRO PRO B . n B 2 148 CYS 148 480 480 CYS CYS B . n B 2 149 ASN 149 481 481 ASN ASN B . n B 2 150 GLY 150 482 482 GLY GLY B . n B 2 151 VAL 151 483 483 VAL VAL B . n B 2 152 ALA 152 484 484 ALA ALA B . n B 2 153 GLY 153 485 485 GLY GLY B . n B 2 154 PHE 154 486 486 PHE PHE B . n B 2 155 ASN 155 487 487 ASN ASN B . n B 2 156 CYS 156 488 488 CYS CYS B . n B 2 157 TYR 157 489 489 TYR TYR B . n B 2 158 PHE 158 490 490 PHE PHE B . n B 2 159 PRO 159 491 491 PRO PRO B . n B 2 160 LEU 160 492 492 LEU LEU B . n B 2 161 ARG 161 493 493 ARG ARG B . n B 2 162 SER 162 494 494 SER SER B . n B 2 163 TYR 163 495 495 TYR TYR B . n B 2 164 GLY 164 496 496 GLY GLY B . n B 2 165 PHE 165 497 497 PHE PHE B . n B 2 166 ARG 166 498 498 ARG ARG B . n B 2 167 PRO 167 499 499 PRO PRO B . n B 2 168 THR 168 500 500 THR THR B . n B 2 169 TYR 169 501 501 TYR TYR B . n B 2 170 GLY 170 502 502 GLY GLY B . n B 2 171 VAL 171 503 503 VAL VAL B . n B 2 172 GLY 172 504 504 GLY GLY B . n B 2 173 HIS 173 505 505 HIS HIS B . n B 2 174 GLN 174 506 506 GLN GLN B . n B 2 175 PRO 175 507 507 PRO PRO B . n B 2 176 TYR 176 508 508 TYR TYR B . n B 2 177 ARG 177 509 509 ARG ARG B . n B 2 178 VAL 178 510 510 VAL VAL B . n B 2 179 VAL 179 511 511 VAL VAL B . n B 2 180 VAL 180 512 512 VAL VAL B . n B 2 181 LEU 181 513 513 LEU LEU B . n B 2 182 SER 182 514 514 SER SER B . n B 2 183 PHE 183 515 515 PHE PHE B . n B 2 184 GLU 184 516 516 GLU GLU B . n B 2 185 LEU 185 517 517 LEU LEU B . n B 2 186 LEU 186 518 518 LEU LEU B . n B 2 187 HIS 187 519 519 HIS HIS B . n B 2 188 ALA 188 520 520 ALA ALA B . n B 2 189 PRO 189 521 521 PRO PRO B . n B 2 190 ALA 190 522 522 ALA ALA B . n B 2 191 THR 191 523 523 THR THR B . n B 2 192 VAL 192 524 524 VAL VAL B . n B 2 193 CYS 193 525 525 CYS CYS B . n B 2 194 GLY 194 526 526 GLY GLY B . n B 2 195 PRO 195 527 527 PRO PRO B . n B 2 196 LYS 196 528 528 LYS LYS B . n C 1 1 GLN 1 1 ? ? ? C . n C 1 2 VAL 2 2 ? ? ? C . n C 1 3 GLN 3 3 ? ? ? C . n C 1 4 LEU 4 4 ? ? ? C . n C 1 5 VAL 5 5 ? ? ? C . n C 1 6 GLU 6 6 ? ? ? C . n C 1 7 SER 7 7 ? ? ? C . n C 1 8 GLY 8 8 ? ? ? C . n C 1 9 GLY 9 9 ? ? ? C . n C 1 10 GLY 10 10 ? ? ? C . n C 1 11 PRO 11 11 ? ? ? C . n C 1 12 VAL 12 12 ? ? ? C . n C 1 13 GLN 13 13 ? ? ? C . n C 1 14 ALA 14 14 ? ? ? C . n C 1 15 GLY 15 15 ? ? ? C . n C 1 16 GLY 16 16 ? ? ? C . n C 1 17 SER 17 17 ? ? ? C . n C 1 18 LEU 18 18 ? ? ? C . n C 1 19 ARG 19 19 ? ? ? C . n C 1 20 LEU 20 20 ? ? ? C . n C 1 21 SER 21 21 ? ? ? C . n C 1 22 CYS 22 22 ? ? ? C . n C 1 23 THR 23 23 ? ? ? C . n C 1 24 CYS 24 24 ? ? ? C . n C 1 25 SER 25 25 ? ? ? C . n C 1 26 ARG 26 26 ? ? ? C . n C 1 27 CYS 27 27 ? ? ? C . n C 1 28 THR 28 28 ? ? ? C . n C 1 29 PHE 29 29 ? ? ? C . n C 1 30 ASN 30 30 ? ? ? C . n C 1 31 TRP 31 31 ? ? ? C . n C 1 32 ASP 32 32 ? ? ? C . n C 1 33 GLY 33 33 ? ? ? C . n C 1 34 MET 34 34 ? ? ? C . n C 1 35 GLY 35 35 ? ? ? C . n C 1 36 TRP 36 36 ? ? ? C . n C 1 37 PHE 37 37 ? ? ? C . n C 1 38 ARG 38 38 ? ? ? C . n C 1 39 GLN 39 39 ? ? ? C . n C 1 40 ALA 40 40 ? ? ? C . n C 1 41 PRO 41 41 ? ? ? C . n C 1 42 GLY 42 42 ? ? ? C . n C 1 43 LYS 43 43 ? ? ? C . n C 1 44 GLU 44 44 ? ? ? C . n C 1 45 ARG 45 45 ? ? ? C . n C 1 46 GLU 46 46 ? ? ? C . n C 1 47 PHE 47 47 ? ? ? C . n C 1 48 VAL 48 48 ? ? ? C . n C 1 49 ALA 49 49 49 ALA ALA C . n C 1 50 THR 50 50 50 THR THR C . n C 1 51 ILE 51 51 51 ILE ILE C . n C 1 52 SER 52 52 52 SER SER C . n C 1 53 TRP 53 53 53 TRP TRP C . n C 1 54 SER 54 54 54 SER SER C . n C 1 55 GLY 55 55 55 GLY GLY C . n C 1 56 GLN 56 56 56 GLN GLN C . n C 1 57 GLU 57 57 57 GLU GLU C . n C 1 58 PRO 58 58 58 PRO PRO C . n C 1 59 ALA 59 59 59 ALA ALA C . n C 1 60 TYR 60 60 60 TYR TYR C . n C 1 61 ALA 61 61 61 ALA ALA C . n C 1 62 ASP 62 62 62 ASP ASP C . n C 1 63 SER 63 63 ? ? ? C . n C 1 64 VAL 64 64 ? ? ? C . n C 1 65 LYS 65 65 ? ? ? C . n C 1 66 GLY 66 66 ? ? ? C . n C 1 67 ARG 67 67 ? ? ? C . n C 1 68 PHE 68 68 ? ? ? C . n C 1 69 THR 69 69 ? ? ? C . n C 1 70 ILE 70 70 ? ? ? C . n C 1 71 SER 71 71 ? ? ? C . n C 1 72 ARG 72 72 ? ? ? C . n C 1 73 ASP 73 73 ? ? ? C . n C 1 74 LYS 74 74 ? ? ? C . n C 1 75 PRO 75 75 ? ? ? C . n C 1 76 LYS 76 76 ? ? ? C . n C 1 77 ASN 77 77 ? ? ? C . n C 1 78 THR 78 78 ? ? ? C . n C 1 79 VAL 79 79 ? ? ? C . n C 1 80 TYR 80 80 ? ? ? C . n C 1 81 LEU 81 81 ? ? ? C . n C 1 82 GLN 82 82 ? ? ? C . n C 1 83 MET 83 83 ? ? ? C . n C 1 84 THR 84 84 ? ? ? C . n C 1 85 SER 85 85 ? ? ? C . n C 1 86 LEU 86 86 ? ? ? C . n C 1 87 LYS 87 87 ? ? ? C . n C 1 88 SER 88 88 ? ? ? C . n C 1 89 GLU 89 89 ? ? ? C . n C 1 90 ASP 90 90 ? ? ? C . n C 1 91 THR 91 91 ? ? ? C . n C 1 92 ALA 92 92 ? ? ? C . n C 1 93 VAL 93 93 ? ? ? C . n C 1 94 TYR 94 94 ? ? ? C . n C 1 95 TYR 95 95 ? ? ? C . n C 1 96 CYS 96 96 ? ? ? C . n C 1 97 ALA 97 97 ? ? ? C . n C 1 98 ALA 98 98 ? ? ? C . n C 1 99 ALA 99 99 ? ? ? C . n C 1 100 GLN 100 100 100 GLN GLN C . n C 1 101 TYR 101 101 101 TYR TYR C . n C 1 102 THR 102 102 102 THR THR C . n C 1 103 GLY 103 103 103 GLY GLY C . n C 1 104 ALA 104 104 104 ALA ALA C . n C 1 105 SER 105 105 105 SER SER C . n C 1 106 TYR 106 106 106 TYR TYR C . n C 1 107 SER 107 107 107 SER SER C . n C 1 108 ILE 108 108 108 ILE ILE C . n C 1 109 LEU 109 109 109 LEU LEU C . n C 1 110 ARG 110 110 110 ARG ARG C . n C 1 111 ASP 111 111 111 ASP ASP C . n C 1 112 GLN 112 112 112 GLN GLN C . n C 1 113 VAL 113 113 113 VAL VAL C . n C 1 114 GLY 114 114 114 GLY GLY C . n C 1 115 TYR 115 115 115 TYR TYR C . n C 1 116 ASP 116 116 116 ASP ASP C . n C 1 117 TYR 117 117 117 TYR TYR C . n C 1 118 TRP 118 118 ? ? ? C . n C 1 119 GLY 119 119 ? ? ? C . n C 1 120 GLN 120 120 ? ? ? C . n C 1 121 GLY 121 121 ? ? ? C . n C 1 122 THR 122 122 ? ? ? C . n C 1 123 ARG 123 123 ? ? ? C . n C 1 124 VAL 124 124 ? ? ? C . n C 1 125 THR 125 125 ? ? ? C . n C 1 126 VAL 126 126 ? ? ? C . n C 1 127 SER 127 127 ? ? ? C . n C 1 128 ALA 128 128 ? ? ? C . n C 1 129 GLU 129 129 ? ? ? C . n C 1 130 PRO 130 130 ? ? ? C . n C 1 131 LYS 131 131 ? ? ? C . n C 1 132 THR 132 132 ? ? ? C . n C 1 133 PRO 133 133 ? ? ? C . n C 1 134 LYS 134 134 ? ? ? C . n C 1 135 PRO 135 135 ? ? ? C . n C 1 136 GLN 136 136 ? ? ? C . n C 1 137 ASP 137 137 ? ? ? C . n C 1 138 GLY 138 138 ? ? ? C . n C 1 139 GLN 139 139 ? ? ? C . n C 1 140 ALA 140 140 ? ? ? C . n C 1 141 GLY 141 141 ? ? ? C . n C 1 142 GLN 142 142 ? ? ? C . n D 2 1 THR 1 333 333 THR THR D . n D 2 2 ASN 2 334 334 ASN ASN D . n D 2 3 LEU 3 335 335 LEU LEU D . n D 2 4 CYS 4 336 336 CYS CYS D . n D 2 5 PRO 5 337 337 PRO PRO D . n D 2 6 PHE 6 338 338 PHE PHE D . n D 2 7 ASP 7 339 339 ASP ASP D . n D 2 8 GLU 8 340 340 GLU GLU D . n D 2 9 VAL 9 341 341 VAL VAL D . n D 2 10 PHE 10 342 342 PHE PHE D . n D 2 11 ASN 11 343 343 ASN ASN D . n D 2 12 ALA 12 344 344 ALA ALA D . n D 2 13 THR 13 345 345 THR THR D . n D 2 14 ARG 14 346 346 ARG ARG D . n D 2 15 PHE 15 347 347 PHE PHE D . n D 2 16 ALA 16 348 348 ALA ALA D . n D 2 17 SER 17 349 349 SER SER D . n D 2 18 VAL 18 350 350 VAL VAL D . n D 2 19 TYR 19 351 351 TYR TYR D . n D 2 20 ALA 20 352 352 ALA ALA D . n D 2 21 TRP 21 353 353 TRP TRP D . n D 2 22 ASN 22 354 354 ASN ASN D . n D 2 23 ARG 23 355 355 ARG ARG D . n D 2 24 LYS 24 356 356 LYS LYS D . n D 2 25 ARG 25 357 357 ARG ARG D . n D 2 26 ILE 26 358 358 ILE ILE D . n D 2 27 SER 27 359 359 SER SER D . n D 2 28 ASN 28 360 360 ASN ASN D . n D 2 29 CYS 29 361 361 CYS CYS D . n D 2 30 VAL 30 362 362 VAL VAL D . n D 2 31 ALA 31 363 363 ALA ALA D . n D 2 32 ASP 32 364 364 ASP ASP D . n D 2 33 TYR 33 365 365 TYR TYR D . n D 2 34 SER 34 366 366 SER SER D . n D 2 35 VAL 35 367 367 VAL VAL D . n D 2 36 LEU 36 368 368 LEU LEU D . n D 2 37 TYR 37 369 369 TYR TYR D . n D 2 38 ASN 38 370 370 ASN ASN D . n D 2 39 PHE 39 371 371 PHE PHE D . n D 2 40 ALA 40 372 372 ALA ALA D . n D 2 41 PRO 41 373 373 PRO PRO D . n D 2 42 PHE 42 374 374 PHE PHE D . n D 2 43 PHE 43 375 375 PHE PHE D . n D 2 44 ALA 44 376 376 ALA ALA D . n D 2 45 PHE 45 377 377 PHE PHE D . n D 2 46 LYS 46 378 378 LYS LYS D . n D 2 47 CYS 47 379 379 CYS CYS D . n D 2 48 TYR 48 380 380 TYR TYR D . n D 2 49 GLY 49 381 381 GLY GLY D . n D 2 50 VAL 50 382 382 VAL VAL D . n D 2 51 SER 51 383 383 SER SER D . n D 2 52 PRO 52 384 384 PRO PRO D . n D 2 53 THR 53 385 385 THR THR D . n D 2 54 LYS 54 386 386 LYS LYS D . n D 2 55 LEU 55 387 387 LEU LEU D . n D 2 56 ASN 56 388 388 ASN ASN D . n D 2 57 ASP 57 389 389 ASP ASP D . n D 2 58 LEU 58 390 390 LEU LEU D . n D 2 59 CYS 59 391 391 CYS CYS D . n D 2 60 PHE 60 392 392 PHE PHE D . n D 2 61 THR 61 393 393 THR THR D . n D 2 62 ASN 62 394 394 ASN ASN D . n D 2 63 VAL 63 395 395 VAL VAL D . n D 2 64 TYR 64 396 396 TYR TYR D . n D 2 65 ALA 65 397 397 ALA ALA D . n D 2 66 ASP 66 398 398 ASP ASP D . n D 2 67 SER 67 399 399 SER SER D . n D 2 68 PHE 68 400 400 PHE PHE D . n D 2 69 VAL 69 401 401 VAL VAL D . n D 2 70 ILE 70 402 402 ILE ILE D . n D 2 71 ARG 71 403 403 ARG ARG D . n D 2 72 GLY 72 404 404 GLY GLY D . n D 2 73 ASN 73 405 405 ASN ASN D . n D 2 74 GLU 74 406 406 GLU GLU D . n D 2 75 VAL 75 407 407 VAL VAL D . n D 2 76 SER 76 408 408 SER SER D . n D 2 77 GLN 77 409 409 GLN GLN D . n D 2 78 ILE 78 410 410 ILE ILE D . n D 2 79 ALA 79 411 411 ALA ALA D . n D 2 80 PRO 80 412 412 PRO PRO D . n D 2 81 GLY 81 413 413 GLY GLY D . n D 2 82 GLN 82 414 414 GLN GLN D . n D 2 83 THR 83 415 415 THR THR D . n D 2 84 GLY 84 416 416 GLY GLY D . n D 2 85 ASN 85 417 417 ASN ASN D . n D 2 86 ILE 86 418 418 ILE ILE D . n D 2 87 ALA 87 419 419 ALA ALA D . n D 2 88 ASP 88 420 420 ASP ASP D . n D 2 89 TYR 89 421 421 TYR TYR D . n D 2 90 ASN 90 422 422 ASN ASN D . n D 2 91 TYR 91 423 423 TYR TYR D . n D 2 92 LYS 92 424 424 LYS LYS D . n D 2 93 LEU 93 425 425 LEU LEU D . n D 2 94 PRO 94 426 426 PRO PRO D . n D 2 95 ASP 95 427 427 ASP ASP D . n D 2 96 ASP 96 428 428 ASP ASP D . n D 2 97 PHE 97 429 429 PHE PHE D . n D 2 98 THR 98 430 430 THR THR D . n D 2 99 GLY 99 431 431 GLY GLY D . n D 2 100 CYS 100 432 432 CYS CYS D . n D 2 101 VAL 101 433 433 VAL VAL D . n D 2 102 ILE 102 434 434 ILE ILE D . n D 2 103 ALA 103 435 435 ALA ALA D . n D 2 104 TRP 104 436 436 TRP TRP D . n D 2 105 ASN 105 437 437 ASN ASN D . n D 2 106 SER 106 438 438 SER SER D . n D 2 107 ASN 107 439 439 ASN ASN D . n D 2 108 LYS 108 440 440 LYS LYS D . n D 2 109 LEU 109 441 441 LEU LEU D . n D 2 110 ASP 110 442 442 ASP ASP D . n D 2 111 SER 111 443 ? ? ? D . n D 2 112 LYS 112 444 ? ? ? D . n D 2 113 VAL 113 445 ? ? ? D . n D 2 114 GLY 114 446 ? ? ? D . n D 2 115 GLY 115 447 ? ? ? D . n D 2 116 ASN 116 448 ? ? ? D . n D 2 117 TYR 117 449 ? ? ? D . n D 2 118 ASN 118 450 450 ASN ASN D . n D 2 119 TYR 119 451 451 TYR TYR D . n D 2 120 LEU 120 452 452 LEU LEU D . n D 2 121 TYR 121 453 453 TYR TYR D . n D 2 122 ARG 122 454 454 ARG ARG D . n D 2 123 LEU 123 455 455 LEU LEU D . n D 2 124 PHE 124 456 456 PHE PHE D . n D 2 125 ARG 125 457 457 ARG ARG D . n D 2 126 LYS 126 458 458 LYS LYS D . n D 2 127 SER 127 459 459 SER SER D . n D 2 128 ASN 128 460 460 ASN ASN D . n D 2 129 LEU 129 461 461 LEU LEU D . n D 2 130 LYS 130 462 462 LYS LYS D . n D 2 131 PRO 131 463 463 PRO PRO D . n D 2 132 PHE 132 464 464 PHE PHE D . n D 2 133 GLU 133 465 465 GLU GLU D . n D 2 134 ARG 134 466 466 ARG ARG D . n D 2 135 ASP 135 467 467 ASP ASP D . n D 2 136 ILE 136 468 468 ILE ILE D . n D 2 137 SER 137 469 469 SER SER D . n D 2 138 THR 138 470 470 THR THR D . n D 2 139 GLU 139 471 471 GLU GLU D . n D 2 140 ILE 140 472 472 ILE ILE D . n D 2 141 TYR 141 473 473 TYR TYR D . n D 2 142 GLN 142 474 474 GLN GLN D . n D 2 143 ALA 143 475 475 ALA ALA D . n D 2 144 GLY 144 476 476 GLY GLY D . n D 2 145 ASN 145 477 477 ASN ASN D . n D 2 146 LYS 146 478 478 LYS LYS D . n D 2 147 PRO 147 479 479 PRO PRO D . n D 2 148 CYS 148 480 480 CYS CYS D . n D 2 149 ASN 149 481 481 ASN ASN D . n D 2 150 GLY 150 482 482 GLY GLY D . n D 2 151 VAL 151 483 483 VAL VAL D . n D 2 152 ALA 152 484 484 ALA ALA D . n D 2 153 GLY 153 485 485 GLY GLY D . n D 2 154 PHE 154 486 486 PHE PHE D . n D 2 155 ASN 155 487 487 ASN ASN D . n D 2 156 CYS 156 488 488 CYS CYS D . n D 2 157 TYR 157 489 489 TYR TYR D . n D 2 158 PHE 158 490 490 PHE PHE D . n D 2 159 PRO 159 491 491 PRO PRO D . n D 2 160 LEU 160 492 492 LEU LEU D . n D 2 161 ARG 161 493 493 ARG ARG D . n D 2 162 SER 162 494 494 SER SER D . n D 2 163 TYR 163 495 495 TYR TYR D . n D 2 164 GLY 164 496 496 GLY GLY D . n D 2 165 PHE 165 497 497 PHE PHE D . n D 2 166 ARG 166 498 498 ARG ARG D . n D 2 167 PRO 167 499 499 PRO PRO D . n D 2 168 THR 168 500 500 THR THR D . n D 2 169 TYR 169 501 501 TYR TYR D . n D 2 170 GLY 170 502 502 GLY GLY D . n D 2 171 VAL 171 503 503 VAL VAL D . n D 2 172 GLY 172 504 504 GLY GLY D . n D 2 173 HIS 173 505 505 HIS HIS D . n D 2 174 GLN 174 506 506 GLN GLN D . n D 2 175 PRO 175 507 507 PRO PRO D . n D 2 176 TYR 176 508 508 TYR TYR D . n D 2 177 ARG 177 509 509 ARG ARG D . n D 2 178 VAL 178 510 510 VAL VAL D . n D 2 179 VAL 179 511 511 VAL VAL D . n D 2 180 VAL 180 512 512 VAL VAL D . n D 2 181 LEU 181 513 513 LEU LEU D . n D 2 182 SER 182 514 514 SER SER D . n D 2 183 PHE 183 515 515 PHE PHE D . n D 2 184 GLU 184 516 516 GLU GLU D . n D 2 185 LEU 185 517 517 LEU LEU D . n D 2 186 LEU 186 518 518 LEU LEU D . n D 2 187 HIS 187 519 519 HIS HIS D . n D 2 188 ALA 188 520 520 ALA ALA D . n D 2 189 PRO 189 521 521 PRO PRO D . n D 2 190 ALA 190 522 522 ALA ALA D . n D 2 191 THR 191 523 523 THR THR D . n D 2 192 VAL 192 524 524 VAL VAL D . n D 2 193 CYS 193 525 525 CYS CYS D . n D 2 194 GLY 194 526 526 GLY GLY D . n D 2 195 PRO 195 527 527 PRO PRO D . n D 2 196 LYS 196 528 528 LYS LYS D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B THR 333 ? OG1 ? B THR 1 OG1 2 1 Y 1 B THR 333 ? CG2 ? B THR 1 CG2 3 1 Y 1 D THR 333 ? OG1 ? D THR 1 OG1 4 1 Y 1 D THR 333 ? CG2 ? D THR 1 CG2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8JYS _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8JYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8JYS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8JYS _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3625 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.066 ? 4930 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.944 ? 492 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.048 ? 509 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.012 ? 644 ? f_plane_restr ? ? # _struct.entry_id 8JYS _struct.title 'SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8JYS _struct_keywords.text 'Spike, nanobody, dimer, local, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8JYS 8JYS ? 1 ? 1 2 UNP SPIKE_SARS2 P0DTC2 ? 2 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; 333 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8JYS A 1 ? 142 ? 8JYS 1 ? 142 ? 1 142 2 2 8JYS B 1 ? 196 ? P0DTC2 333 ? 528 ? 333 528 3 1 8JYS C 1 ? 142 ? 8JYS 1 ? 142 ? 1 142 4 2 8JYS D 1 ? 196 ? P0DTC2 333 ? 528 ? 333 528 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 8JYS ASP B 7 ? UNP P0DTC2 GLY 339 variant 339 1 2 8JYS PHE B 39 ? UNP P0DTC2 SER 371 variant 371 2 2 8JYS PRO B 41 ? UNP P0DTC2 SER 373 variant 373 3 2 8JYS PHE B 43 ? UNP P0DTC2 SER 375 variant 375 4 2 8JYS ALA B 44 ? UNP P0DTC2 THR 376 variant 376 5 2 8JYS ASN B 73 ? UNP P0DTC2 ASP 405 variant 405 6 2 8JYS SER B 76 ? UNP P0DTC2 ARG 408 variant 408 7 2 8JYS ASN B 85 ? UNP P0DTC2 LYS 417 variant 417 8 2 8JYS LYS B 108 ? UNP P0DTC2 ASN 440 variant 440 9 2 8JYS ASN B 145 ? UNP P0DTC2 SER 477 variant 477 10 2 8JYS LYS B 146 ? UNP P0DTC2 THR 478 variant 478 11 2 8JYS ALA B 152 ? UNP P0DTC2 GLU 484 variant 484 12 2 8JYS ARG B 161 ? UNP P0DTC2 GLN 493 variant 493 13 2 8JYS ARG B 166 ? UNP P0DTC2 GLN 498 variant 498 14 2 8JYS TYR B 169 ? UNP P0DTC2 ASN 501 variant 501 15 2 8JYS HIS B 173 ? UNP P0DTC2 TYR 505 variant 505 16 4 8JYS ASP D 7 ? UNP P0DTC2 GLY 339 variant 339 17 4 8JYS PHE D 39 ? UNP P0DTC2 SER 371 variant 371 18 4 8JYS PRO D 41 ? UNP P0DTC2 SER 373 variant 373 19 4 8JYS PHE D 43 ? UNP P0DTC2 SER 375 variant 375 20 4 8JYS ALA D 44 ? UNP P0DTC2 THR 376 variant 376 21 4 8JYS ASN D 73 ? UNP P0DTC2 ASP 405 variant 405 22 4 8JYS SER D 76 ? UNP P0DTC2 ARG 408 variant 408 23 4 8JYS ASN D 85 ? UNP P0DTC2 LYS 417 variant 417 24 4 8JYS LYS D 108 ? UNP P0DTC2 ASN 440 variant 440 25 4 8JYS ASN D 145 ? UNP P0DTC2 SER 477 variant 477 26 4 8JYS LYS D 146 ? UNP P0DTC2 THR 478 variant 478 27 4 8JYS ALA D 152 ? UNP P0DTC2 GLU 484 variant 484 28 4 8JYS ARG D 161 ? UNP P0DTC2 GLN 493 variant 493 29 4 8JYS ARG D 166 ? UNP P0DTC2 GLN 498 variant 498 30 4 8JYS TYR D 169 ? UNP P0DTC2 ASN 501 variant 501 31 4 8JYS HIS D 173 ? UNP P0DTC2 TYR 505 variant 505 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE B 6 ? ASN B 11 ? PHE B 338 ASN B 343 1 ? 6 HELX_P HELX_P2 AA2 SER B 51 ? LEU B 58 ? SER B 383 LEU B 390 1 ? 8 HELX_P HELX_P3 AA3 GLU B 74 ? ALA B 79 ? GLU B 406 ALA B 411 1 ? 6 HELX_P HELX_P4 AA4 PHE D 6 ? ASN D 11 ? PHE D 338 ASN D 343 1 ? 6 HELX_P HELX_P5 AA5 TYR D 33 ? ASN D 38 ? TYR D 365 ASN D 370 1 ? 6 HELX_P HELX_P6 AA6 SER D 51 ? ASN D 56 ? SER D 383 ASN D 388 1 ? 6 HELX_P HELX_P7 AA7 GLY D 72 ? ILE D 78 ? GLY D 404 ILE D 410 5 ? 7 HELX_P HELX_P8 AA8 GLY D 84 ? ASN D 90 ? GLY D 416 ASN D 422 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 29 SG ? ? B CYS 336 B CYS 361 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf2 disulf ? ? B CYS 47 SG ? ? ? 1_555 B CYS 100 SG ? ? B CYS 379 B CYS 432 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? B CYS 59 SG ? ? ? 1_555 B CYS 193 SG ? ? B CYS 391 B CYS 525 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 148 SG ? ? ? 1_555 B CYS 156 SG ? ? B CYS 480 B CYS 488 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? D CYS 4 SG ? ? ? 1_555 D CYS 29 SG ? ? D CYS 336 D CYS 361 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf6 disulf ? ? D CYS 47 SG ? ? ? 1_555 D CYS 100 SG ? ? D CYS 379 D CYS 432 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf7 disulf ? ? D CYS 59 SG ? ? ? 1_555 D CYS 193 SG ? ? D CYS 391 D CYS 525 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf8 disulf ? ? D CYS 148 SG ? ? ? 1_555 D CYS 156 SG ? ? D CYS 480 D CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 5 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS B 24 ? ILE B 26 ? LYS B 356 ILE B 358 AA1 2 ASN B 62 ? ILE B 70 ? ASN B 394 ILE B 402 AA1 3 TYR B 176 ? LEU B 181 ? TYR B 508 LEU B 513 AA1 4 CYS B 100 ? ASN B 105 ? CYS B 432 ASN B 437 AA2 1 LYS B 24 ? ILE B 26 ? LYS B 356 ILE B 358 AA2 2 ASN B 62 ? ILE B 70 ? ASN B 394 ILE B 402 AA2 3 PHE B 183 ? GLU B 184 ? PHE B 515 GLU B 516 AA3 1 LEU B 120 ? TYR B 121 ? LEU B 452 TYR B 453 AA3 2 ARG B 161 ? SER B 162 ? ARG B 493 SER B 494 AA4 1 LYS D 24 ? ILE D 26 ? LYS D 356 ILE D 358 AA4 2 ASN D 62 ? PHE D 68 ? ASN D 394 PHE D 400 AA4 3 TYR D 176 ? GLU D 184 ? TYR D 508 GLU D 516 AA4 4 CYS D 100 ? ASN D 105 ? CYS D 432 ASN D 437 AA4 5 LYS D 46 ? CYS D 47 ? LYS D 378 CYS D 379 AA5 1 TYR D 141 ? GLN D 142 ? TYR D 473 GLN D 474 AA5 2 CYS D 156 ? TYR D 157 ? CYS D 488 TYR D 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE B 26 ? N ILE B 358 O VAL B 63 ? O VAL B 395 AA1 2 3 N PHE B 68 ? N PHE B 400 O VAL B 178 ? O VAL B 510 AA1 3 4 O VAL B 179 ? O VAL B 511 N ILE B 102 ? N ILE B 434 AA2 1 2 N ILE B 26 ? N ILE B 358 O VAL B 63 ? O VAL B 395 AA2 2 3 N ASN B 62 ? N ASN B 394 O GLU B 184 ? O GLU B 516 AA3 1 2 N TYR B 121 ? N TYR B 453 O ARG B 161 ? O ARG B 493 AA4 1 2 N LYS D 24 ? N LYS D 356 O ALA D 65 ? O ALA D 397 AA4 2 3 N ASP D 66 ? N ASP D 398 O VAL D 180 ? O VAL D 512 AA4 3 4 O LEU D 181 ? O LEU D 513 N CYS D 100 ? N CYS D 432 AA4 4 5 O VAL D 101 ? O VAL D 433 N LYS D 46 ? N LYS D 378 AA5 1 2 N TYR D 141 ? N TYR D 473 O TYR D 157 ? O TYR D 489 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 107 ? ? -91.44 50.00 2 1 TYR A 115 ? ? 69.77 155.64 3 1 ALA B 348 ? ? 59.38 -170.00 4 1 SER B 359 ? ? -75.20 -169.40 5 1 ASN B 370 ? ? 36.34 47.93 6 1 PHE B 371 ? ? -79.86 -163.34 7 1 PHE B 374 ? ? 65.69 120.52 8 1 ARG B 403 ? ? -76.38 -164.06 9 1 LYS B 462 ? ? -64.67 -178.03 10 1 PHE B 464 ? ? 62.13 64.33 11 1 GLU B 465 ? ? -114.33 -163.40 12 1 ASN B 481 ? ? 39.74 42.70 13 1 ASN B 487 ? ? 72.22 -7.99 14 1 HIS B 505 ? ? -97.08 57.32 15 1 HIS B 519 ? ? -68.54 -178.15 16 1 ALA B 522 ? ? -80.99 47.92 17 1 VAL B 524 ? ? 34.29 -149.99 18 1 THR C 50 ? ? -93.02 -62.04 19 1 ILE C 51 ? ? 65.67 145.20 20 1 GLU C 57 ? ? 52.39 76.73 21 1 TYR C 101 ? ? 70.17 147.97 22 1 ALA C 104 ? ? -170.20 -169.98 23 1 PHE D 338 ? ? 31.15 -73.40 24 1 SER D 359 ? ? -78.67 -168.62 25 1 PRO D 373 ? ? -67.42 -178.30 26 1 PHE D 374 ? ? 58.06 -146.09 27 1 PHE D 375 ? ? 59.24 71.98 28 1 ASP D 389 ? ? -96.36 -60.05 29 1 ASN D 422 ? ? -99.07 30.46 30 1 TYR D 423 ? ? 84.69 147.66 31 1 ASN D 487 ? ? 59.73 13.11 32 1 LEU D 492 ? ? 76.81 139.42 33 1 ARG D 498 ? ? -115.24 62.33 34 1 ALA D 520 ? ? 58.26 76.06 35 1 VAL D 524 ? ? 77.07 87.13 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8JYS _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8JYS _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 203158 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'complex of RBD domain of SARS-CoV-2 spike protein and IBT-CoV144' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8JYS _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min 1500 _em_imaging.calibrated_defocus_max 2500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 93 _em_imaging.recording_temperature_maximum 93 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8JYS _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8JYS _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 1 ? A GLN 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A SER 7 ? A SER 7 8 1 Y 1 A GLY 8 ? A GLY 8 9 1 Y 1 A GLY 9 ? A GLY 9 10 1 Y 1 A GLY 10 ? A GLY 10 11 1 Y 1 A PRO 11 ? A PRO 11 12 1 Y 1 A VAL 12 ? A VAL 12 13 1 Y 1 A GLN 13 ? A GLN 13 14 1 Y 1 A ALA 14 ? A ALA 14 15 1 Y 1 A GLY 15 ? A GLY 15 16 1 Y 1 A GLY 16 ? A GLY 16 17 1 Y 1 A SER 17 ? A SER 17 18 1 Y 1 A LEU 18 ? A LEU 18 19 1 Y 1 A ARG 19 ? A ARG 19 20 1 Y 1 A LEU 20 ? A LEU 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A CYS 22 ? A CYS 22 23 1 Y 1 A THR 23 ? A THR 23 24 1 Y 1 A CYS 24 ? A CYS 24 25 1 Y 1 A SER 25 ? A SER 25 26 1 Y 1 A ARG 26 ? A ARG 26 27 1 Y 1 A CYS 27 ? A CYS 27 28 1 Y 1 A THR 28 ? A THR 28 29 1 Y 1 A PHE 29 ? A PHE 29 30 1 Y 1 A ASN 30 ? A ASN 30 31 1 Y 1 A TRP 31 ? A TRP 31 32 1 Y 1 A ASP 32 ? A ASP 32 33 1 Y 1 A GLY 33 ? A GLY 33 34 1 Y 1 A MET 34 ? A MET 34 35 1 Y 1 A GLY 35 ? A GLY 35 36 1 Y 1 A TRP 36 ? A TRP 36 37 1 Y 1 A PHE 37 ? A PHE 37 38 1 Y 1 A ARG 38 ? A ARG 38 39 1 Y 1 A GLN 39 ? A GLN 39 40 1 Y 1 A ALA 40 ? A ALA 40 41 1 Y 1 A PRO 41 ? A PRO 41 42 1 Y 1 A GLY 42 ? A GLY 42 43 1 Y 1 A LYS 43 ? A LYS 43 44 1 Y 1 A GLU 44 ? A GLU 44 45 1 Y 1 A ARG 45 ? A ARG 45 46 1 Y 1 A GLU 46 ? A GLU 46 47 1 Y 1 A PHE 47 ? A PHE 47 48 1 Y 1 A VAL 48 ? A VAL 48 49 1 Y 1 A SER 63 ? A SER 63 50 1 Y 1 A VAL 64 ? A VAL 64 51 1 Y 1 A LYS 65 ? A LYS 65 52 1 Y 1 A GLY 66 ? A GLY 66 53 1 Y 1 A ARG 67 ? A ARG 67 54 1 Y 1 A PHE 68 ? A PHE 68 55 1 Y 1 A THR 69 ? A THR 69 56 1 Y 1 A ILE 70 ? A ILE 70 57 1 Y 1 A SER 71 ? A SER 71 58 1 Y 1 A ARG 72 ? A ARG 72 59 1 Y 1 A ASP 73 ? A ASP 73 60 1 Y 1 A LYS 74 ? A LYS 74 61 1 Y 1 A PRO 75 ? A PRO 75 62 1 Y 1 A LYS 76 ? A LYS 76 63 1 Y 1 A ASN 77 ? A ASN 77 64 1 Y 1 A THR 78 ? A THR 78 65 1 Y 1 A VAL 79 ? A VAL 79 66 1 Y 1 A TYR 80 ? A TYR 80 67 1 Y 1 A LEU 81 ? A LEU 81 68 1 Y 1 A GLN 82 ? A GLN 82 69 1 Y 1 A MET 83 ? A MET 83 70 1 Y 1 A THR 84 ? A THR 84 71 1 Y 1 A SER 85 ? A SER 85 72 1 Y 1 A LEU 86 ? A LEU 86 73 1 Y 1 A LYS 87 ? A LYS 87 74 1 Y 1 A SER 88 ? A SER 88 75 1 Y 1 A GLU 89 ? A GLU 89 76 1 Y 1 A ASP 90 ? A ASP 90 77 1 Y 1 A THR 91 ? A THR 91 78 1 Y 1 A ALA 92 ? A ALA 92 79 1 Y 1 A VAL 93 ? A VAL 93 80 1 Y 1 A TYR 94 ? A TYR 94 81 1 Y 1 A TYR 95 ? A TYR 95 82 1 Y 1 A CYS 96 ? A CYS 96 83 1 Y 1 A ALA 97 ? A ALA 97 84 1 Y 1 A ALA 98 ? A ALA 98 85 1 Y 1 A ALA 99 ? A ALA 99 86 1 Y 1 A TYR 117 ? A TYR 117 87 1 Y 1 A TRP 118 ? A TRP 118 88 1 Y 1 A GLY 119 ? A GLY 119 89 1 Y 1 A GLN 120 ? A GLN 120 90 1 Y 1 A GLY 121 ? A GLY 121 91 1 Y 1 A THR 122 ? A THR 122 92 1 Y 1 A ARG 123 ? A ARG 123 93 1 Y 1 A VAL 124 ? A VAL 124 94 1 Y 1 A THR 125 ? A THR 125 95 1 Y 1 A VAL 126 ? A VAL 126 96 1 Y 1 A SER 127 ? A SER 127 97 1 Y 1 A ALA 128 ? A ALA 128 98 1 Y 1 A GLU 129 ? A GLU 129 99 1 Y 1 A PRO 130 ? A PRO 130 100 1 Y 1 A LYS 131 ? A LYS 131 101 1 Y 1 A THR 132 ? A THR 132 102 1 Y 1 A PRO 133 ? A PRO 133 103 1 Y 1 A LYS 134 ? A LYS 134 104 1 Y 1 A PRO 135 ? A PRO 135 105 1 Y 1 A GLN 136 ? A GLN 136 106 1 Y 1 A ASP 137 ? A ASP 137 107 1 Y 1 A GLY 138 ? A GLY 138 108 1 Y 1 A GLN 139 ? A GLN 139 109 1 Y 1 A ALA 140 ? A ALA 140 110 1 Y 1 A GLY 141 ? A GLY 141 111 1 Y 1 A GLN 142 ? A GLN 142 112 1 Y 1 B SER 443 ? B SER 111 113 1 Y 1 B LYS 444 ? B LYS 112 114 1 Y 1 B VAL 445 ? B VAL 113 115 1 Y 1 B GLY 446 ? B GLY 114 116 1 Y 1 B GLY 447 ? B GLY 115 117 1 Y 1 B ASN 448 ? B ASN 116 118 1 Y 1 B TYR 449 ? B TYR 117 119 1 Y 1 C GLN 1 ? C GLN 1 120 1 Y 1 C VAL 2 ? C VAL 2 121 1 Y 1 C GLN 3 ? C GLN 3 122 1 Y 1 C LEU 4 ? C LEU 4 123 1 Y 1 C VAL 5 ? C VAL 5 124 1 Y 1 C GLU 6 ? C GLU 6 125 1 Y 1 C SER 7 ? C SER 7 126 1 Y 1 C GLY 8 ? C GLY 8 127 1 Y 1 C GLY 9 ? C GLY 9 128 1 Y 1 C GLY 10 ? C GLY 10 129 1 Y 1 C PRO 11 ? C PRO 11 130 1 Y 1 C VAL 12 ? C VAL 12 131 1 Y 1 C GLN 13 ? C GLN 13 132 1 Y 1 C ALA 14 ? C ALA 14 133 1 Y 1 C GLY 15 ? C GLY 15 134 1 Y 1 C GLY 16 ? C GLY 16 135 1 Y 1 C SER 17 ? C SER 17 136 1 Y 1 C LEU 18 ? C LEU 18 137 1 Y 1 C ARG 19 ? C ARG 19 138 1 Y 1 C LEU 20 ? C LEU 20 139 1 Y 1 C SER 21 ? C SER 21 140 1 Y 1 C CYS 22 ? C CYS 22 141 1 Y 1 C THR 23 ? C THR 23 142 1 Y 1 C CYS 24 ? C CYS 24 143 1 Y 1 C SER 25 ? C SER 25 144 1 Y 1 C ARG 26 ? C ARG 26 145 1 Y 1 C CYS 27 ? C CYS 27 146 1 Y 1 C THR 28 ? C THR 28 147 1 Y 1 C PHE 29 ? C PHE 29 148 1 Y 1 C ASN 30 ? C ASN 30 149 1 Y 1 C TRP 31 ? C TRP 31 150 1 Y 1 C ASP 32 ? C ASP 32 151 1 Y 1 C GLY 33 ? C GLY 33 152 1 Y 1 C MET 34 ? C MET 34 153 1 Y 1 C GLY 35 ? C GLY 35 154 1 Y 1 C TRP 36 ? C TRP 36 155 1 Y 1 C PHE 37 ? C PHE 37 156 1 Y 1 C ARG 38 ? C ARG 38 157 1 Y 1 C GLN 39 ? C GLN 39 158 1 Y 1 C ALA 40 ? C ALA 40 159 1 Y 1 C PRO 41 ? C PRO 41 160 1 Y 1 C GLY 42 ? C GLY 42 161 1 Y 1 C LYS 43 ? C LYS 43 162 1 Y 1 C GLU 44 ? C GLU 44 163 1 Y 1 C ARG 45 ? C ARG 45 164 1 Y 1 C GLU 46 ? C GLU 46 165 1 Y 1 C PHE 47 ? C PHE 47 166 1 Y 1 C VAL 48 ? C VAL 48 167 1 Y 1 C SER 63 ? C SER 63 168 1 Y 1 C VAL 64 ? C VAL 64 169 1 Y 1 C LYS 65 ? C LYS 65 170 1 Y 1 C GLY 66 ? C GLY 66 171 1 Y 1 C ARG 67 ? C ARG 67 172 1 Y 1 C PHE 68 ? C PHE 68 173 1 Y 1 C THR 69 ? C THR 69 174 1 Y 1 C ILE 70 ? C ILE 70 175 1 Y 1 C SER 71 ? C SER 71 176 1 Y 1 C ARG 72 ? C ARG 72 177 1 Y 1 C ASP 73 ? C ASP 73 178 1 Y 1 C LYS 74 ? C LYS 74 179 1 Y 1 C PRO 75 ? C PRO 75 180 1 Y 1 C LYS 76 ? C LYS 76 181 1 Y 1 C ASN 77 ? C ASN 77 182 1 Y 1 C THR 78 ? C THR 78 183 1 Y 1 C VAL 79 ? C VAL 79 184 1 Y 1 C TYR 80 ? C TYR 80 185 1 Y 1 C LEU 81 ? C LEU 81 186 1 Y 1 C GLN 82 ? C GLN 82 187 1 Y 1 C MET 83 ? C MET 83 188 1 Y 1 C THR 84 ? C THR 84 189 1 Y 1 C SER 85 ? C SER 85 190 1 Y 1 C LEU 86 ? C LEU 86 191 1 Y 1 C LYS 87 ? C LYS 87 192 1 Y 1 C SER 88 ? C SER 88 193 1 Y 1 C GLU 89 ? C GLU 89 194 1 Y 1 C ASP 90 ? C ASP 90 195 1 Y 1 C THR 91 ? C THR 91 196 1 Y 1 C ALA 92 ? C ALA 92 197 1 Y 1 C VAL 93 ? C VAL 93 198 1 Y 1 C TYR 94 ? C TYR 94 199 1 Y 1 C TYR 95 ? C TYR 95 200 1 Y 1 C CYS 96 ? C CYS 96 201 1 Y 1 C ALA 97 ? C ALA 97 202 1 Y 1 C ALA 98 ? C ALA 98 203 1 Y 1 C ALA 99 ? C ALA 99 204 1 Y 1 C TRP 118 ? C TRP 118 205 1 Y 1 C GLY 119 ? C GLY 119 206 1 Y 1 C GLN 120 ? C GLN 120 207 1 Y 1 C GLY 121 ? C GLY 121 208 1 Y 1 C THR 122 ? C THR 122 209 1 Y 1 C ARG 123 ? C ARG 123 210 1 Y 1 C VAL 124 ? C VAL 124 211 1 Y 1 C THR 125 ? C THR 125 212 1 Y 1 C VAL 126 ? C VAL 126 213 1 Y 1 C SER 127 ? C SER 127 214 1 Y 1 C ALA 128 ? C ALA 128 215 1 Y 1 C GLU 129 ? C GLU 129 216 1 Y 1 C PRO 130 ? C PRO 130 217 1 Y 1 C LYS 131 ? C LYS 131 218 1 Y 1 C THR 132 ? C THR 132 219 1 Y 1 C PRO 133 ? C PRO 133 220 1 Y 1 C LYS 134 ? C LYS 134 221 1 Y 1 C PRO 135 ? C PRO 135 222 1 Y 1 C GLN 136 ? C GLN 136 223 1 Y 1 C ASP 137 ? C ASP 137 224 1 Y 1 C GLY 138 ? C GLY 138 225 1 Y 1 C GLN 139 ? C GLN 139 226 1 Y 1 C ALA 140 ? C ALA 140 227 1 Y 1 C GLY 141 ? C GLY 141 228 1 Y 1 C GLN 142 ? C GLN 142 229 1 Y 1 D SER 443 ? D SER 111 230 1 Y 1 D LYS 444 ? D LYS 112 231 1 Y 1 D VAL 445 ? D VAL 113 232 1 Y 1 D GLY 446 ? D GLY 114 233 1 Y 1 D GLY 447 ? D GLY 115 234 1 Y 1 D ASN 448 ? D ASN 116 235 1 Y 1 D TYR 449 ? D TYR 117 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9837 _em_entity_assembly_naturalsource.organism 'Camelus bactrianus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 3.3.2 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM 4 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 3.3 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 3.3 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 3.3 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 1.2 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8JYS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_