data_8K2Z # _entry.id 8K2Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8K2Z pdb_00008k2z 10.2210/pdb8k2z/pdb WWPDB D_1300039406 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-01-15 ? 2 'Structure model' 1 1 2025-07-30 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8K2Z _pdbx_database_status.recvd_initial_deposition_date 2023-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, Y.' 1 ? 'Deng, J.' 2 ? 'Lin, X.' 3 ? 'Huang, L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Discov' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2056-5968 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 128 _citation.page_last 128 _citation.title 'Structural basis for tRNA mimicry by mascRNA and menRNA.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41421-024-00761-1 _citation.pdbx_database_id_PubMed 39743619 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, Y.' 1 0009-0001-6301-881X primary 'Deng, J.' 2 ? primary 'Lin, X.' 3 ? primary 'Lu, Z.' 4 ? primary 'Wang, L.' 5 ? primary 'Xu, L.' 6 ? primary 'Zhang, Y.' 7 ? primary 'Wang, J.' 8 ? primary 'Huang, L.' 9 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (57-MER)' 18349.811 2 ? A2G ? ? 2 non-polymer syn 'SODIUM ION' 22.990 12 ? ? ? ? 3 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUGCUGGUGGUUGGCACUCCUGGUUUCCAGGACGGGGUUCAAAUCCCUGCGGCGUC _entity_poly.pdbx_seq_one_letter_code_can GGUGCUGGUGGUUGGCACUCCUGGUUUCCAGGACGGGGUUCAAAUCCCUGCGGCGUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 U n 1 14 G n 1 15 G n 1 16 C n 1 17 A n 1 18 C n 1 19 U n 1 20 C n 1 21 C n 1 22 U n 1 23 G n 1 24 G n 1 25 U n 1 26 U n 1 27 U n 1 28 C n 1 29 C n 1 30 A n 1 31 G n 1 32 G n 1 33 A n 1 34 C n 1 35 G n 1 36 G n 1 37 G n 1 38 G n 1 39 U n 1 40 U n 1 41 C n 1 42 A n 1 43 A n 1 44 A n 1 45 U n 1 46 C n 1 47 C n 1 48 C n 1 49 U n 1 50 G n 1 51 C n 1 52 G n 1 53 G n 1 54 C n 1 55 G n 1 56 U n 1 57 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 57 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 U 26 26 26 U U A . n A 1 27 U 27 27 27 U U A . n A 1 28 C 28 28 28 C C A . n A 1 29 C 29 29 29 C C A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 A 42 42 42 A A A . n A 1 43 A 43 43 43 A A A . n A 1 44 A 44 44 44 A A A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 G 52 52 52 G G A . n A 1 53 G 53 53 53 G G A . n A 1 54 C 54 54 54 C C A . n A 1 55 G 55 55 55 G G A . n A 1 56 U 56 56 56 U U A . n A 1 57 C 57 57 57 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 U 13 13 13 U U B . n B 1 14 G 14 14 14 G G B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n B 1 17 A 17 17 17 A A B . n B 1 18 C 18 18 18 C C B . n B 1 19 U 19 19 19 U U B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 U 22 22 22 U U B . n B 1 23 G 23 23 23 G G B . n B 1 24 G 24 24 24 G G B . n B 1 25 U 25 25 ? ? ? B . n B 1 26 U 26 26 ? ? ? B . n B 1 27 U 27 27 ? ? ? B . n B 1 28 C 28 28 ? ? ? B . n B 1 29 C 29 29 ? ? ? B . n B 1 30 A 30 30 30 A A B . n B 1 31 G 31 31 31 G G B . n B 1 32 G 32 32 32 G G B . n B 1 33 A 33 33 33 A A B . n B 1 34 C 34 34 34 C C B . n B 1 35 G 35 35 35 G G B . n B 1 36 G 36 36 36 G G B . n B 1 37 G 37 37 37 G G B . n B 1 38 G 38 38 38 G G B . n B 1 39 U 39 39 39 U U B . n B 1 40 U 40 40 40 U U B . n B 1 41 C 41 41 41 C C B . n B 1 42 A 42 42 42 A A B . n B 1 43 A 43 43 43 A A B . n B 1 44 A 44 44 44 A A B . n B 1 45 U 45 45 45 U U B . n B 1 46 C 46 46 46 C C B . n B 1 47 C 47 47 47 C C B . n B 1 48 C 48 48 48 C C B . n B 1 49 U 49 49 49 U U B . n B 1 50 G 50 50 50 G G B . n B 1 51 C 51 51 51 C C B . n B 1 52 G 52 52 52 G G B . n B 1 53 G 53 53 53 G G B . n B 1 54 C 54 54 54 C C B . n B 1 55 G 55 55 55 G G B . n B 1 56 U 56 56 56 U U B . n B 1 57 C 57 57 57 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 101 2 NA NA A . D 2 NA 1 102 3 NA NA A . E 2 NA 1 103 4 NA NA A . F 2 NA 1 104 7 NA NA A . G 2 NA 1 105 10 NA NA A . H 2 NA 1 106 11 NA NA A . I 2 NA 1 107 12 NA NA A . J 2 NA 1 101 1 NA NA B . K 2 NA 1 102 5 NA NA B . L 2 NA 1 103 6 NA NA B . M 2 NA 1 104 8 NA NA B . N 2 NA 1 105 9 NA NA B . O 3 HOH 1 201 10 HOH HOH A . O 3 HOH 2 202 1 HOH HOH A . O 3 HOH 3 203 22 HOH HOH A . O 3 HOH 4 204 13 HOH HOH A . O 3 HOH 5 205 5 HOH HOH A . O 3 HOH 6 206 12 HOH HOH A . O 3 HOH 7 207 8 HOH HOH A . O 3 HOH 8 208 16 HOH HOH A . O 3 HOH 9 209 14 HOH HOH A . O 3 HOH 10 210 3 HOH HOH A . P 3 HOH 1 201 4 HOH HOH B . P 3 HOH 2 202 2 HOH HOH B . P 3 HOH 3 203 9 HOH HOH B . P 3 HOH 4 204 23 HOH HOH B . P 3 HOH 5 205 17 HOH HOH B . P 3 HOH 6 206 19 HOH HOH B . P 3 HOH 7 207 6 HOH HOH B . P 3 HOH 8 208 11 HOH HOH B . P 3 HOH 9 209 7 HOH HOH B . P 3 HOH 10 210 21 HOH HOH B . P 3 HOH 11 211 18 HOH HOH B . P 3 HOH 12 212 15 HOH HOH B . P 3 HOH 13 213 20 HOH HOH B . P 3 HOH 14 214 24 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 30 ? N9 ? B A 30 N9 2 1 Y 1 B A 30 ? C8 ? B A 30 C8 3 1 Y 1 B A 30 ? N7 ? B A 30 N7 4 1 Y 1 B A 30 ? C5 ? B A 30 C5 5 1 Y 1 B A 30 ? C6 ? B A 30 C6 6 1 Y 1 B A 30 ? N6 ? B A 30 N6 7 1 Y 1 B A 30 ? N1 ? B A 30 N1 8 1 Y 1 B A 30 ? C2 ? B A 30 C2 9 1 Y 1 B A 30 ? N3 ? B A 30 N3 10 1 Y 1 B A 30 ? C4 ? B A 30 C4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 105.730 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8K2Z _cell.details ? _cell.formula_units_Z ? _cell.length_a 79.365 _cell.length_a_esd ? _cell.length_b 30.111 _cell.length_b_esd ? _cell.length_c 89.353 _cell.length_c_esd ? _cell.volume 205535.386 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8K2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8K2Z _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Strontium chloride hexahydrate, 0.02 M Magnesium chloride hexahydrate, 18% v/v (+ / -)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-06-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97852 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97852 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 61.47 _reflns.entry_id 8K2Z _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 66.76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16486 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.46 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1215 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.497 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.783 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 92.72 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8K2Z _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 28.67 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16403 _refine.ls_number_reflns_R_free 789 _refine.ls_number_reflns_R_work 15614 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.30 _refine.ls_percent_reflns_R_free 4.81 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2775 _refine.ls_R_factor_R_free 0.2922 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2769 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.44 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.0100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4185 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 28.67 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 2356 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2320 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0052 ? 2587 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1493 ? 4029 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0453 ? 544 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0066 ? 108 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.3162 ? 1298 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 1.55368713387 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id A _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.40 2.55 . . 134 2560 99.19 . . . . 0.4099 . . . . . . . . . . . 0.4324 'X-RAY DIFFRACTION' 2.55 2.75 . . 144 2572 99.78 . . . . 0.3950 . . . . . . . . . . . 0.4095 'X-RAY DIFFRACTION' 2.75 3.02 . . 122 2569 98.86 . . . . 0.3167 . . . . . . . . . . . 0.3476 'X-RAY DIFFRACTION' 3.02 3.46 . . 134 2564 99.37 . . . . 0.2511 . . . . . . . . . . . 0.2834 'X-RAY DIFFRACTION' 3.46 4.35 . . 127 2622 99.42 . . . . 0.2354 . . . . . . . . . . . 0.2463 'X-RAY DIFFRACTION' 4.36 28.67 . . 128 2727 99.20 . . . . 0.2742 . . . . . . . . . . . 0.2802 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.997484263136 _struct_ncs_oper.matrix[1][2] 0.0464510229926 _struct_ncs_oper.matrix[1][3] 0.0535485504923 _struct_ncs_oper.matrix[2][1] -0.0433234327538 _struct_ncs_oper.matrix[2][2] -0.997366903553 _struct_ncs_oper.matrix[2][3] 0.0581578874386 _struct_ncs_oper.matrix[3][1] 0.0561090453609 _struct_ncs_oper.matrix[3][2] 0.0556916704708 _struct_ncs_oper.matrix[3][3] 0.996870208637 _struct_ncs_oper.vector[1] -1.03398972801 _struct_ncs_oper.vector[2] 10.3633177375 _struct_ncs_oper.vector[3] 1.24004614781 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 1 through 24 or (resid 30 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1")) or resid 31 through 57)) ; ens_1 d_2 ;chain "B" ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A G 1 . A C 5 . A G 1 A C 5 ? ? ens_1 d_2 1 B G 1 . B C 5 . B G 1 B C 5 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 8K2Z _struct.title 'Crystal structure of a human mascRNA A2G' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8K2Z _struct_keywords.text 'MascRNA, tRNA-like, MALAT1, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8K2Z _struct_ref.pdbx_db_accession 8K2Z _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8K2Z A 1 ? 57 ? 8K2Z 1 ? 57 ? 1 57 2 1 8K2Z B 1 ? 57 ? 8K2Z 1 ? 57 ? 1 57 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,O 2 1 B,J,K,L,M,N,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 2 O6 ? ? ? 1_555 H NA . NA ? ? A G 2 A NA 106 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc2 metalc ? ? A U 3 O4 ? ? ? 1_555 H NA . NA ? ? A U 3 A NA 106 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc3 metalc ? ? A G 7 OP1 ? ? ? 1_555 F NA . NA ? ? A G 7 A NA 104 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc4 metalc ? ? A G 14 OP1 ? ? ? 1_555 G NA . NA ? ? A G 14 A NA 105 1_555 ? ? ? ? ? ? ? 3.166 ? ? metalc5 metalc ? ? A G 37 O6 ? ? ? 1_555 I NA . NA ? ? A G 37 A NA 107 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc6 metalc ? ? A G 55 O6 ? ? ? 1_555 H NA . NA ? ? A G 55 A NA 106 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc7 metalc ? ? D NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 102 A HOH 203 1_555 ? ? ? ? ? ? ? 3.027 ? ? metalc8 metalc ? ? F NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 104 A HOH 208 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc9 metalc ? ? I NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 107 A HOH 203 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc10 metalc ? ? B U 40 O4 ? ? ? 1_555 J NA . NA ? ? B U 40 B NA 101 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc11 metalc ? ? B U 56 O4 ? ? ? 1_555 M NA . NA ? ? B U 56 B NA 104 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc12 metalc ? ? J NA . NA ? ? ? 1_555 P HOH . O ? ? B NA 101 B HOH 207 1_555 ? ? ? ? ? ? ? 2.641 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 1 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 56 O2 ? ? A G 2 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 56 N3 ? ? A G 2 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 55 N2 ? ? A U 3 A G 55 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 4 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 53 N1 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 53 O6 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 5 A G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 52 O6 ? ? A U 6 A G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 52 N1 ? ? A U 6 A G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 7 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 8 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 17 N1 ? ? A U 9 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 17 N6 ? ? A U 9 A A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 10 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 45 O2 ? ? A G 11 A U 45 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A U 45 O2 ? ? A U 12 A U 45 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 14 N1 ? ? ? 1_555 A U 40 O2 ? ? A G 14 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N4 ? ? ? 1_555 A A 44 N1 ? ? A C 16 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 19 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 19 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 20 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 21 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 30 N1 ? ? A U 22 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 22 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 24 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A G 24 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 24 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 24 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 24 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 24 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 35 N1 ? ? ? 1_555 A U 49 O2 ? ? A G 35 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog55 hydrog ? ? A G 35 O6 ? ? ? 1_555 A U 49 N3 ? ? A G 35 A U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 36 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 43 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog66 hydrog ? ? A U 39 O2 ? ? ? 1_555 A A 43 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 2 N1 ? ? ? 1_555 B U 56 O2 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? B G 2 O6 ? ? ? 1_555 B U 56 N3 ? ? B G 2 B U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? B U 3 N3 ? ? ? 1_555 B G 55 O6 ? ? B U 3 B G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? B U 3 O2 ? ? ? 1_555 B G 55 N1 ? ? B U 3 B G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 54 N3 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 54 O2 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 54 N4 ? ? B G 4 B C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 6 N3 ? ? ? 1_555 B G 52 O6 ? ? B U 6 B G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog81 hydrog ? ? B U 6 O2 ? ? ? 1_555 B G 52 N1 ? ? B U 6 B G 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 7 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 18 N3 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 18 O2 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 18 N4 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 9 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 17 N6 ? ? B U 9 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 10 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N1 ? ? ? 1_555 B A 44 N1 ? ? B G 11 B A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog94 hydrog ? ? B U 12 N3 ? ? ? 1_555 B U 45 O2 ? ? B U 12 B U 45 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog95 hydrog ? ? B G 14 N1 ? ? ? 1_555 B U 40 O2 ? ? B G 14 B U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog96 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 15 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 19 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 19 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 19 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 19 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 20 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 21 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 34 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 34 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 34 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 35 N1 ? ? ? 1_555 B U 49 O2 ? ? B G 35 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog111 hydrog ? ? B G 35 O6 ? ? ? 1_555 B U 49 N3 ? ? B G 35 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog112 hydrog ? ? B G 36 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 36 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 36 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 36 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 37 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 37 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 37 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 37 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 38 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 38 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 38 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 38 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B U 39 N3 ? ? ? 1_555 B A 43 N7 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog122 hydrog ? ? B U 39 O2 ? ? ? 1_555 B A 43 N6 ? ? B U 39 B A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 2 ? A G 2 ? 1_555 NA ? H NA . ? A NA 106 ? 1_555 O4 ? A U 3 ? A U 3 ? 1_555 81.6 ? 2 O6 ? A G 2 ? A G 2 ? 1_555 NA ? H NA . ? A NA 106 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 81.4 ? 3 O4 ? A U 3 ? A U 3 ? 1_555 NA ? H NA . ? A NA 106 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 72.2 ? 4 OP1 ? A G 7 ? A G 7 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? O HOH . ? A HOH 208 ? 1_555 108.1 ? 5 O6 ? A G 37 ? A G 37 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 124.0 ? 6 O4 ? B U 40 ? B U 40 ? 1_555 NA ? J NA . ? B NA 101 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 62.3 ? # _pdbx_entry_details.entry_id 8K2Z _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A C 34 ? ? O A HOH 201 ? ? 1.85 2 1 OP2 B A 42 ? ? O B HOH 201 ? ? 1.96 3 1 O B HOH 205 ? ? O B HOH 214 ? ? 1.99 4 1 "O3'" A C 57 ? ? O A HOH 202 ? ? 2.13 5 1 OP2 B U 40 ? ? O B HOH 202 ? ? 2.14 6 1 "O2'" B G 7 ? ? OP2 B C 34 ? ? 2.18 7 1 N7 B G 15 ? ? O B HOH 203 ? ? 2.18 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -24.2167514762 7.03402761847 -28.2870940431 0.786748320777 ? 0.55784081911 ? 0.0693849127077 ? 1.5537181989 ? 0.0291741126912 ? 0.789263779034 ? 1.0911161549 ? -0.814734567754 ? -0.219382986193 ? 1.49239166504 ? 0.580315916486 ? 0.239486017953 ? -0.0482968484981 ? 0.0194458070054 ? 0.198385933119 ? 0.18944529633 ? -0.179527242581 ? 0.0875642521218 ? 0.0990747908006 ? -0.579912021978 ? 0.21574823041 ? 2 'X-RAY DIFFRACTION' ? refined -28.3934841454 18.0652597786 -10.3746628093 1.85486378851 ? 0.472995817178 ? 0.387207326922 ? 2.55957487138 ? -0.489101144993 ? 1.09643111087 ? 0.127642261979 ? 0.195787751513 ? 0.751457398947 ? 2.25146586452 ? 0.365146508513 ? 4.74212314599 ? 0.816306422451 ? -0.738582306715 ? 0.661832118658 ? 1.55573412086 ? -0.572446112222 ? 1.44886253025 ? -0.282355146806 ? -1.92381210425 ? -0.186581462687 ? 3 'X-RAY DIFFRACTION' ? refined -19.5003561356 15.1760152377 -33.4655147557 0.501665090009 ? 0.683967802792 ? -0.00212292130218 ? 1.37150195658 ? 0.0806186819595 ? 0.67470868309 ? 1.28618559698 ? -1.23451824262 ? 0.163811793854 ? 1.29634330212 ? -0.00177665404035 ? 0.484171790844 ? 0.0550239154734 ? -0.0150326208075 ? -0.231755007987 ? -0.0263190807032 ? -0.079516465547 ? 0.289400155972 ? 0.0812624822486 ? -0.0109848459973 ? 0.00707609857587 ? 4 'X-RAY DIFFRACTION' ? refined 22.1511184871 2.43052466539 -27.5335903869 0.873809763892 ? 0.369719535195 ? -0.123042509852 ? 1.0310448164 ? 0.0295246485514 ? 0.68085682887 ? 4.71994575329 ? -1.14262863548 ? 0.504150723414 ? 2.312778661 ? 0.466242068512 ? 0.215384043051 ? -0.291318451639 ? -1.02998003309 ? 0.0322707651544 ? 0.714795467194 ? 0.760819880384 ? 0.0191873418793 ? -0.449426067898 ? -0.339841612064 ? -0.438984906908 ? 5 'X-RAY DIFFRACTION' ? refined 23.331156179 -8.26463208962 -12.5008398847 1.63840299541 ? 0.521121277648 ? -0.510907332298 ? 2.18455854259 ? 0.467949776646 ? 0.993416144527 ? 0.131470555725 ? 0.239725942732 ? 0.355248785052 ? 0.441965404063 ? 0.645376709749 ? 0.937382500417 ? 0.358285783348 ? -0.862448373891 ? -0.326297158513 ? 0.913499345486 ? -0.326443821533 ? -0.832813294039 ? 0.331141251352 ? 0.119087550879 ? -0.0618430912328 ? 6 'X-RAY DIFFRACTION' ? refined 17.0724872478 -5.53616121497 -32.7848689476 0.582214913358 ? 0.183386879138 ? 0.0206456817187 ? 0.47916490435 ? 0.0357031838477 ? 0.824148230169 ? 2.93488977999 ? -1.57621410764 ? -0.767239086606 ? 2.21608021112 ? 0.459738305207 ? 3.55613677996 ? -0.175633894561 ? -0.767321901787 ? -0.00322896007707 ? 0.643840308306 ? 0.588483221834 ? 0.653239400454 ? -0.00621272307932 ? 0.630977482372 ? -0.344862629596 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 20 ? ? ;chain 'A' and (resid 1 through 20 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 21 ? A ? A 35 ? ? ;chain 'A' and (resid 21 through 35 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 36 ? A ? A 57 ? ? ;chain 'A' and (resid 36 through 57 ) ; 4 'X-RAY DIFFRACTION' 4 B ? B 1 ? B ? B 20 ? ? ;chain 'B' and (resid 1 through 20 ) ; 5 'X-RAY DIFFRACTION' 5 B ? B 21 ? B ? B 35 ? ? ;chain 'B' and (resid 21 through 35 ) ; 6 'X-RAY DIFFRACTION' 6 B ? B 36 ? B ? B 57 ? ? ;chain 'B' and (resid 36 through 57 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 25 ? B U 25 2 1 Y 1 B U 26 ? B U 26 3 1 Y 1 B U 27 ? B U 27 4 1 Y 1 B C 28 ? B C 28 5 1 Y 1 B C 29 ? B C 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 NA NA NA N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8K2Z 'double helix' 8K2Z 'a-form double helix' 8K2Z 'parallel strands' 8K2Z 'bulge loop' 8K2Z 'mismatched base pair' 8K2Z 'internal loop' 8K2Z 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 12 1_555 A U 45 1_555 0.917 4.518 1.135 -29.990 16.312 126.690 1 A_U12:U45_A A 12 ? A 45 ? ? ? 1 A C 16 1_555 A G 10 1_555 0.160 -0.127 -0.408 8.629 -2.605 -1.206 2 A_C16:G10_A A 16 ? A 10 ? 19 1 1 A A 17 1_555 A U 9 1_555 -0.081 -0.176 -0.285 1.769 -4.574 1.220 3 A_A17:U9_A A 17 ? A 9 ? 20 1 1 A C 18 1_555 A G 8 1_555 0.181 -0.166 0.002 3.599 -2.396 1.479 4 A_C18:G8_A A 18 ? A 8 ? 19 1 1 A U 19 1_555 A A 33 1_555 -0.107 -0.103 0.333 -1.133 -5.252 3.470 5 A_U19:A33_A A 19 ? A 33 ? 20 1 1 A C 20 1_555 A G 32 1_555 0.153 -0.075 0.162 8.174 -5.034 3.362 6 A_C20:G32_A A 20 ? A 32 ? 19 1 1 A C 21 1_555 A G 31 1_555 0.187 -0.139 0.209 -3.260 -6.202 -0.356 7 A_C21:G31_A A 21 ? A 31 ? 19 1 1 A U 22 1_555 A A 30 1_555 -0.043 0.049 0.048 -5.580 -7.715 -6.489 8 A_U22:A30_A A 22 ? A 30 ? 20 1 1 A G 23 1_555 A C 29 1_555 -0.030 -0.087 -0.181 -4.438 1.560 -2.520 9 A_G23:C29_A A 23 ? A 29 ? 19 1 1 A G 24 1_555 A C 28 1_555 -0.169 -0.033 -0.136 3.485 -2.335 2.449 10 A_G24:C28_A A 24 ? A 28 ? 19 1 1 A G 14 1_555 A U 40 1_555 -0.860 5.548 -0.150 -24.399 -16.942 90.172 11 A_G14:U40_A A 14 ? A 40 ? ? 6 1 A A 43 1_555 A U 39 1_555 -3.944 -1.816 0.589 4.577 15.529 -106.070 12 A_A43:U39_A A 43 ? A 39 ? 24 4 1 A C 46 1_555 A G 38 1_555 0.128 -0.242 0.176 12.402 -8.645 1.993 13 A_C46:G38_A A 46 ? A 38 ? 19 1 1 A C 47 1_555 A G 37 1_555 0.214 -0.212 -0.052 6.043 -6.749 -1.593 14 A_C47:G37_A A 47 ? A 37 ? 19 1 1 A C 48 1_555 A G 36 1_555 0.147 -0.059 -0.103 4.379 -6.276 0.445 15 A_C48:G36_A A 48 ? A 36 ? 19 1 1 A U 49 1_555 A G 35 1_555 3.039 -0.829 -0.051 4.224 -11.565 -4.704 16 A_U49:G35_A A 49 ? A 35 ? 28 1 1 A G 50 1_555 A C 34 1_555 0.031 -0.183 0.085 -3.995 -2.148 0.177 17 A_G50:C34_A A 50 ? A 34 ? 19 1 1 A C 51 1_555 A G 7 1_555 0.195 -0.213 0.301 -2.522 -7.413 -0.752 18 A_C51:G7_A A 51 ? A 7 ? 19 1 1 A G 52 1_555 A U 6 1_555 -1.893 -0.341 0.112 6.473 -11.888 -0.540 19 A_G52:U6_A A 52 ? A 6 ? 28 1 1 A G 53 1_555 A C 5 1_555 -0.212 -0.058 0.328 1.295 -8.604 2.052 20 A_G53:C5_A A 53 ? A 5 ? 19 1 1 A C 54 1_555 A G 4 1_555 0.129 -0.138 0.346 0.217 -12.136 0.186 21 A_C54:G4_A A 54 ? A 4 ? 19 1 1 A G 55 1_555 A U 3 1_555 0.650 -0.282 0.088 1.437 -10.444 -4.003 22 A_G55:U3_A A 55 ? A 3 ? ? 1 1 A U 56 1_555 A G 2 1_555 1.999 -0.584 0.133 1.776 -9.816 1.312 23 A_U56:G2_A A 56 ? A 2 ? 28 1 1 A C 57 1_555 A G 1 1_555 0.227 -0.222 0.230 5.110 -6.219 -1.562 24 A_C57:G1_A A 57 ? A 1 ? 19 1 1 B G 1 1_555 B C 57 1_555 -0.206 -0.219 0.180 -7.419 -12.408 -1.492 25 B_G1:C57_B B 1 ? B 57 ? 19 1 1 B G 2 1_555 B U 56 1_555 -2.626 -0.843 0.339 2.781 -14.192 2.205 26 B_G2:U56_B B 2 ? B 56 ? 28 1 1 B U 3 1_555 B G 55 1_555 0.805 -0.544 -0.356 1.089 -9.199 -1.911 27 B_U3:G55_B B 3 ? B 55 ? 28 1 1 B G 4 1_555 B C 54 1_555 -0.171 -0.178 -0.339 -6.091 2.411 3.564 28 B_G4:C54_B B 4 ? B 54 ? 19 1 1 B C 5 1_555 B G 53 1_555 0.183 -0.075 -0.181 0.040 2.344 2.613 29 B_C5:G53_B B 5 ? B 53 ? 19 1 1 B U 6 1_555 B G 52 1_555 2.137 -0.427 0.388 -2.956 -12.970 5.849 30 B_U6:G52_B B 6 ? B 52 ? 28 1 1 B G 7 1_555 B C 51 1_555 -0.192 -0.172 0.374 5.113 -5.288 -1.182 31 B_G7:C51_B B 7 ? B 51 ? 19 1 1 B C 34 1_555 B G 50 1_555 0.146 -0.162 -0.002 3.166 -0.286 0.691 32 B_C34:G50_B B 34 ? B 50 ? 19 1 1 B G 35 1_555 B U 49 1_555 -2.839 -0.552 0.504 0.356 -10.037 9.370 33 B_G35:U49_B B 35 ? B 49 ? 28 1 1 B G 36 1_555 B C 48 1_555 -0.283 -0.222 -0.068 1.000 -3.890 -0.175 34 B_G36:C48_B B 36 ? B 48 ? 19 1 1 B G 37 1_555 B C 47 1_555 -0.290 -0.150 -0.023 -0.816 -9.479 -1.118 35 B_G37:C47_B B 37 ? B 47 ? 19 1 1 B G 38 1_555 B C 46 1_555 -0.224 -0.108 -0.199 -16.314 -8.900 2.912 36 B_G38:C46_B B 38 ? B 46 ? 19 1 1 B U 39 1_555 B A 43 1_555 4.242 -1.791 0.678 -4.508 15.993 -105.022 37 B_U39:A43_B B 39 ? B 43 ? 24 4 1 B U 40 1_555 B G 14 1_555 1.041 -5.192 -0.147 21.395 15.714 -91.799 38 B_U40:G14_B B 40 ? B 14 ? ? 6 1 A G 15 1_555 A C 41 1_555 -0.174 -0.277 0.089 -16.866 -15.856 -1.647 39 A_G15:C41_A A 15 ? A 41 ? 19 1 1 B G 31 1_555 B C 21 1_555 -0.150 -0.164 0.408 5.108 -9.254 -0.345 40 B_G31:C21_B B 31 ? B 21 ? 19 1 1 B G 32 1_555 B C 20 1_555 -0.192 -0.059 0.178 -11.779 -7.895 3.472 41 B_G32:C20_B B 32 ? B 20 ? 19 1 1 B A 33 1_555 B U 19 1_555 0.057 -0.113 0.260 -2.230 -0.173 2.348 42 B_A33:U19_B B 33 ? B 19 ? 20 1 1 B G 8 1_555 B C 18 1_555 -0.127 -0.162 0.091 -4.472 -5.316 -1.389 43 B_G8:C18_B B 8 ? B 18 ? 19 1 1 B U 9 1_555 B A 17 1_555 0.016 -0.090 -0.039 -2.886 -4.573 3.734 44 B_U9:A17_B B 9 ? B 17 ? 20 1 1 B G 10 1_555 B C 16 1_555 -0.130 -0.127 -0.233 -7.818 1.915 0.460 45 B_G10:C16_B B 10 ? B 16 ? 19 1 1 B G 11 1_555 B A 44 1_555 -1.939 1.344 -0.147 -27.425 -24.793 141.246 46 B_G11:A44_B B 11 ? B 44 ? ? 2 1 B U 12 1_555 B U 45 1_555 0.793 3.776 0.539 -41.213 11.246 117.522 47 B_U12:U45_B B 12 ? B 45 ? ? ? 1 B G 15 1_555 B C 41 1_555 -0.177 -0.228 0.084 -13.635 -12.739 0.701 48 B_G15:C41_B B 15 ? B 41 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 12 1_555 A U 45 1_555 A C 16 1_555 A G 10 1_555 -1.149 -4.693 -3.590 156.014 -5.167 82.004 -2.426 -0.945 -3.127 -2.718 -82.050 162.019 1 AA_U12C16:G10U45_AA A 12 ? A 45 ? A 16 ? A 10 ? 1 A C 16 1_555 A G 10 1_555 A A 17 1_555 A U 9 1_555 -0.225 -1.683 3.600 -2.469 9.220 28.494 -5.194 -0.087 2.934 18.100 4.847 30.019 2 AA_C16A17:U9G10_AA A 16 ? A 10 ? A 17 ? A 9 ? 1 A A 17 1_555 A U 9 1_555 A C 18 1_555 A G 8 1_555 0.468 -1.910 3.163 -3.976 1.352 34.494 -3.395 -1.360 3.017 2.270 6.674 34.741 3 AA_A17C18:G8U9_AA A 17 ? A 9 ? A 18 ? A 8 ? 1 A C 18 1_555 A G 8 1_555 A U 19 1_555 A A 33 1_555 1.160 -1.670 3.153 -0.440 6.531 40.457 -3.046 -1.702 2.848 9.370 0.632 40.962 4 AA_C18U19:A33G8_AA A 18 ? A 8 ? A 19 ? A 33 ? 1 A U 19 1_555 A A 33 1_555 A C 20 1_555 A G 32 1_555 -0.331 -1.714 2.918 -2.663 4.612 29.254 -4.170 0.167 2.642 9.037 5.218 29.724 5 AA_U19C20:G32A33_AA A 19 ? A 33 ? A 20 ? A 32 ? 1 A C 20 1_555 A G 32 1_555 A C 21 1_555 A G 31 1_555 -0.884 -2.502 3.316 -3.284 12.857 31.857 -5.997 1.040 2.246 22.255 5.684 34.444 6 AA_C20C21:G31G32_AA A 20 ? A 32 ? A 21 ? A 31 ? 1 A C 21 1_555 A G 31 1_555 A U 22 1_555 A A 30 1_555 -0.356 -1.647 3.146 1.120 4.198 31.860 -3.671 0.829 2.897 7.602 -2.029 32.147 7 AA_C21U22:A30G31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A U 22 1_555 A A 30 1_555 A G 23 1_555 A C 29 1_555 0.929 -1.517 3.342 3.713 6.149 34.638 -3.403 -0.984 3.116 10.192 -6.154 35.352 8 AA_U22G23:C29A30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A G 24 1_555 A C 28 1_555 -0.096 -1.184 3.003 -1.146 7.207 23.659 -4.660 -0.077 2.538 17.066 2.714 24.744 9 AA_G23G24:C28C29_AA A 23 ? A 29 ? A 24 ? A 28 ? 1 A G 14 1_555 A U 40 1_555 A A 43 1_555 A U 39 1_555 -1.272 -3.154 -3.163 163.436 -60.485 82.775 -1.996 -0.492 -2.166 -30.579 -82.628 175.702 10 AA_G14A43:U39U40_AA A 14 ? A 40 ? A 43 ? A 39 ? 1 A A 43 1_555 A U 39 1_555 A C 46 1_555 A G 38 1_555 2.572 -2.150 3.136 -5.863 1.903 87.289 -1.593 -1.978 2.956 1.377 4.243 87.462 11 AA_A43C46:G38U39_AA A 43 ? A 39 ? A 46 ? A 38 ? 1 A C 46 1_555 A G 38 1_555 A C 47 1_555 A G 37 1_555 -1.016 -2.017 3.130 -1.686 10.879 33.508 -4.743 1.461 2.424 18.267 2.830 35.221 12 AA_C46C47:G37G38_AA A 46 ? A 38 ? A 47 ? A 37 ? 1 A C 47 1_555 A G 37 1_555 A C 48 1_555 A G 36 1_555 -0.685 -2.094 3.260 -1.591 7.448 25.236 -6.415 1.114 2.584 16.571 3.540 26.342 13 AA_C47C48:G36G37_AA A 47 ? A 37 ? A 48 ? A 36 ? 1 A C 48 1_555 A G 36 1_555 A U 49 1_555 A G 35 1_555 0.158 -1.570 3.350 0.494 6.106 43.165 -2.698 -0.166 3.112 8.250 -0.667 43.577 14 AA_C48U49:G35G36_AA A 48 ? A 36 ? A 49 ? A 35 ? 1 A U 49 1_555 A G 35 1_555 A G 50 1_555 A C 34 1_555 0.104 -2.368 3.027 3.742 15.412 21.107 -8.083 0.472 1.078 36.202 -8.791 26.347 15 AA_U49G50:C34G35_AA A 49 ? A 35 ? A 50 ? A 34 ? 1 A G 50 1_555 A C 34 1_555 A C 51 1_555 A G 7 1_555 1.040 -1.369 3.240 -0.250 5.556 42.172 -2.430 -1.458 3.038 7.681 0.345 42.521 16 AA_G50C51:G7C34_AA A 50 ? A 34 ? A 51 ? A 7 ? 1 A C 51 1_555 A G 7 1_555 A G 52 1_555 A U 6 1_555 1.275 -2.495 2.651 -0.040 12.100 23.327 -7.550 -2.815 1.225 27.667 0.092 26.240 17 AA_C51G52:U6G7_AA A 51 ? A 7 ? A 52 ? A 6 ? 1 A G 52 1_555 A U 6 1_555 A G 53 1_555 A C 5 1_555 -1.055 -1.874 3.163 -6.873 4.254 36.205 -3.498 0.771 3.073 6.743 10.893 37.067 18 AA_G52G53:C5U6_AA A 52 ? A 6 ? A 53 ? A 5 ? 1 A G 53 1_555 A C 5 1_555 A C 54 1_555 A G 4 1_555 -0.380 -1.748 3.386 0.004 1.438 32.739 -3.351 0.675 3.308 2.549 -0.008 32.770 19 AA_G53C54:G4C5_AA A 53 ? A 5 ? A 54 ? A 4 ? 1 A C 54 1_555 A G 4 1_555 A G 55 1_555 A U 3 1_555 0.091 -1.695 2.920 3.630 14.511 32.745 -4.391 0.263 2.013 24.227 -6.060 35.914 20 AA_C54G55:U3G4_AA A 54 ? A 4 ? A 55 ? A 3 ? 1 A G 55 1_555 A U 3 1_555 A U 56 1_555 A G 2 1_555 0.279 -1.082 3.270 3.197 9.014 36.211 -2.832 -0.030 2.940 14.200 -5.036 37.412 21 AA_G55U56:G2U3_AA A 55 ? A 3 ? A 56 ? A 2 ? 1 A U 56 1_555 A G 2 1_555 A C 57 1_555 A G 1 1_555 0.198 -1.672 2.885 2.916 8.046 28.624 -4.613 0.112 2.346 15.832 -5.739 29.850 22 AA_U56C57:G1G2_AA A 56 ? A 2 ? A 57 ? A 1 ? 1 A C 57 1_555 A G 1 1_555 B G 1 1_555 B C 57 1_555 0.094 -4.572 3.444 1.028 7.379 -17.706 8.739 0.974 4.917 -22.711 3.165 -19.198 23 AB_C57G1:C57G1_BA A 57 ? A 1 ? B 1 ? B 57 ? 1 B G 1 1_555 B C 57 1_555 B G 2 1_555 B U 56 1_555 0.081 -1.737 2.727 -4.769 8.099 26.101 -5.103 -1.039 2.058 17.236 10.150 27.714 24 BB_G1G2:U56C57_BB B 1 ? B 57 ? B 2 ? B 56 ? 1 B G 2 1_555 B U 56 1_555 B U 3 1_555 B G 55 1_555 0.405 -0.807 3.397 2.621 5.514 45.514 -1.525 -0.286 3.300 7.089 -3.370 45.900 25 BB_G2U3:G55U56_BB B 2 ? B 56 ? B 3 ? B 55 ? 1 B U 3 1_555 B G 55 1_555 B G 4 1_555 B C 54 1_555 -0.246 -1.670 3.365 -1.505 13.012 30.139 -5.038 0.194 2.462 23.668 2.738 32.802 26 BB_U3G4:C54G55_BB B 3 ? B 55 ? B 4 ? B 54 ? 1 B G 4 1_555 B C 54 1_555 B C 5 1_555 B G 53 1_555 -0.069 -1.466 3.077 -0.315 9.944 32.674 -3.884 0.074 2.535 17.185 0.544 34.115 27 BB_G4C5:G53C54_BB B 4 ? B 54 ? B 5 ? B 53 ? 1 B C 5 1_555 B G 53 1_555 B U 6 1_555 B G 52 1_555 0.747 -1.615 3.217 2.697 9.762 39.049 -3.376 -0.800 2.794 14.313 -3.955 40.291 28 BB_C5U6:G52G53_BB B 5 ? B 53 ? B 6 ? B 52 ? 1 B U 6 1_555 B G 52 1_555 B G 7 1_555 B C 51 1_555 -1.398 -2.015 2.611 1.049 15.175 25.424 -5.966 2.879 1.186 31.175 -2.155 29.563 29 BB_U6G7:C51G52_BB B 6 ? B 52 ? B 7 ? B 51 ? 1 B G 7 1_555 B C 51 1_555 B C 34 1_555 B G 50 1_555 -0.890 -1.282 3.260 0.095 7.429 40.494 -2.600 1.277 2.987 10.626 -0.136 41.141 30 BB_G7C34:G50C51_BB B 7 ? B 51 ? B 34 ? B 50 ? 1 B C 34 1_555 B G 50 1_555 B G 35 1_555 B U 49 1_555 0.587 -2.596 2.811 -7.072 10.131 20.742 -8.345 -2.891 1.173 25.433 17.752 24.109 31 BB_C34G35:U49G50_BB B 34 ? B 50 ? B 35 ? B 49 ? 1 B G 35 1_555 B U 49 1_555 B G 36 1_555 B C 48 1_555 -1.273 -1.689 3.207 1.125 4.031 42.683 -2.692 1.848 3.010 5.523 -1.541 42.878 32 BB_G35G36:C48U49_BB B 35 ? B 49 ? B 36 ? B 48 ? 1 B G 36 1_555 B C 48 1_555 B G 37 1_555 B C 47 1_555 0.480 -2.045 3.235 0.375 10.429 28.293 -5.816 -0.856 2.356 20.475 -0.736 30.120 33 BB_G36G37:C47C48_BB B 36 ? B 48 ? B 37 ? B 47 ? 1 B G 37 1_555 B C 47 1_555 B G 38 1_555 B C 46 1_555 0.895 -2.418 3.499 4.405 7.957 30.969 -5.767 -0.829 2.901 14.513 -8.034 32.245 34 BB_G37G38:C46C47_BB B 37 ? B 47 ? B 38 ? B 46 ? 1 B G 38 1_555 B C 46 1_555 B U 39 1_555 B A 43 1_555 -2.761 -2.205 3.116 2.653 2.335 86.110 -1.663 2.077 2.998 1.710 -1.942 86.168 35 BB_G38U39:A43C46_BB B 38 ? B 46 ? B 39 ? B 43 ? 1 B U 39 1_555 B A 43 1_555 B U 40 1_555 B G 14 1_555 2.283 -2.365 3.287 5.915 0.894 42.171 -3.351 -2.520 3.512 1.235 -8.171 42.574 36 BB_U39U40:G14A43_BB B 39 ? B 43 ? B 40 ? B 14 ? 1 B G 31 1_555 B C 21 1_555 B G 32 1_555 B C 20 1_555 0.963 -2.469 3.356 5.551 13.917 33.877 -5.601 -0.838 2.323 22.564 -9.001 36.954 37 BB_G31G32:C20C21_BB B 31 ? B 21 ? B 32 ? B 20 ? 1 B G 32 1_555 B C 20 1_555 B A 33 1_555 B U 19 1_555 -0.210 -1.656 2.755 1.616 8.977 30.189 -4.339 0.618 2.171 16.761 -3.017 31.506 38 BB_G32A33:U19C20_BB B 32 ? B 20 ? B 33 ? B 19 ? 1 B A 33 1_555 B U 19 1_555 B G 8 1_555 B C 18 1_555 -1.300 -1.334 3.121 0.248 1.521 41.743 -2.023 1.849 3.065 2.133 -0.349 41.770 39 BB_A33G8:C18U19_BB B 33 ? B 19 ? B 8 ? B 18 ? 1 B G 8 1_555 B C 18 1_555 B U 9 1_555 B A 17 1_555 0.027 -1.922 3.183 1.708 0.762 33.191 -3.484 0.229 3.137 1.333 -2.987 33.243 40 BB_G8U9:A17C18_BB B 8 ? B 18 ? B 9 ? B 17 ? 1 B U 9 1_555 B A 17 1_555 B G 10 1_555 B C 16 1_555 0.132 -1.721 3.312 1.931 11.698 28.577 -5.309 0.095 2.439 22.512 -3.716 30.892 41 BB_U9G10:C16A17_BB B 9 ? B 17 ? B 10 ? B 16 ? 1 B G 10 1_555 B C 16 1_555 B G 11 1_555 B A 44 1_555 2.986 -0.437 2.884 12.465 18.045 -27.351 -1.317 6.389 1.448 -32.366 22.357 -34.927 42 BB_G10G11:A44C16_BB B 10 ? B 16 ? B 11 ? B 44 ? 1 B G 11 1_555 B A 44 1_555 B U 12 1_555 B U 45 1_555 0.059 -1.166 2.702 2.514 5.134 30.421 -2.978 0.278 2.473 9.676 -4.739 30.941 43 BB_G11U12:U45A44_BB B 11 ? B 44 ? B 12 ? B 45 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8K0Y _pdbx_initial_refinement_model.details 'Crystal structure of a medaka mascRNA U23G' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8K2Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012600 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003549 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033210 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011627 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #