HEADER TRANSCRIPTION 14-JUL-23 8K31 TITLE THE COMPLEX OF WRKY33 C TERMINAL DBD AND SIB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATSIBI,SIGMA FACTOR BINDING PROTEIN I,SIGA BINDING PROTEIN, COMPND 5 VQ MOTIF-CONTAINING PROTEIN 23,ATVQ23; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROBABLE WRKY TRANSCRIPTION FACTOR 33; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: WRKY DNA-BINDING PROTEIN 33; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SIB1, VQ23, AT3G56710, T8M16.40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: WRKY33, AT2G38470, T19C21.4; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, TRANSCRIPTIONAL FACTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.DONG,Z.GONG,Y.F.HU REVDAT 1 19-JUN-24 8K31 0 JRNL AUTH X.DONG,L.YU,Q.ZHANG,J.YANG,Z.GONG,X.NIU,H.LI,X.ZHANG,M.LIU, JRNL AUTH 2 C.JIN,Y.HU JRNL TITL STRUCTURAL BASIS FOR THE REGULATION OF PLANT TRANSCRIPTION JRNL TITL 2 FACTOR WRKY33 BY THE VQ PROTEIN SIB1. JRNL REF COMMUN BIOL V. 7 561 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38734744 JRNL DOI 10.1038/S42003-024-06258-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300039438. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 30 MM MES, 50 MM SODIUM REMARK 210 CHLORIDE, 20 UM ZINC ION, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, AMBER REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 240 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 LYS A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 VAL A 22 REMARK 465 SER A 23 REMARK 465 ARG A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 LYS A 28 REMARK 465 GLN A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 LYS A 32 REMARK 465 THR A 33 REMARK 465 THR A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 ASN A 37 REMARK 465 LYS A 38 REMARK 465 PRO A 39 REMARK 465 ILE A 40 REMARK 465 LYS A 41 REMARK 465 VAL A 42 REMARK 465 ARG A 43 REMARK 465 TYR A 44 REMARK 465 ILE A 45 REMARK 465 PRO A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 HIS A 86 REMARK 465 ASN A 87 REMARK 465 LEU A 88 REMARK 465 SER A 89 REMARK 465 PRO A 90 REMARK 465 PRO A 91 REMARK 465 ALA A 92 REMARK 465 GLU A 93 REMARK 465 ASN A 94 REMARK 465 LEU A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 97 REMARK 465 ARG A 98 REMARK 465 VAL A 99 REMARK 465 LEU A 100 REMARK 465 LEU A 101 REMARK 465 GLU A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 MET B 330 REMARK 465 ASP B 331 REMARK 465 ASN B 332 REMARK 465 GLU B 333 REMARK 465 THR B 334 REMARK 465 ASN B 335 REMARK 465 GLY B 336 REMARK 465 GLY B 337 REMARK 465 ASN B 338 REMARK 465 GLY B 339 REMARK 465 GLY B 340 REMARK 465 GLY B 341 REMARK 465 SER B 342 REMARK 465 ALA B 422 REMARK 465 LEU B 423 REMARK 465 GLU B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR B 385 CZ TYR B 385 CE2 0.079 REMARK 500 2 TYR B 412 CG TYR B 412 CD2 0.103 REMARK 500 3 GLY B 391 CA GLY B 391 C 0.117 REMARK 500 5 ARG B 406 NE ARG B 406 CZ -0.087 REMARK 500 6 ARG B 346 CZ ARG B 346 NH2 -0.086 REMARK 500 6 TYR B 385 CE1 TYR B 385 CZ 0.086 REMARK 500 7 HIS B 403 NE2 HIS B 403 CD2 -0.082 REMARK 500 8 ARG B 346 CZ ARG B 346 NH1 -0.092 REMARK 500 8 TYR B 370 CG TYR B 370 CD2 0.083 REMARK 500 8 ARG B 382 CZ ARG B 382 NH2 -0.099 REMARK 500 8 TYR B 385 CZ TYR B 385 CE2 0.101 REMARK 500 9 ARG A 59 CZ ARG A 59 NH2 -0.078 REMARK 500 9 TYR B 384 CG TYR B 384 CD2 0.084 REMARK 500 9 TYR B 412 CE1 TYR B 412 CZ 0.092 REMARK 500 11 GLY B 371 CA GLY B 371 C 0.099 REMARK 500 11 TYR B 385 CE1 TYR B 385 CZ 0.080 REMARK 500 11 HIS B 397 CG HIS B 397 CD2 0.057 REMARK 500 12 TYR B 370 CZ TYR B 370 CE2 0.083 REMARK 500 15 GLU A 64 CG GLU A 64 CD 0.093 REMARK 500 16 ARG A 50 CZ ARG A 50 NH1 -0.095 REMARK 500 16 TYR B 365 CZ TYR B 365 CE2 0.086 REMARK 500 16 ARG B 395 CZ ARG B 395 NH2 -0.082 REMARK 500 16 HIS B 418 CG HIS B 418 CD2 0.062 REMARK 500 18 SER B 356 CB SER B 356 OG 0.126 REMARK 500 18 TYR B 370 CE1 TYR B 370 CZ 0.088 REMARK 500 19 GLU A 64 CG GLU A 64 CD 0.097 REMARK 500 19 ARG B 368 CZ ARG B 368 NH1 -0.098 REMARK 500 19 ARG B 406 CZ ARG B 406 NH1 -0.080 REMARK 500 20 TYR B 370 CE1 TYR B 370 CZ 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 50 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 1 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 59 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 1 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ALA A 70 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 1 TYR A 79 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 TYR A 79 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 ASP B 362 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 TYR B 365 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 ARG B 366 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 ARG B 366 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 ARG B 368 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 1 ARG B 368 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 CYS B 387 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 1 THR B 388 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 1 ARG B 395 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG B 400 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ARG B 400 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 TYR B 412 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 1 TYR B 412 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 TYR B 412 CG - CD2 - CE2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ARG A 50 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 2 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 PHE A 58 CG - CD2 - CE2 ANGL. DEV. = -6.7 DEGREES REMARK 500 2 ARG A 59 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 2 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 GLN A 68 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 2 ASP A 69 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 2 ASP A 72 CB - CG - OD1 ANGL. DEV. = -11.2 DEGREES REMARK 500 2 ASP A 72 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 2 TYR A 79 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 2 TYR A 79 CG - CD1 - CE1 ANGL. DEV. = -4.9 DEGREES REMARK 500 2 ARG B 349 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG B 349 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 2 ASP B 362 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 ARG B 366 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 2 ARG B 368 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 ARG B 368 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 2 CYS B 376 CA - CB - SG ANGL. DEV. = -12.5 DEGREES REMARK 500 2 ASN B 378 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 2 TYR B 384 CZ - CE2 - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 2 TYR B 385 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 ARG B 395 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG B 406 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ASP A 69 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 3 ASP A 69 CB - CG - OD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 3 TYR A 79 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 3 VAL B 345 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 3 ARG B 349 NH1 - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 362 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 49 109.21 -42.57 REMARK 500 1 VAL A 51 -109.79 40.49 REMARK 500 1 SER A 56 152.55 -49.26 REMARK 500 1 GLN A 68 18.59 -67.02 REMARK 500 1 TYR A 79 158.94 -47.64 REMARK 500 1 ARG B 346 -34.43 -143.09 REMARK 500 1 ARG B 349 48.65 -142.69 REMARK 500 1 ILE B 350 94.96 -62.03 REMARK 500 1 ASN B 417 6.54 -64.20 REMARK 500 2 PRO A 75 172.15 -58.25 REMARK 500 2 PRO A 77 36.72 -80.31 REMARK 500 2 ARG B 349 42.82 -149.58 REMARK 500 2 ASP B 363 7.84 -154.53 REMARK 500 2 GLU B 413 3.36 -66.25 REMARK 500 3 PRO A 48 -169.35 -66.58 REMARK 500 3 ARG B 346 5.08 -60.20 REMARK 500 3 ARG B 349 33.52 -151.64 REMARK 500 3 ASP B 363 18.70 -143.47 REMARK 500 4 PRO A 48 158.36 -43.07 REMARK 500 4 LEU A 65 1.41 -61.97 REMARK 500 4 ASP A 69 60.54 69.46 REMARK 500 4 ARG B 346 22.20 -69.61 REMARK 500 4 ARG B 349 31.48 -149.96 REMARK 500 4 ASN B 417 39.09 -95.24 REMARK 500 5 GLN A 68 34.11 -87.98 REMARK 500 5 ARG B 346 21.79 -78.92 REMARK 500 5 ARG B 349 63.87 -151.13 REMARK 500 5 SER B 356 149.50 -173.10 REMARK 500 5 ASP B 363 13.69 -162.50 REMARK 500 5 TYR B 370 47.58 -140.03 REMARK 500 6 GLN A 68 49.45 -108.16 REMARK 500 6 ASP A 69 66.98 23.35 REMARK 500 6 ARG B 346 12.22 -157.55 REMARK 500 6 ASP B 359 28.65 -79.99 REMARK 500 6 ASP B 363 26.05 -149.15 REMARK 500 6 TYR B 370 -5.15 -142.73 REMARK 500 7 ALA A 55 7.99 -65.99 REMARK 500 7 ASP B 363 17.87 -140.55 REMARK 500 7 ALA B 401 157.91 -48.46 REMARK 500 7 GLU B 413 79.48 -100.76 REMARK 500 8 ARG A 50 33.43 -148.31 REMARK 500 8 ARG B 346 18.83 -142.10 REMARK 500 8 ARG B 349 44.54 -155.08 REMARK 500 8 ASP B 359 22.61 -73.61 REMARK 500 8 ASN B 417 40.62 -74.86 REMARK 500 9 PRO A 48 175.46 -56.58 REMARK 500 9 GLN A 68 36.06 -74.85 REMARK 500 9 ALA A 70 17.22 -142.06 REMARK 500 9 ASP A 72 163.24 -38.32 REMARK 500 9 ASP B 363 14.73 -145.68 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 394 ARG B 395 5 149.99 REMARK 500 PRO B 381 ARG B 382 7 143.99 REMARK 500 ASP A 72 LEU A 73 9 -149.23 REMARK 500 TRP B 367 ARG B 368 11 147.48 REMARK 500 LEU B 361 ASP B 362 12 150.00 REMARK 500 PRO B 348 ARG B 349 13 -146.81 REMARK 500 PRO B 381 ARG B 382 20 143.48 REMARK 500 LYS B 396 HIS B 397 20 145.34 REMARK 500 TYR B 412 GLU B 413 20 141.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 58 0.07 SIDE CHAIN REMARK 500 1 TYR B 385 0.07 SIDE CHAIN REMARK 500 1 HIS B 416 0.11 SIDE CHAIN REMARK 500 2 TYR A 79 0.07 SIDE CHAIN REMARK 500 2 TYR B 365 0.10 SIDE CHAIN REMARK 500 2 ARG B 400 0.13 SIDE CHAIN REMARK 500 2 ARG B 406 0.08 SIDE CHAIN REMARK 500 3 ARG B 366 0.10 SIDE CHAIN REMARK 500 3 ARG B 400 0.10 SIDE CHAIN REMARK 500 3 ARG B 406 0.10 SIDE CHAIN REMARK 500 3 TYR B 412 0.08 SIDE CHAIN REMARK 500 4 TYR B 370 0.07 SIDE CHAIN REMARK 500 4 TYR B 385 0.09 SIDE CHAIN REMARK 500 4 ARG B 406 0.10 SIDE CHAIN REMARK 500 4 TYR B 412 0.08 SIDE CHAIN REMARK 500 5 TYR B 370 0.07 SIDE CHAIN REMARK 500 5 ARG B 400 0.11 SIDE CHAIN REMARK 500 6 HIS B 397 0.07 SIDE CHAIN REMARK 500 6 ARG B 400 0.09 SIDE CHAIN REMARK 500 6 TYR B 412 0.10 SIDE CHAIN REMARK 500 8 ARG B 368 0.07 SIDE CHAIN REMARK 500 8 ARG B 400 0.17 SIDE CHAIN REMARK 500 8 HIS B 418 0.06 SIDE CHAIN REMARK 500 9 TYR A 79 0.09 SIDE CHAIN REMARK 500 9 ARG B 382 0.10 SIDE CHAIN REMARK 500 9 HIS B 397 0.07 SIDE CHAIN REMARK 500 9 ARG B 400 0.11 SIDE CHAIN REMARK 500 9 TYR B 412 0.06 SIDE CHAIN REMARK 500 9 HIS B 416 0.11 SIDE CHAIN REMARK 500 10 ARG A 59 0.11 SIDE CHAIN REMARK 500 10 TYR A 79 0.13 SIDE CHAIN REMARK 500 10 ARG B 346 0.07 SIDE CHAIN REMARK 500 10 TYR B 385 0.08 SIDE CHAIN REMARK 500 10 HIS B 416 0.10 SIDE CHAIN REMARK 500 11 ARG B 382 0.10 SIDE CHAIN REMARK 500 12 TYR A 79 0.07 SIDE CHAIN REMARK 500 12 ARG B 406 0.10 SIDE CHAIN REMARK 500 13 TYR B 384 0.09 SIDE CHAIN REMARK 500 14 TYR A 79 0.11 SIDE CHAIN REMARK 500 14 ARG B 368 0.09 SIDE CHAIN REMARK 500 15 ARG A 59 0.12 SIDE CHAIN REMARK 500 15 TYR A 79 0.09 SIDE CHAIN REMARK 500 15 TYR B 385 0.14 SIDE CHAIN REMARK 500 15 ARG B 395 0.10 SIDE CHAIN REMARK 500 16 ARG A 50 0.08 SIDE CHAIN REMARK 500 16 TYR B 370 0.07 SIDE CHAIN REMARK 500 16 TYR B 385 0.08 SIDE CHAIN REMARK 500 16 ARG B 406 0.09 SIDE CHAIN REMARK 500 17 PHE A 58 0.13 SIDE CHAIN REMARK 500 17 HIS B 397 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 61 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 2 TRP B 367 -10.42 REMARK 500 2 PRO B 381 -11.55 REMARK 500 4 CYS B 357 -10.50 REMARK 500 8 LYS B 343 -12.27 REMARK 500 10 TYR A 79 10.62 REMARK 500 17 LEU A 61 -10.83 REMARK 500 18 LYS B 396 -10.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 387 SG REMARK 620 2 CYS B 392 SG 112.2 REMARK 620 3 HIS B 416 ND1 112.1 109.4 REMARK 620 4 HIS B 418 NE2 114.4 103.1 105.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50583 RELATED DB: BMRB DBREF 8K31 A 11 100 UNP Q9LDH1 SIB1_ARATH 11 100 DBREF 8K31 B 331 422 UNP Q8S8P5 WRK33_ARATH 331 422 SEQADV 8K31 MET A 10 UNP Q9LDH1 INITIATING METHIONINE SEQADV 8K31 LEU A 101 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 GLU A 102 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 HIS A 103 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 HIS A 104 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 HIS A 105 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 HIS A 106 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 HIS A 107 UNP Q9LDH1 EXPRESSION TAG SEQADV 8K31 MET B 330 UNP Q8S8P5 INITIATING METHIONINE SEQADV 8K31 CYS B 357 UNP Q8S8P5 ASP 357 ENGINEERED MUTATION SEQADV 8K31 CYS B 376 UNP Q8S8P5 LYS 376 ENGINEERED MUTATION SEQADV 8K31 LEU B 423 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 GLU B 424 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 425 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 426 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 427 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 428 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 429 UNP Q8S8P5 EXPRESSION TAG SEQADV 8K31 HIS B 430 UNP Q8S8P5 EXPRESSION TAG SEQRES 1 A 98 MET THR THR SER LEU ASP LYS LYS LYS PRO SER PRO VAL SEQRES 2 A 98 SER ARG LYS SER PRO LYS GLN LYS LYS LYS THR THR SER SEQRES 3 A 98 THR ASN LYS PRO ILE LYS VAL ARG TYR ILE SER ASN PRO SEQRES 4 A 98 MET ARG VAL GLN THR CYS ALA SER LYS PHE ARG GLU LEU SEQRES 5 A 98 VAL GLN GLU LEU THR GLY GLN ASP ALA VAL ASP LEU GLN SEQRES 6 A 98 PRO GLU PRO ILE TYR SER PRO SER SER ASP ASP HIS ASN SEQRES 7 A 98 LEU SER PRO PRO ALA GLU ASN LEU ALA PRO ARG VAL LEU SEQRES 8 A 98 LEU GLU HIS HIS HIS HIS HIS SEQRES 1 B 101 MET ASP ASN GLU THR ASN GLY GLY ASN GLY GLY GLY SER SEQRES 2 B 101 LYS THR VAL ARG GLU PRO ARG ILE VAL VAL GLN THR THR SEQRES 3 B 101 SER CYS ILE ASP ILE LEU ASP ASP GLY TYR ARG TRP ARG SEQRES 4 B 101 LYS TYR GLY GLN LYS VAL VAL CYS GLY ASN PRO ASN PRO SEQRES 5 B 101 ARG SER TYR TYR LYS CYS THR THR ILE GLY CYS PRO VAL SEQRES 6 B 101 ARG LYS HIS VAL GLU ARG ALA SER HIS ASP MET ARG ALA SEQRES 7 B 101 VAL ILE THR THR TYR GLU GLY LYS HIS ASN HIS ASP VAL SEQRES 8 B 101 PRO ALA LEU GLU HIS HIS HIS HIS HIS HIS HET ZN B 501 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 ARG B 346 ARG B 349 5 4 SHEET 1 AA1 5 ILE B 350 THR B 355 0 SHEET 2 AA1 5 ALA B 407 GLU B 413 -1 O TYR B 412 N ILE B 350 SHEET 3 AA1 5 ARG B 395 ARG B 400 -1 N HIS B 397 O THR B 411 SHEET 4 AA1 5 ARG B 382 CYS B 387 -1 N TYR B 385 O LYS B 396 SHEET 5 AA1 5 TRP B 367 LYS B 373 -1 N LYS B 373 O ARG B 382 LINK SG CYS B 387 ZN ZN B 501 1555 1555 2.24 LINK SG CYS B 392 ZN ZN B 501 1555 1555 2.29 LINK ND1 HIS B 416 ZN ZN B 501 1555 1555 2.01 LINK NE2 HIS B 418 ZN ZN B 501 1555 1555 1.99 CISPEP 1 ASP A 69 ALA A 70 1 7.12 CISPEP 2 ASP A 69 ALA A 70 2 11.73 CISPEP 3 ASP A 69 ALA A 70 3 -21.08 CISPEP 4 ASP A 69 ALA A 70 4 -20.68 CISPEP 5 ASP A 69 ALA A 70 5 5.93 CISPEP 6 ASP A 69 ALA A 70 6 9.37 CISPEP 7 ASP A 69 ALA A 70 7 -14.83 CISPEP 8 ASP A 69 ALA A 70 8 -1.03 CISPEP 9 ASP A 69 ALA A 70 9 25.76 CISPEP 10 ASP A 69 ALA A 70 10 8.14 CISPEP 11 ASP A 69 ALA A 70 11 8.37 CISPEP 12 ASP A 69 ALA A 70 12 26.03 CISPEP 13 ASP A 69 ALA A 70 13 -0.58 CISPEP 14 ASP A 69 ALA A 70 14 -12.43 CISPEP 15 ASP A 69 ALA A 70 15 -15.98 CISPEP 16 ASP A 69 ALA A 70 16 -20.50 CISPEP 17 ASP A 69 ALA A 70 17 -14.70 CISPEP 18 ASP A 69 ALA A 70 18 12.08 CISPEP 19 ASP A 69 ALA A 70 19 -4.06 CISPEP 20 ASP A 69 ALA A 70 20 -6.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1