HEADER ELECTRON TRANSPORT 25-JUL-23 8K65 TITLE SERIAL FEMTOSECOND CRYSTALLOGRAPHY STRUCTURE OF CO BOUND BA3- TYPE TITLE 2 CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME C BA(3) SUBUNIT I,CYTOCHROME C OXIDASE COMPND 5 POLYPEPTIDE I,CYTOCHROME CBA3 SUBUNIT 1; COMPND 6 EC: 7.1.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CYTOCHROME C BA(3) SUBUNIT II,CYTOCHROME C OXIDASE COMPND 12 POLYPEPTIDE II,CYTOCHROME CBA3 SUBUNIT 2; COMPND 13 EC: 7.1.1.9; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: CYTOCHROME C OXIDASE POLYPEPTIDE 2A; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: CYTOCHROME C BA(3) SUBUNIT IIA,CYTOCHROME C OXIDASE COMPND 19 POLYPEPTIDE IIA,CYTOCHROME CBA3 SUBUNIT 2A; COMPND 20 EC: 7.1.1.9; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 GENE: CBAA, TTHA1135; SOURCE 5 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS HB8; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 300852; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 9 ORGANISM_TAXID: 300852; SOURCE 10 GENE: CBAB, CTAC, TTHA1134; SOURCE 11 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS HB8; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 300852; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 15 ORGANISM_TAXID: 300852; SOURCE 16 GENE: CBAD, TTHA1133; SOURCE 17 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS HB8; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 300852 KEYWDS MEMBRANE PROTEINS, STRUCTURAL DYNAMICS, SERIAL FEMTOSECOND KEYWDS 2 CRYSTALLOGRAPHY, TIME-RESOLVED STUDIES, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.SAFARI,S.GHOSH,R.ANDERSSON,J.JOHANNESSON,A.V.DONOSO,P.BATH,D.ZORIC, AUTHOR 2 E.SANDELIN,E.NANGO,R.TANAKA,S.IWATA,R.NEUTZE,G.BRANDEN REVDAT 2 20-MAR-24 8K65 1 JRNL REVDAT 1 15-NOV-23 8K65 0 JRNL AUTH C.SAFARI,S.GHOSH,R.ANDERSSON,J.JOHANNESSON,P.BATH,O.UWANGUE, JRNL AUTH 2 P.DAHL,D.ZORIC,E.SANDELIN,A.VALLEJOS,E.NANGO,R.TANAKA, JRNL AUTH 3 R.BOSMAN,P.BORJESSON,E.DUNEVALL,G.HAMMARIN,G.ORTOLANI, JRNL AUTH 4 M.PANMAN,T.TANAKA,A.YAMASHITA,T.ARIMA,M.SUGAHARA,M.SUZUKI, JRNL AUTH 5 T.MASUDA,H.TAKEDA,R.YAMAGIWA,K.ODA,M.FUKUDA,T.TOSHA, JRNL AUTH 6 H.NAITOW,S.OWADA,K.TONO,O.NUREKI,S.IWATA,R.NEUTZE,G.BRANDEN JRNL TITL TIME-RESOLVED SERIAL CRYSTALLOGRAPHY TO TRACK THE DYNAMICS JRNL TITL 2 OF CARBON MONOXIDE IN THE ACTIVE SITE OF CYTOCHROME C JRNL TITL 3 OXIDASE. JRNL REF SCI ADV V. 9 H4179 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 38064560 JRNL DOI 10.1126/SCIADV.ADH4179 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC V8.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.017 REMARK 3 FREE R VALUE TEST SET COUNT : 3773 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 386 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11900 REMARK 3 B22 (A**2) : -1.13300 REMARK 3 B33 (A**2) : 0.12500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8K65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300039613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL3 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL3 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 233.9 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34-38 % PEG 400 (V/V), 1.4 M NACL, PH REMARK 280 5.3, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.92500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.92500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 748 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 373 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 376 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 311 O HOH B 354 1.41 REMARK 500 NE2 HIS A 233 CE2 TYR A 237 1.44 REMARK 500 O HOH B 302 O HOH B 367 1.45 REMARK 500 O HOH B 312 O HOH B 339 1.55 REMARK 500 O HOH B 362 O HOH B 386 1.72 REMARK 500 O HOH A 704 O HOH B 341 1.72 REMARK 500 O HOH B 303 O HOH B 366 1.82 REMARK 500 O HOH B 364 O HOH B 384 1.92 REMARK 500 FE HAS A 603 C CMO A 614 1.93 REMARK 500 O HOH A 782 O HOH A 789 1.95 REMARK 500 O HOH B 378 O HOH B 385 2.05 REMARK 500 NE2 GLN B 91 O HOH B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 104.27 -56.38 REMARK 500 ASN A 127 36.53 70.78 REMARK 500 ALA A 129 52.66 -149.32 REMARK 500 LEU A 132 171.11 69.00 REMARK 500 PHE A 135 56.70 36.05 REMARK 500 PHE A 207 -64.14 -126.24 REMARK 500 PRO A 278 40.60 -82.27 REMARK 500 SER A 368 42.73 -89.72 REMARK 500 PHE A 369 -96.48 51.00 REMARK 500 GLN A 388 -63.67 -90.42 REMARK 500 SER A 391 -76.24 -108.93 REMARK 500 ASP B 3 -71.71 -26.74 REMARK 500 ASP B 111 -90.50 -135.93 REMARK 500 ASN B 124 87.58 -161.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 797 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 388 DISTANCE = 6.12 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 604 REMARK 610 OLC A 605 REMARK 610 OLC A 606 REMARK 610 OLC A 607 REMARK 610 OLC A 608 REMARK 610 OLC A 609 REMARK 610 OLC A 610 REMARK 610 OLC A 611 REMARK 610 OLC A 612 REMARK 610 OLC A 613 REMARK 610 OLC B 201 REMARK 610 OLC B 204 REMARK 610 OLC C 101 REMARK 610 OLC C 102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 72 NE2 REMARK 620 2 HEM A 602 NA 91.2 REMARK 620 3 HEM A 602 NB 91.5 87.1 REMARK 620 4 HEM A 602 NC 88.0 176.5 89.5 REMARK 620 5 HEM A 602 ND 87.9 90.6 177.6 92.8 REMARK 620 6 HIS A 386 NE2 177.9 87.0 89.5 93.8 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 233 ND1 REMARK 620 2 HIS A 282 NE2 99.6 REMARK 620 3 HIS A 283 NE2 145.3 89.6 REMARK 620 4 CMO A 614 O 88.3 136.9 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HAS A 603 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 384 NE2 REMARK 620 2 HAS A 603 NA 91.6 REMARK 620 3 HAS A 603 NB 97.7 170.6 REMARK 620 4 HAS A 603 NC 95.9 88.0 89.7 REMARK 620 5 HAS A 603 ND 95.1 89.0 91.5 168.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUA B 202 CU2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 ND1 REMARK 620 2 CUA B 202 CU1 141.3 REMARK 620 3 CYS B 149 SG 124.8 55.9 REMARK 620 4 CYS B 153 SG 104.4 55.5 111.1 REMARK 620 5 MET B 160 SD 92.8 124.2 111.5 110.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUA B 202 CU1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 149 SG REMARK 620 2 CUA B 202 CU2 56.9 REMARK 620 3 GLN B 151 O 85.4 107.0 REMARK 620 4 CYS B 153 SG 114.1 57.6 107.5 REMARK 620 5 HIS B 157 ND1 122.1 160.6 91.8 121.7 REMARK 620 N 1 2 3 4 DBREF 8K65 A 2 562 UNP Q5SJ79 COX1_THET8 2 562 DBREF 8K65 B 1 168 UNP Q5SJ80 COX2_THET8 1 168 DBREF 8K65 C 1 34 UNP P82543 COXA_THET8 1 34 SEQADV 8K65 MET A -6 UNP Q5SJ79 INITIATING METHIONINE SEQADV 8K65 HIS A -5 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A -4 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A -3 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A -2 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A -1 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A 0 UNP Q5SJ79 EXPRESSION TAG SEQADV 8K65 HIS A 1 UNP Q5SJ79 EXPRESSION TAG SEQRES 1 A 569 MET HIS HIS HIS HIS HIS HIS HIS ALA VAL ARG ALA SER SEQRES 2 A 569 GLU ILE SER ARG VAL TYR GLU ALA TYR PRO GLU LYS LYS SEQRES 3 A 569 ALA THR LEU TYR PHE LEU VAL LEU GLY PHE LEU ALA LEU SEQRES 4 A 569 ILE VAL GLY SER LEU PHE GLY PRO PHE GLN ALA LEU ASN SEQRES 5 A 569 TYR GLY ASN VAL ASP ALA TYR PRO LEU LEU LYS ARG LEU SEQRES 6 A 569 LEU PRO PHE VAL GLN SER TYR TYR GLN GLY LEU THR LEU SEQRES 7 A 569 HIS GLY VAL LEU ASN ALA ILE VAL PHE THR GLN LEU PHE SEQRES 8 A 569 ALA GLN ALA ILE MET VAL TYR LEU PRO ALA ARG GLU LEU SEQRES 9 A 569 ASN MET ARG PRO ASN MET GLY LEU MET TRP LEU SER TRP SEQRES 10 A 569 TRP MET ALA PHE ILE GLY LEU VAL VAL ALA ALA LEU PRO SEQRES 11 A 569 LEU LEU ALA ASN GLU ALA THR VAL LEU TYR THR PHE TYR SEQRES 12 A 569 PRO PRO LEU LYS GLY HIS TRP ALA PHE TYR LEU GLY ALA SEQRES 13 A 569 SER VAL PHE VAL LEU SER THR TRP VAL SER ILE TYR ILE SEQRES 14 A 569 VAL LEU ASP LEU TRP ARG ARG TRP LYS ALA ALA ASN PRO SEQRES 15 A 569 GLY LYS VAL THR PRO LEU VAL THR TYR MET ALA VAL VAL SEQRES 16 A 569 PHE TRP LEU MET TRP PHE LEU ALA SER LEU GLY LEU VAL SEQRES 17 A 569 LEU GLU ALA VAL LEU PHE LEU LEU PRO TRP SER PHE GLY SEQRES 18 A 569 LEU VAL GLU GLY VAL ASP PRO LEU VAL ALA ARG THR LEU SEQRES 19 A 569 PHE TRP TRP THR GLY HIS PRO ILE VAL TYR PHE TRP LEU SEQRES 20 A 569 LEU PRO ALA TYR ALA ILE ILE TYR THR ILE LEU PRO LYS SEQRES 21 A 569 GLN ALA GLY GLY LYS LEU VAL SER ASP PRO MET ALA ARG SEQRES 22 A 569 LEU ALA PHE LEU LEU PHE LEU LEU LEU SER THR PRO VAL SEQRES 23 A 569 GLY PHE HIS HIS GLN PHE ALA ASP PRO GLY ILE ASP PRO SEQRES 24 A 569 THR TRP LYS MET ILE HIS SER VAL LEU THR LEU PHE VAL SEQRES 25 A 569 ALA VAL PRO SER LEU MET THR ALA PHE THR VAL ALA ALA SEQRES 26 A 569 SER LEU GLU PHE ALA GLY ARG LEU ARG GLY GLY ARG GLY SEQRES 27 A 569 LEU PHE GLY TRP ILE ARG ALA LEU PRO TRP ASP ASN PRO SEQRES 28 A 569 ALA PHE VAL ALA PRO VAL LEU GLY LEU LEU GLY PHE ILE SEQRES 29 A 569 PRO GLY GLY ALA GLY GLY ILE VAL ASN ALA SER PHE THR SEQRES 30 A 569 LEU ASP TYR VAL VAL HIS ASN THR ALA TRP VAL PRO GLY SEQRES 31 A 569 HIS PHE HIS LEU GLN VAL ALA SER LEU VAL THR LEU THR SEQRES 32 A 569 ALA MET GLY SER LEU TYR TRP LEU LEU PRO ASN LEU THR SEQRES 33 A 569 GLY LYS PRO ILE SER ASP ALA GLN ARG ARG LEU GLY LEU SEQRES 34 A 569 ALA VAL VAL TRP LEU TRP PHE LEU GLY MET MET ILE MET SEQRES 35 A 569 ALA VAL GLY LEU HIS TRP ALA GLY LEU LEU ASN VAL PRO SEQRES 36 A 569 ARG ARG ALA TYR ILE ALA GLN VAL PRO ASP ALA TYR PRO SEQRES 37 A 569 HIS ALA ALA VAL PRO MET VAL PHE ASN VAL LEU ALA GLY SEQRES 38 A 569 ILE VAL LEU LEU VAL ALA LEU LEU LEU PHE ILE TYR GLY SEQRES 39 A 569 LEU PHE SER VAL LEU LEU SER ARG GLU ARG LYS PRO GLU SEQRES 40 A 569 LEU ALA GLU ALA PRO LEU PRO PHE ALA GLU VAL ILE SER SEQRES 41 A 569 GLY PRO GLU ASP ARG ARG LEU VAL LEU ALA MET ASP ARG SEQRES 42 A 569 ILE GLY PHE TRP PHE ALA VAL ALA ALA ILE LEU VAL VAL SEQRES 43 A 569 LEU ALA TYR GLY PRO THR LEU VAL GLN LEU PHE GLY HIS SEQRES 44 A 569 LEU ASN PRO VAL PRO GLY TRP ARG LEU TRP SEQRES 1 B 168 MET VAL ASP GLU HIS LYS ALA HIS LYS ALA ILE LEU ALA SEQRES 2 B 168 TYR GLU LYS GLY TRP LEU ALA PHE SER LEU ALA MET LEU SEQRES 3 B 168 PHE VAL PHE ILE ALA LEU ILE ALA TYR THR LEU ALA THR SEQRES 4 B 168 HIS THR ALA GLY VAL ILE PRO ALA GLY LYS LEU GLU ARG SEQRES 5 B 168 VAL ASP PRO THR THR VAL ARG GLN GLU GLY PRO TRP ALA SEQRES 6 B 168 ASP PRO ALA GLN ALA VAL VAL GLN THR GLY PRO ASN GLN SEQRES 7 B 168 TYR THR VAL TYR VAL LEU ALA PHE ALA PHE GLY TYR GLN SEQRES 8 B 168 PRO ASN PRO ILE GLU VAL PRO GLN GLY ALA GLU ILE VAL SEQRES 9 B 168 PHE LYS ILE THR SER PRO ASP VAL ILE HIS GLY PHE HIS SEQRES 10 B 168 VAL GLU GLY THR ASN ILE ASN VAL GLU VAL LEU PRO GLY SEQRES 11 B 168 GLU VAL SER THR VAL ARG TYR THR PHE LYS ARG PRO GLY SEQRES 12 B 168 GLU TYR ARG ILE ILE CYS ASN GLN TYR CYS GLY LEU GLY SEQRES 13 B 168 HIS GLN ASN MET PHE GLY THR ILE VAL VAL LYS GLU SEQRES 1 C 34 MET GLU GLU LYS PRO LYS GLY ALA LEU ALA VAL ILE LEU SEQRES 2 C 34 VAL LEU THR LEU THR ILE LEU VAL PHE TRP LEU GLY VAL SEQRES 3 C 34 TYR ALA VAL PHE PHE ALA ARG GLY HET CU A 601 1 HET HEM A 602 43 HET HAS A 603 65 HET OLC A 604 23 HET OLC A 605 18 HET OLC A 606 17 HET OLC A 607 15 HET OLC A 608 18 HET OLC A 609 15 HET OLC A 610 20 HET OLC A 611 21 HET OLC A 612 9 HET OLC A 613 9 HET CMO A 614 2 HET OLC B 201 20 HET CUA B 202 2 HET OLC B 203 25 HET OLC B 204 24 HET OLC C 101 24 HET OLC C 102 15 HETNAM CU COPPER (II) ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM HAS HEME-AS HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM CMO CARBON MONOXIDE HETNAM CUA DINUCLEAR COPPER ION HETSYN HEM HEME HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 4 CU CU 2+ FORMUL 5 HEM C34 H32 FE N4 O4 FORMUL 6 HAS C54 H64 FE N4 O6 FORMUL 7 OLC 15(C21 H40 O4) FORMUL 17 CMO C O FORMUL 19 CUA CU2 FORMUL 24 HOH *190(H2 O) HELIX 1 AA1 SER A 9 TYR A 15 1 7 HELIX 2 AA2 TYR A 15 LEU A 37 1 23 HELIX 3 AA3 PHE A 38 TYR A 46 1 9 HELIX 4 AA4 ALA A 51 LEU A 59 1 9 HELIX 5 AA5 SER A 64 ILE A 78 1 15 HELIX 6 AA6 ILE A 78 ASN A 98 1 21 HELIX 7 AA7 ASN A 102 ALA A 126 1 25 HELIX 8 AA8 HIS A 142 ASN A 174 1 33 HELIX 9 AA9 PRO A 180 PHE A 207 1 28 HELIX 10 AB1 PHE A 207 PHE A 213 1 7 HELIX 11 AB2 ASP A 220 HIS A 233 1 14 HELIX 12 AB3 HIS A 233 ILE A 250 1 18 HELIX 13 AB4 ILE A 250 ALA A 255 1 6 HELIX 14 AB5 SER A 261 SER A 276 1 16 HELIX 15 AB6 VAL A 279 GLN A 284 5 6 HELIX 16 AB7 ASP A 291 ALA A 306 1 16 HELIX 17 AB8 ALA A 306 ARG A 327 1 22 HELIX 18 AB9 PHE A 333 ALA A 338 1 6 HELIX 19 AC1 ASN A 343 ALA A 367 1 25 HELIX 20 AC2 SER A 368 THR A 370 5 3 HELIX 21 AC3 LEU A 371 HIS A 376 1 6 HELIX 22 AC4 ALA A 379 VAL A 389 1 11 HELIX 23 AC5 SER A 391 GLY A 410 1 20 HELIX 24 AC6 SER A 414 LEU A 445 1 32 HELIX 25 AC7 TYR A 452 VAL A 456 5 5 HELIX 26 AC8 TYR A 460 HIS A 462 5 3 HELIX 27 AC9 ALA A 463 LEU A 493 1 31 HELIX 28 AD1 LYS A 498 ALA A 504 1 7 HELIX 29 AD2 GLU A 516 ASP A 525 1 10 HELIX 30 AD3 ARG A 526 HIS A 552 1 27 HELIX 31 AD4 ASP B 3 LEU B 37 1 35 HELIX 32 AD5 ALA B 38 ILE B 45 5 8 HELIX 33 AD6 ASP B 66 GLN B 69 5 4 HELIX 34 AD7 GLY B 156 ASN B 159 5 4 HELIX 35 AD8 PRO C 5 ARG C 33 1 29 SHEET 1 AA1 2 GLY A 218 VAL A 219 0 SHEET 2 AA1 2 VAL A 556 PRO A 557 -1 O VAL A 556 N VAL A 219 SHEET 1 AA2 3 VAL B 71 GLY B 75 0 SHEET 2 AA2 3 GLN B 78 PHE B 86 -1 O THR B 80 N VAL B 72 SHEET 3 AA2 3 GLY B 89 GLN B 91 -1 O GLY B 89 N PHE B 86 SHEET 1 AA3 4 VAL B 71 GLY B 75 0 SHEET 2 AA3 4 GLN B 78 PHE B 86 -1 O THR B 80 N VAL B 72 SHEET 3 AA3 4 GLU B 102 THR B 108 1 O VAL B 104 N TYR B 79 SHEET 4 AA3 4 SER B 133 THR B 138 -1 O SER B 133 N ILE B 107 SHEET 1 AA4 5 ILE B 95 PRO B 98 0 SHEET 2 AA4 5 PHE B 161 LYS B 167 1 O VAL B 165 N ILE B 95 SHEET 3 AA4 5 GLY B 143 ILE B 148 -1 N TYR B 145 O ILE B 164 SHEET 4 AA4 5 HIS B 114 VAL B 118 -1 N HIS B 117 O ILE B 148 SHEET 5 AA4 5 ASN B 124 VAL B 127 -1 O VAL B 127 N HIS B 114 LINK NE2 HIS A 72 FE HEM A 602 1555 1555 2.11 LINK ND1 HIS A 233 CU CU A 601 1555 1555 2.06 LINK NE2 HIS A 282 CU CU A 601 1555 1555 2.06 LINK NE2 HIS A 283 CU CU A 601 1555 1555 2.11 LINK NE2 HIS A 384 FE HAS A 603 1555 1555 2.22 LINK NE2 HIS A 386 FE HEM A 602 1555 1555 2.06 LINK CU CU A 601 O CMO A 614 1555 1555 2.34 LINK ND1 HIS B 114 CU2 CUA B 202 1555 1555 2.10 LINK SG CYS B 149 CU1 CUA B 202 1555 1555 2.31 LINK SG CYS B 149 CU2 CUA B 202 1555 1555 2.33 LINK O GLN B 151 CU1 CUA B 202 1555 1555 2.27 LINK SG CYS B 153 CU1 CUA B 202 1555 1555 2.30 LINK SG CYS B 153 CU2 CUA B 202 1555 1555 2.36 LINK ND1 HIS B 157 CU1 CUA B 202 1555 1555 2.02 LINK SD MET B 160 CU2 CUA B 202 1555 1555 2.45 CISPEP 1 PRO A 137 PRO A 138 0 7.93 CISPEP 2 ALA B 87 PHE B 88 0 -2.34 CISPEP 3 GLN B 91 PRO B 92 0 -1.23 CISPEP 4 ASN B 93 PRO B 94 0 -0.33 CRYST1 145.850 100.320 96.620 90.00 126.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006856 0.000000 0.005122 0.00000 SCALE2 0.000000 0.009968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012919 0.00000