HEADER OXIDOREDUCTASE 26-JUL-23 8K71
TITLE FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR IN COMPLEX WITH ZN(II) AND
TITLE 2 2-(3-HYDROXY-2-((2-((NAPHTHALEN-2-YLMETHYL)SULFONYL)ACETYL)IMINO)-2,
TITLE 3 3-DIHYDROTHIAZOL-4-YL)ACETIC ACID
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR, FIH, 2OG DEPENDENT
KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,T.P.CORNER,R.Z.R.TEO,L.BREWITZ,C.J.SCHOFIELD
REVDAT 1 13-DEC-23 8K71 0
JRNL AUTH T.P.CORNER,R.Z.R.TEO,Y.WU,E.SALAH,Y.NAKASHIMA,G.FIORINI,
JRNL AUTH 2 A.TUMBER,A.BRASNETT,J.P.HOLT-MARTYN,W.D.FIGG JR.,X.ZHANG,
JRNL AUTH 3 L.BREWITZ,C.J.SCHOFIELD
JRNL TITL STRUCTURE-GUIDED OPTIMISATION OF N -HYDROXYTHIAZOLE-DERIVED
JRNL TITL 2 INHIBITORS OF FACTOR INHIBITING HYPOXIA-INDUCIBLE
JRNL TITL 3 FACTOR-ALPHA.
JRNL REF CHEM SCI V. 14 12098 2023
JRNL REFN ISSN 2041-6520
JRNL PMID 37969593
JRNL DOI 10.1039/D3SC04253G
REMARK 2
REMARK 2 RESOLUTION. 2.23 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.23
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 27786
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.236
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970
REMARK 3 FREE R VALUE TEST SET COUNT : 1381
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 61.2300 - 4.8100 1.00 2851 150 0.1665 0.1965
REMARK 3 2 4.8100 - 3.8200 1.00 2689 149 0.1540 0.2011
REMARK 3 3 3.8200 - 3.3300 1.00 2657 120 0.1993 0.2066
REMARK 3 4 3.3300 - 3.0300 1.00 2641 147 0.2322 0.2874
REMARK 3 5 3.0300 - 2.8100 1.00 2600 150 0.2601 0.3169
REMARK 3 6 2.8100 - 2.6500 1.00 2632 125 0.2732 0.3149
REMARK 3 7 2.6500 - 2.5100 1.00 2597 132 0.2814 0.3273
REMARK 3 8 2.5100 - 2.4000 1.00 2572 139 0.3041 0.3228
REMARK 3 9 2.4000 - 2.3100 1.00 2592 133 0.3341 0.3853
REMARK 3 10 2.3100 - 2.2300 0.99 2574 136 0.3599 0.3504
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.369
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.165
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 61.20
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.04
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 2953
REMARK 3 ANGLE : 0.550 4014
REMARK 3 CHIRALITY : 0.042 391
REMARK 3 PLANARITY : 0.004 522
REMARK 3 DIHEDRAL : 16.787 1075
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 31 )
REMARK 3 ORIGIN FOR THE GROUP (A): 4.5990 -26.2956 23.6726
REMARK 3 T TENSOR
REMARK 3 T11: 1.2044 T22: 1.0949
REMARK 3 T33: 1.2408 T12: -0.0437
REMARK 3 T13: 0.3638 T23: -0.1843
REMARK 3 L TENSOR
REMARK 3 L11: 0.2108 L22: 9.8145
REMARK 3 L33: 5.1857 L12: -1.3160
REMARK 3 L13: -0.9174 L23: 7.1115
REMARK 3 S TENSOR
REMARK 3 S11: -0.1632 S12: -0.8826 S13: 0.2640
REMARK 3 S21: 1.0248 S22: -0.0255 S23: 0.4583
REMARK 3 S31: 0.1877 S32: 0.4170 S33: 0.1608
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 77 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.4254 -25.0548 22.1094
REMARK 3 T TENSOR
REMARK 3 T11: 0.8755 T22: 0.4503
REMARK 3 T33: 0.5385 T12: 0.0605
REMARK 3 T13: 0.2922 T23: 0.0374
REMARK 3 L TENSOR
REMARK 3 L11: 3.1526 L22: 4.7608
REMARK 3 L33: 3.1301 L12: -0.6488
REMARK 3 L13: -0.0031 L23: 2.3790
REMARK 3 S TENSOR
REMARK 3 S11: -0.0534 S12: -0.3408 S13: -0.1170
REMARK 3 S21: 0.9352 S22: 0.0651 S23: 0.2710
REMARK 3 S31: 0.2153 S32: -0.0706 S33: 0.0030
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 105 )
REMARK 3 ORIGIN FOR THE GROUP (A): 14.8885 -18.0506 -0.3195
REMARK 3 T TENSOR
REMARK 3 T11: 0.9759 T22: 0.7098
REMARK 3 T33: 0.7559 T12: 0.1569
REMARK 3 T13: -0.0185 T23: 0.1957
REMARK 3 L TENSOR
REMARK 3 L11: 2.4859 L22: 2.9007
REMARK 3 L33: 3.9923 L12: 2.3732
REMARK 3 L13: -0.0213 L23: 1.5871
REMARK 3 S TENSOR
REMARK 3 S11: -0.1550 S12: 0.4909 S13: 0.3000
REMARK 3 S21: -1.2486 S22: -0.1504 S23: 0.1617
REMARK 3 S31: -0.7002 S32: -0.1375 S33: 0.3171
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 124 )
REMARK 3 ORIGIN FOR THE GROUP (A): 21.2495 -27.8159 -9.9270
REMARK 3 T TENSOR
REMARK 3 T11: 1.3143 T22: 1.0235
REMARK 3 T33: 0.7541 T12: 0.0903
REMARK 3 T13: 0.0347 T23: 0.0082
REMARK 3 L TENSOR
REMARK 3 L11: 5.0801 L22: 5.9811
REMARK 3 L33: 0.5078 L12: -4.2703
REMARK 3 L13: 1.2641 L23: -1.7071
REMARK 3 S TENSOR
REMARK 3 S11: 0.6259 S12: 1.0759 S13: -0.4557
REMARK 3 S21: -1.4712 S22: -0.6607 S23: 0.2633
REMARK 3 S31: -0.5895 S32: -0.2725 S33: 0.0913
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 247 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.0893 -23.2442 7.4907
REMARK 3 T TENSOR
REMARK 3 T11: 0.6456 T22: 0.4507
REMARK 3 T33: 0.5764 T12: 0.0429
REMARK 3 T13: 0.1320 T23: 0.0403
REMARK 3 L TENSOR
REMARK 3 L11: 0.8362 L22: 4.7444
REMARK 3 L33: 3.4977 L12: -0.7845
REMARK 3 L13: -0.6065 L23: 2.0132
REMARK 3 S TENSOR
REMARK 3 S11: -0.0112 S12: 0.1521 S13: 0.1023
REMARK 3 S21: -0.3174 S22: 0.0583 S23: 0.3848
REMARK 3 S31: -0.3968 S32: -0.0862 S33: -0.0393
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.2600 -36.3842 7.6412
REMARK 3 T TENSOR
REMARK 3 T11: 0.6075 T22: 0.4575
REMARK 3 T33: 0.4325 T12: 0.0061
REMARK 3 T13: 0.0756 T23: 0.0360
REMARK 3 L TENSOR
REMARK 3 L11: 2.2625 L22: 5.1386
REMARK 3 L33: 2.2134 L12: -1.6042
REMARK 3 L13: -0.9162 L23: 1.8714
REMARK 3 S TENSOR
REMARK 3 S11: 0.0333 S12: 0.0825 S13: 0.2874
REMARK 3 S21: 0.1261 S22: 0.1432 S23: -0.0477
REMARK 3 S31: -0.1730 S32: 0.1152 S33: -0.2070
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8K71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1300033489.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-NOV-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27886
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230
REMARK 200 RESOLUTION RANGE LOW (A) : 86.590
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.30
REMARK 200 R MERGE (I) : 0.12700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5
REMARK 200 DATA REDUNDANCY IN SHELL : 26.70
REMARK 200 R MERGE FOR SHELL (I) : 4.05000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4B7K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.87
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.27 MM FIH, 0.5 MM ZINC ACETATE, 2 MM
REMARK 280 BNS, 0.1 M HEPES, PH 7.5, 6%W/V PEG400, 1.6 M AMMONIUM SULFATE,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.24950
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.29350
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.29350
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.62475
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.29350
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.29350
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.87425
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.29350
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.29350
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.62475
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.29350
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.29350
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.87425
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.24950
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8370 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31320 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 86.58700
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -86.58700
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 29 CG CD OE1 OE2
REMARK 470 LYS A 106 NZ
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 311 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O26 VIZ A 502 O HOH A 601 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 41.57 -140.53
REMARK 500 PHE A 100 78.92 -103.35
REMARK 500 ASN A 113 32.16 -84.25
REMARK 500 ASN A 151 -148.16 -153.24
REMARK 500 ILE A 210 -58.80 -121.60
REMARK 500 TYR A 228 71.12 50.96
REMARK 500 ARG A 238 -1.22 81.78
REMARK 500 ASN A 246 73.55 -152.82
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 501 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 119.9
REMARK 620 3 HIS A 279 NE2 89.5 84.4
REMARK 620 4 VIZ A 502 O01 109.6 128.0 81.1
REMARK 620 N 1 2 3
DBREF 8K71 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET ZN A 501 1
HET VIZ A 502 28
HET SO4 A 503 5
HET SO4 A 504 5
HET SO4 A 505 5
HET SO4 A 506 5
HET SO4 A 507 5
HET SO4 A 508 5
HET SO4 A 509 5
HET SO4 A 510 5
HET GOL A 511 6
HET GOL A 512 6
HET GOL A 513 6
HET GOL A 514 6
HET GOL A 515 6
HET GOL A 516 6
HET GOL A 517 6
HETNAM ZN ZINC ION
HETNAM VIZ 2-[(2~{Z})-2-[2-(NAPHTHALEN-2-YLMETHYLSULFONYL)
HETNAM 2 VIZ ETHANOYLIMINO]-3-OXIDANYL-1,3-THIAZOL-4-YL]ETHANOIC
HETNAM 3 VIZ ACID
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 ZN ZN 2+
FORMUL 3 VIZ C18 H16 N2 O6 S2
FORMUL 4 SO4 8(O4 S 2-)
FORMUL 12 GOL 7(C3 H8 O3)
FORMUL 19 HOH *77(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 GLU A 105 ASN A 110 5 6
HELIX 7 AA7 PHE A 125 GLY A 139 1 15
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210
SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187
SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N SER A 91 O GLN A 147
SHEET 9 AA2 9 ARG A 120 LYS A 124 -1 O GLU A 121 N VAL A 92
LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.20
LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.13
LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.31
LINK ZN ZN A 501 O01 VIZ A 502 1555 1555 2.10
CISPEP 1 TYR A 308 PRO A 309 0 2.28
CRYST1 86.587 86.587 146.499 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011549 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011549 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006826 0.00000