HEADER OXIDOREDUCTASE 26-JUL-23 8K73
TITLE FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR IN COMPLEX WITH ZN(II) AND
TITLE 2 2-(3-HYDROXY-2-((1-(PHENYLSULFONYL)PYRROLIDINE-3-CARBONYL)IMINO)-2,3-
TITLE 3 DIHYDROTHIAZOL-4-YL)ACETIC ACID
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR, FIH, 2OG DEPENDENT
KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,T.P.CORNER,R.Z.R.TEO,L.BREWITZ,C.J.SCHOFIELD
REVDAT 1 13-DEC-23 8K73 0
JRNL AUTH T.P.CORNER,R.Z.R.TEO,Y.WU,E.SALAH,Y.NAKASHIMA,G.FIORINI,
JRNL AUTH 2 A.TUMBER,A.BRASNETT,J.P.HOLT-MARTYN,W.D.FIGG JR.,X.ZHANG,
JRNL AUTH 3 L.BREWITZ,C.J.SCHOFIELD
JRNL TITL STRUCTURE-GUIDED OPTIMISATION OF N -HYDROXYTHIAZOLE-DERIVED
JRNL TITL 2 INHIBITORS OF FACTOR INHIBITING HYPOXIA-INDUCIBLE
JRNL TITL 3 FACTOR-ALPHA.
JRNL REF CHEM SCI V. 14 12098 2023
JRNL REFN ISSN 2041-6520
JRNL PMID 37969593
JRNL DOI 10.1039/D3SC04253G
REMARK 2
REMARK 2 RESOLUTION. 2.02 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.24
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6
REMARK 3 NUMBER OF REFLECTIONS : 66833
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.201
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050
REMARK 3 FREE R VALUE TEST SET COUNT : 3375
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 61.2400 - 5.8300 1.00 2722 156 0.1655 0.1927
REMARK 3 2 5.8200 - 4.6200 1.00 2766 142 0.1507 0.1629
REMARK 3 3 4.6200 - 4.0400 1.00 2713 146 0.1445 0.1800
REMARK 3 4 4.0400 - 3.6700 1.00 2742 145 0.1804 0.2249
REMARK 3 5 3.6700 - 3.4100 1.00 2744 147 0.1901 0.1955
REMARK 3 6 3.4100 - 3.2100 1.00 2769 122 0.2244 0.2419
REMARK 3 7 3.2100 - 3.0500 1.00 2753 146 0.2352 0.2714
REMARK 3 8 3.0500 - 2.9100 1.00 2716 129 0.2290 0.2256
REMARK 3 9 2.9100 - 2.8000 1.00 2751 160 0.2254 0.2274
REMARK 3 10 2.8000 - 2.7000 1.00 2702 179 0.2572 0.2582
REMARK 3 11 2.7000 - 2.6200 1.00 2741 142 0.2691 0.3001
REMARK 3 12 2.6200 - 2.5400 1.00 2726 149 0.2620 0.3147
REMARK 3 13 2.5400 - 2.4800 1.00 2757 141 0.2404 0.2626
REMARK 3 14 2.4800 - 2.4200 1.00 2705 153 0.2428 0.2872
REMARK 3 15 2.4200 - 2.3600 1.00 2741 161 0.2630 0.2557
REMARK 3 16 2.3600 - 2.3100 1.00 2724 144 0.2838 0.3117
REMARK 3 17 2.3100 - 2.2700 1.00 2772 109 0.3035 0.3620
REMARK 3 18 2.2700 - 2.2200 1.00 2710 163 0.3577 0.3069
REMARK 3 19 2.2200 - 2.1800 1.00 2777 142 0.3513 0.3620
REMARK 3 20 2.1800 - 2.1500 1.00 2703 173 0.3731 0.4074
REMARK 3 21 2.1500 - 2.1100 0.99 2648 160 0.3873 0.3941
REMARK 3 22 2.1100 - 2.0800 0.98 2763 125 0.4041 0.4029
REMARK 3 23 2.0800 - 2.0500 0.68 1889 75 0.4211 0.3792
REMARK 3 24 2.0500 - 2.0200 0.52 1424 66 0.4316 0.4625
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.310
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 58.62
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.54
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2990
REMARK 3 ANGLE : 0.589 4069
REMARK 3 CHIRALITY : 0.045 396
REMARK 3 PLANARITY : 0.004 533
REMARK 3 DIHEDRAL : 16.771 1097
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.5983 -29.5024 21.9742
REMARK 3 T TENSOR
REMARK 3 T11: 0.8380 T22: 0.5838
REMARK 3 T33: 0.8113 T12: 0.0273
REMARK 3 T13: 0.2701 T23: -0.0651
REMARK 3 L TENSOR
REMARK 3 L11: 0.4340 L22: 0.6440
REMARK 3 L33: 0.7653 L12: -0.5544
REMARK 3 L13: -0.5808 L23: 0.7483
REMARK 3 S TENSOR
REMARK 3 S11: -0.1002 S12: -0.2905 S13: 0.0100
REMARK 3 S21: 0.7598 S22: -0.3289 S23: 0.9621
REMARK 3 S31: 0.2924 S32: -0.6176 S33: 0.3706
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 77 )
REMARK 3 ORIGIN FOR THE GROUP (A): 23.0151 -19.7517 22.4147
REMARK 3 T TENSOR
REMARK 3 T11: 0.8675 T22: 0.5014
REMARK 3 T33: 0.5631 T12: 0.0507
REMARK 3 T13: 0.1471 T23: -0.0331
REMARK 3 L TENSOR
REMARK 3 L11: 1.9688 L22: 3.2846
REMARK 3 L33: 2.4943 L12: -0.2977
REMARK 3 L13: 0.1695 L23: -0.0350
REMARK 3 S TENSOR
REMARK 3 S11: 0.0395 S12: -0.3925 S13: 0.2671
REMARK 3 S21: 0.4912 S22: 0.1588 S23: -0.0791
REMARK 3 S31: -0.1078 S32: -0.0219 S33: -0.1374
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 119 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.5325 -22.2870 -3.8510
REMARK 3 T TENSOR
REMARK 3 T11: 1.0568 T22: 0.7812
REMARK 3 T33: 0.6481 T12: 0.0947
REMARK 3 T13: -0.0527 T23: 0.1523
REMARK 3 L TENSOR
REMARK 3 L11: 2.7586 L22: 1.3492
REMARK 3 L33: 0.6625 L12: -0.4829
REMARK 3 L13: -0.0500 L23: -0.0678
REMARK 3 S TENSOR
REMARK 3 S11: 0.0206 S12: 0.7958 S13: 0.1059
REMARK 3 S21: -0.8248 S22: -0.2450 S23: 0.1405
REMARK 3 S31: -0.5106 S32: -0.3002 S33: 0.2193
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 283 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.3197 -25.4734 7.8708
REMARK 3 T TENSOR
REMARK 3 T11: 0.6550 T22: 0.4277
REMARK 3 T33: 0.5258 T12: 0.0367
REMARK 3 T13: 0.0921 T23: 0.0423
REMARK 3 L TENSOR
REMARK 3 L11: 1.2738 L22: 2.9640
REMARK 3 L33: 2.7717 L12: -0.3185
REMARK 3 L13: -0.5293 L23: 1.6616
REMARK 3 S TENSOR
REMARK 3 S11: -0.0006 S12: 0.1709 S13: 0.1145
REMARK 3 S21: -0.1404 S22: 0.0416 S23: 0.2632
REMARK 3 S31: -0.3146 S32: -0.0929 S33: -0.0588
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 311 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.5501 -26.1327 13.0182
REMARK 3 T TENSOR
REMARK 3 T11: 0.6577 T22: 0.5473
REMARK 3 T33: 0.6968 T12: 0.0287
REMARK 3 T13: 0.0610 T23: -0.0287
REMARK 3 L TENSOR
REMARK 3 L11: 1.2088 L22: 2.7192
REMARK 3 L33: 2.1803 L12: 0.2123
REMARK 3 L13: -0.5849 L23: 0.7713
REMARK 3 S TENSOR
REMARK 3 S11: 0.1570 S12: 0.1215 S13: -0.1068
REMARK 3 S21: 0.1190 S22: 0.1485 S23: -0.2159
REMARK 3 S31: -0.2336 S32: 0.3275 S33: -0.2898
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 38.7475 -43.7465 -1.6353
REMARK 3 T TENSOR
REMARK 3 T11: 0.5860 T22: 0.5999
REMARK 3 T33: 0.5282 T12: -0.0196
REMARK 3 T13: 0.0354 T23: -0.0345
REMARK 3 L TENSOR
REMARK 3 L11: 1.9315 L22: 2.7198
REMARK 3 L33: 2.2823 L12: -0.8662
REMARK 3 L13: -0.4421 L23: 0.2131
REMARK 3 S TENSOR
REMARK 3 S11: -0.0219 S12: 0.1598 S13: 0.4702
REMARK 3 S21: -0.2171 S22: -0.0263 S23: -0.2068
REMARK 3 S31: -0.3330 S32: 0.2243 S33: 0.0280
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8K73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1300033515.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-APR-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66833
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020
REMARK 200 RESOLUTION RANGE LOW (A) : 74.390
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.50
REMARK 200 R MERGE (I) : 0.07900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 26.60
REMARK 200 R MERGE FOR SHELL (I) : 4.74000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4B7K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.58
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.27 MM FIH, 0.5 MM ZINC ACETATE, 2 MM
REMARK 280 RT105, 0.1 M HEPES, PH 7.5, 6%W/V PEG400, 1.6 M AMMONIUM SULFATE,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.62950
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.30450
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.30450
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.31475
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.30450
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.30450
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.94425
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.30450
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.30450
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.31475
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.30450
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.30450
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.94425
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.62950
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31290 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 86.60900
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -86.60900
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 29 CD OE1 OE2
REMARK 470 LEU A 101 CG CD1 CD2
REMARK 470 LYS A 106 CD CE NZ
REMARK 470 ASN A 113 CG OD1 ND2
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 133 CD OE1 NE2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 40.44 -141.88
REMARK 500 ASN A 113 46.27 -90.44
REMARK 500 ASN A 151 -164.72 -127.22
REMARK 500 ILE A 210 -56.30 -121.30
REMARK 500 ARG A 238 -1.36 77.73
REMARK 500 ASN A 246 71.85 -153.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 410 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 128.1
REMARK 620 3 HIS A 279 NE2 90.5 80.9
REMARK 620 4 VK6 A 411 O06 96.7 132.1 83.0
REMARK 620 N 1 2 3
DBREF 8K73 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET SO4 A 401 5
HET SO4 A 402 5
HET GOL A 403 6
HET GOL A 404 6
HET GOL A 405 6
HET GOL A 406 6
HET GOL A 407 6
HET GOL A 408 6
HET GOL A 409 6
HET ZN A 410 1
HET VK6 A 411 27
HET SO4 A 412 5
HET SO4 A 413 5
HET SO4 A 414 5
HET SO4 A 415 5
HET SO4 A 416 5
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM ZN ZINC ION
HETNAM VK6 2-[(2~{Z})-3-OXIDANYL-2-[(3~{R})-1-(PHENYLSULFONYL)
HETNAM 2 VK6 PYRROLIDIN-3-YL]CARBONYLIMINO-1,3-THIAZOL-4-
HETNAM 3 VK6 YL]ETHANOIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 SO4 7(O4 S 2-)
FORMUL 4 GOL 7(C3 H8 O3)
FORMUL 11 ZN ZN 2+
FORMUL 12 VK6 C16 H17 N3 O6 S2
FORMUL 18 HOH *81(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 ASP A 104 PHE A 111 5 8
HELIX 7 AA7 LYS A 124 GLY A 139 1 16
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 203 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 LYS A 298 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ARG A 120 MET A 123 -1 O MET A 123 N PHE A 90
LINK NE2 HIS A 199 ZN ZN A 410 1555 1555 2.16
LINK OD2 ASP A 201 ZN ZN A 410 1555 1555 2.03
LINK NE2 HIS A 279 ZN ZN A 410 1555 1555 2.31
LINK ZN ZN A 410 O06 VK6 A 411 1555 1555 1.84
CISPEP 1 TYR A 308 PRO A 309 0 0.43
CRYST1 86.609 86.609 145.259 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011546 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011546 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006884 0.00000