HEADER LIGASE 01-AUG-23 8K9X TITLE CRYSTAL STRUCTURE OF PLASMODIUM LYSRS COMPLEXING WITH ASP3026 DERIVED TITLE 2 LYSRS INHIBITOR 5 (ADKI5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSYL-TRNA SYNTHETASE; COMPND 5 EC: 6.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM CAMP/MALAYSIA; SOURCE 3 ORGANISM_TAXID: 5835; SOURCE 4 GENE: PFMC_04735; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYSYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,M.XIA,G.YANG,P.LI,P.FANG REVDAT 2 03-JUL-24 8K9X 1 JRNL REVDAT 1 26-JUN-24 8K9X 0 JRNL AUTH J.ZHOU,M.XIA,Z.HUANG,H.QIAO,G.YANG,Y.QIAN,P.LI,Z.ZHANG, JRNL AUTH 2 X.GAO,L.JIANG,J.WANG,W.LI,P.FANG JRNL TITL STRUCTURE-GUIDED CONVERSION FROM AN ANAPLASTIC LYMPHOMA JRNL TITL 2 KINASE INHIBITOR INTO PLASMODIUM LYSYL-TRNA SYNTHETASE JRNL TITL 3 SELECTIVE INHIBITORS. JRNL REF COMMUN BIOL V. 7 742 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38890421 JRNL DOI 10.1038/S42003-024-06455-4 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 51437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1200 - 5.6600 1.00 3791 154 0.1904 0.2119 REMARK 3 2 5.6600 - 4.4900 1.00 3627 146 0.1739 0.2152 REMARK 3 3 4.4900 - 3.9300 0.99 3583 144 0.1800 0.2241 REMARK 3 4 3.9300 - 3.5700 0.95 3392 139 0.2563 0.3069 REMARK 3 5 3.5700 - 3.3100 0.98 3473 140 0.2456 0.3216 REMARK 3 6 3.3100 - 3.1200 1.00 3531 142 0.2402 0.3145 REMARK 3 7 3.1200 - 2.9600 1.00 3547 144 0.2568 0.3231 REMARK 3 8 2.9600 - 2.8300 1.00 3541 143 0.2603 0.2936 REMARK 3 9 2.8300 - 2.7200 1.00 3507 142 0.2622 0.3253 REMARK 3 10 2.7200 - 2.6300 0.98 3444 139 0.3064 0.3300 REMARK 3 11 2.6300 - 2.5500 1.00 3472 141 0.2756 0.3365 REMARK 3 12 2.5500 - 2.4700 0.99 3516 141 0.3030 0.3804 REMARK 3 13 2.4700 - 2.4100 1.00 3509 142 0.3283 0.3685 REMARK 3 14 2.4100 - 2.3500 1.00 3506 141 0.4498 0.4432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 NULL REMARK 3 ANGLE : 1.076 NULL REMARK 3 CHIRALITY : 0.061 1173 REMARK 3 PLANARITY : 0.010 1390 REMARK 3 DIHEDRAL : 17.767 2918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.3696 -5.4684 -46.0254 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.2544 REMARK 3 T33: 0.3092 T12: -0.0165 REMARK 3 T13: -0.0140 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4012 L22: 0.1881 REMARK 3 L33: 0.7383 L12: 0.0697 REMARK 3 L13: -0.0500 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0506 S13: 0.0385 REMARK 3 S21: -0.0055 S22: -0.0164 S23: -0.0187 REMARK 3 S31: 0.0176 S32: -0.1373 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8K9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300039963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 1.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES PH 6.0, PEG4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.83550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.83550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 76 REMARK 465 GLU A 77 REMARK 465 VAL A 78 REMARK 465 SER A 145 REMARK 465 GLY A 146 REMARK 465 GLY A 283 REMARK 465 GLY A 284 REMARK 465 ALA A 285 REMARK 465 LYS A 519 REMARK 465 LEU A 520 REMARK 465 GLN A 521 REMARK 465 GLN A 522 REMARK 465 LYS A 523 REMARK 465 ASP A 524 REMARK 465 ARG A 525 REMARK 465 GLU A 526 REMARK 465 LYS A 527 REMARK 465 GLY A 528 REMARK 465 ASP A 529 REMARK 465 THR A 530 REMARK 465 GLU A 531 REMARK 465 ALA A 532 REMARK 465 ALA A 533 REMARK 465 GLN A 534 REMARK 465 LEU A 535 REMARK 465 ALA A 582 REMARK 465 ASN A 583 REMARK 465 GLY A 584 REMARK 465 GLY A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 MET B 76 REMARK 465 GLU B 77 REMARK 465 SER B 145 REMARK 465 GLY B 146 REMARK 465 GLY B 283 REMARK 465 GLY B 284 REMARK 465 ALA B 285 REMARK 465 ASN B 286 REMARK 465 LYS B 519 REMARK 465 LEU B 520 REMARK 465 GLN B 521 REMARK 465 GLN B 522 REMARK 465 LYS B 523 REMARK 465 ASP B 524 REMARK 465 ARG B 525 REMARK 465 GLU B 526 REMARK 465 LYS B 527 REMARK 465 GLY B 528 REMARK 465 ASP B 529 REMARK 465 THR B 530 REMARK 465 GLU B 531 REMARK 465 ALA B 532 REMARK 465 ALA B 533 REMARK 465 GLN B 534 REMARK 465 LEU B 535 REMARK 465 ALA B 582 REMARK 465 ASN B 583 REMARK 465 GLY B 584 REMARK 465 GLY B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 ARG A 81 CD NE CZ NH1 NH2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 LYS A 97 CD CE NZ REMARK 470 LYS A 118 CD CE NZ REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 MET A 223 CG SD CE REMARK 470 TYR A 225 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 THR A 230 OG1 CG2 REMARK 470 ILE A 281 CG1 CG2 CD1 REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 LYS A 382 CE NZ REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 GLN A 417 CG CD OE1 NE2 REMARK 470 ASP A 420 CG OD1 OD2 REMARK 470 ASN A 422 CG OD1 ND2 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 433 CD CE NZ REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 GLU A 438 CG CD OE1 OE2 REMARK 470 ASN A 441 CG OD1 ND2 REMARK 470 LYS A 447 CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 LYS A 515 CG CD CE NZ REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 PHE A 518 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 536 CG OD1 OD2 REMARK 470 LYS A 571 CE NZ REMARK 470 VAL B 78 CG1 CG2 REMARK 470 ASP B 79 CG OD1 OD2 REMARK 470 ARG B 81 CD NE CZ NH1 NH2 REMARK 470 LYS B 89 CD CE NZ REMARK 470 LYS B 97 CD CE NZ REMARK 470 LYS B 118 CD CE NZ REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 GLN B 147 CG CD OE1 NE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 ASP B 229 CG OD1 OD2 REMARK 470 THR B 230 OG1 CG2 REMARK 470 ILE B 281 CG1 CG2 CD1 REMARK 470 LEU B 299 CG CD1 CD2 REMARK 470 LYS B 382 CE NZ REMARK 470 ASP B 383 CG OD1 OD2 REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 GLU B 416 CG CD OE1 OE2 REMARK 470 GLN B 417 CG CD OE1 NE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 GLU B 426 CG CD OE1 OE2 REMARK 470 LYS B 433 CE NZ REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 GLU B 438 CG CD OE1 OE2 REMARK 470 LYS B 447 CD CE NZ REMARK 470 LYS B 460 CG CD CE NZ REMARK 470 LYS B 513 CG CD CE NZ REMARK 470 LYS B 515 CG CD CE NZ REMARK 470 GLU B 516 CG CD OE1 OE2 REMARK 470 PHE B 518 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 536 CG OD1 OD2 REMARK 470 LYS B 571 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 308 N7 JUA B 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 168 O ILE B 437 3444 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 227 73.57 -119.13 REMARK 500 LYS A 228 -45.12 -134.12 REMARK 500 GLN A 417 -169.55 65.85 REMARK 500 GLU A 490 44.46 -95.35 REMARK 500 CYS A 517 58.89 -90.04 REMARK 500 SER B 215 113.93 -168.01 REMARK 500 LYS B 228 -62.17 -108.77 REMARK 500 ASP B 353 -168.33 -127.75 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8K9X A 77 583 UNP A0A024X378_PLAFC DBREF2 8K9X A A0A024X378 77 583 DBREF1 8K9X B 77 583 UNP A0A024X378_PLAFC DBREF2 8K9X B A0A024X378 77 583 SEQADV 8K9X MET A 76 UNP A0A024X37 INITIATING METHIONINE SEQADV 8K9X GLY A 584 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X GLY A 585 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 586 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 587 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 588 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 589 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 590 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS A 591 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X MET B 76 UNP A0A024X37 INITIATING METHIONINE SEQADV 8K9X GLY B 584 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X GLY B 585 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 586 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 587 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 588 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 589 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 590 UNP A0A024X37 EXPRESSION TAG SEQADV 8K9X HIS B 591 UNP A0A024X37 EXPRESSION TAG SEQRES 1 A 516 MET GLU VAL ASP PRO ARG LEU TYR PHE GLU ASN ARG SER SEQRES 2 A 516 LYS PHE ILE GLN ASP GLN LYS ASP LYS GLY ILE ASN PRO SEQRES 3 A 516 TYR PRO HIS LYS PHE GLU ARG THR ILE SER ILE PRO GLU SEQRES 4 A 516 PHE ILE GLU LYS TYR LYS ASP LEU GLY ASN GLY GLU HIS SEQRES 5 A 516 LEU GLU ASP THR ILE LEU ASN ILE THR GLY ARG ILE MET SEQRES 6 A 516 ARG VAL SER ALA SER GLY GLN LYS LEU ARG PHE PHE ASP SEQRES 7 A 516 LEU VAL GLY ASP GLY GLU LYS ILE GLN VAL LEU ALA ASN SEQRES 8 A 516 TYR SER PHE HIS ASN HIS GLU LYS GLY ASN PHE ALA GLU SEQRES 9 A 516 CYS TYR ASP LYS ILE ARG ARG GLY ASP ILE VAL GLY ILE SEQRES 10 A 516 VAL GLY PHE PRO GLY LYS SER LYS LYS GLY GLU LEU SER SEQRES 11 A 516 ILE PHE PRO LYS GLU THR ILE LEU LEU SER ALA CYS LEU SEQRES 12 A 516 HIS MET LEU PRO MET LYS TYR GLY LEU LYS ASP THR GLU SEQRES 13 A 516 ILE ARG TYR ARG GLN ARG TYR LEU ASP LEU LEU ILE ASN SEQRES 14 A 516 GLU SER SER ARG HIS THR PHE VAL THR ARG THR LYS ILE SEQRES 15 A 516 ILE ASN PHE LEU ARG ASN PHE LEU ASN GLU ARG GLY PHE SEQRES 16 A 516 PHE GLU VAL GLU THR PRO MET MET ASN LEU ILE ALA GLY SEQRES 17 A 516 GLY ALA ASN ALA ARG PRO PHE ILE THR HIS HIS ASN ASP SEQRES 18 A 516 LEU ASP LEU ASP LEU TYR LEU ARG ILE ALA THR GLU LEU SEQRES 19 A 516 PRO LEU LYS MET LEU ILE VAL GLY GLY ILE ASP LYS VAL SEQRES 20 A 516 TYR GLU ILE GLY LYS VAL PHE ARG ASN GLU GLY ILE ASP SEQRES 21 A 516 ASN THR HIS ASN PRO GLU PHE THR SER CYS GLU PHE TYR SEQRES 22 A 516 TRP ALA TYR ALA ASP TYR ASN ASP LEU ILE LYS TRP SER SEQRES 23 A 516 GLU ASP PHE PHE SER GLN LEU VAL TYR HIS LEU PHE GLY SEQRES 24 A 516 THR TYR LYS ILE SER TYR ASN LYS ASP GLY PRO GLU ASN SEQRES 25 A 516 GLN PRO ILE GLU ILE ASP PHE THR PRO PRO TYR PRO LYS SEQRES 26 A 516 VAL SER ILE VAL GLU GLU ILE GLU LYS VAL THR ASN THR SEQRES 27 A 516 ILE LEU GLU GLN PRO PHE ASP SER ASN GLU THR ILE GLU SEQRES 28 A 516 LYS MET ILE ASN ILE ILE LYS GLU HIS LYS ILE GLU LEU SEQRES 29 A 516 PRO ASN PRO PRO THR ALA ALA LYS LEU LEU ASP GLN LEU SEQRES 30 A 516 ALA SER HIS PHE ILE GLU ASN LYS TYR ASN ASP LYS PRO SEQRES 31 A 516 PHE PHE ILE VAL GLU HIS PRO GLN ILE MET SER PRO LEU SEQRES 32 A 516 ALA LYS TYR HIS ARG THR LYS PRO GLY LEU THR GLU ARG SEQRES 33 A 516 LEU GLU MET PHE ILE CYS GLY LYS GLU VAL LEU ASN ALA SEQRES 34 A 516 TYR THR GLU LEU ASN ASP PRO PHE LYS GLN LYS GLU CYS SEQRES 35 A 516 PHE LYS LEU GLN GLN LYS ASP ARG GLU LYS GLY ASP THR SEQRES 36 A 516 GLU ALA ALA GLN LEU ASP SER ALA PHE CYS THR SER LEU SEQRES 37 A 516 GLU TYR GLY LEU PRO PRO THR GLY GLY LEU GLY LEU GLY SEQRES 38 A 516 ILE ASP ARG ILE THR MET PHE LEU THR ASN LYS ASN SER SEQRES 39 A 516 ILE LYS ASP VAL ILE LEU PHE PRO THR MET ARG PRO ALA SEQRES 40 A 516 ASN GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 516 MET GLU VAL ASP PRO ARG LEU TYR PHE GLU ASN ARG SER SEQRES 2 B 516 LYS PHE ILE GLN ASP GLN LYS ASP LYS GLY ILE ASN PRO SEQRES 3 B 516 TYR PRO HIS LYS PHE GLU ARG THR ILE SER ILE PRO GLU SEQRES 4 B 516 PHE ILE GLU LYS TYR LYS ASP LEU GLY ASN GLY GLU HIS SEQRES 5 B 516 LEU GLU ASP THR ILE LEU ASN ILE THR GLY ARG ILE MET SEQRES 6 B 516 ARG VAL SER ALA SER GLY GLN LYS LEU ARG PHE PHE ASP SEQRES 7 B 516 LEU VAL GLY ASP GLY GLU LYS ILE GLN VAL LEU ALA ASN SEQRES 8 B 516 TYR SER PHE HIS ASN HIS GLU LYS GLY ASN PHE ALA GLU SEQRES 9 B 516 CYS TYR ASP LYS ILE ARG ARG GLY ASP ILE VAL GLY ILE SEQRES 10 B 516 VAL GLY PHE PRO GLY LYS SER LYS LYS GLY GLU LEU SER SEQRES 11 B 516 ILE PHE PRO LYS GLU THR ILE LEU LEU SER ALA CYS LEU SEQRES 12 B 516 HIS MET LEU PRO MET LYS TYR GLY LEU LYS ASP THR GLU SEQRES 13 B 516 ILE ARG TYR ARG GLN ARG TYR LEU ASP LEU LEU ILE ASN SEQRES 14 B 516 GLU SER SER ARG HIS THR PHE VAL THR ARG THR LYS ILE SEQRES 15 B 516 ILE ASN PHE LEU ARG ASN PHE LEU ASN GLU ARG GLY PHE SEQRES 16 B 516 PHE GLU VAL GLU THR PRO MET MET ASN LEU ILE ALA GLY SEQRES 17 B 516 GLY ALA ASN ALA ARG PRO PHE ILE THR HIS HIS ASN ASP SEQRES 18 B 516 LEU ASP LEU ASP LEU TYR LEU ARG ILE ALA THR GLU LEU SEQRES 19 B 516 PRO LEU LYS MET LEU ILE VAL GLY GLY ILE ASP LYS VAL SEQRES 20 B 516 TYR GLU ILE GLY LYS VAL PHE ARG ASN GLU GLY ILE ASP SEQRES 21 B 516 ASN THR HIS ASN PRO GLU PHE THR SER CYS GLU PHE TYR SEQRES 22 B 516 TRP ALA TYR ALA ASP TYR ASN ASP LEU ILE LYS TRP SER SEQRES 23 B 516 GLU ASP PHE PHE SER GLN LEU VAL TYR HIS LEU PHE GLY SEQRES 24 B 516 THR TYR LYS ILE SER TYR ASN LYS ASP GLY PRO GLU ASN SEQRES 25 B 516 GLN PRO ILE GLU ILE ASP PHE THR PRO PRO TYR PRO LYS SEQRES 26 B 516 VAL SER ILE VAL GLU GLU ILE GLU LYS VAL THR ASN THR SEQRES 27 B 516 ILE LEU GLU GLN PRO PHE ASP SER ASN GLU THR ILE GLU SEQRES 28 B 516 LYS MET ILE ASN ILE ILE LYS GLU HIS LYS ILE GLU LEU SEQRES 29 B 516 PRO ASN PRO PRO THR ALA ALA LYS LEU LEU ASP GLN LEU SEQRES 30 B 516 ALA SER HIS PHE ILE GLU ASN LYS TYR ASN ASP LYS PRO SEQRES 31 B 516 PHE PHE ILE VAL GLU HIS PRO GLN ILE MET SER PRO LEU SEQRES 32 B 516 ALA LYS TYR HIS ARG THR LYS PRO GLY LEU THR GLU ARG SEQRES 33 B 516 LEU GLU MET PHE ILE CYS GLY LYS GLU VAL LEU ASN ALA SEQRES 34 B 516 TYR THR GLU LEU ASN ASP PRO PHE LYS GLN LYS GLU CYS SEQRES 35 B 516 PHE LYS LEU GLN GLN LYS ASP ARG GLU LYS GLY ASP THR SEQRES 36 B 516 GLU ALA ALA GLN LEU ASP SER ALA PHE CYS THR SER LEU SEQRES 37 B 516 GLU TYR GLY LEU PRO PRO THR GLY GLY LEU GLY LEU GLY SEQRES 38 B 516 ILE ASP ARG ILE THR MET PHE LEU THR ASN LYS ASN SER SEQRES 39 B 516 ILE LYS ASP VAL ILE LEU PHE PRO THR MET ARG PRO ALA SEQRES 40 B 516 ASN GLY GLY HIS HIS HIS HIS HIS HIS HET JUA A 601 40 HET MES A 602 12 HET MES A 603 12 HET JUA B 601 40 HETNAM JUA (2~{S})-2,6-BIS(AZANYL)-~{N}-[3-[2-[[4-[(2,5- HETNAM 2 JUA DIMETHOXYPHENYL)AMINO]-1,3,5-TRIAZIN-2- HETNAM 3 JUA YL]AMINO]PHENYL]SULFONYLPROPYL]HEXANAMIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 JUA 2(C26 H36 N8 O5 S) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 7 HOH *128(H2 O) HELIX 1 AA1 ASP A 79 ASP A 96 1 18 HELIX 2 AA2 SER A 111 LYS A 120 1 10 HELIX 3 AA3 SER A 168 HIS A 170 5 3 HELIX 4 AA4 ASN A 176 LYS A 183 1 8 HELIX 5 AA5 MET A 223 LYS A 228 5 6 HELIX 6 AA6 GLU A 231 GLN A 236 1 6 HELIX 7 AA7 GLN A 236 ASN A 244 1 9 HELIX 8 AA8 ASN A 244 ARG A 268 1 25 HELIX 9 AA9 THR A 307 GLY A 317 1 11 HELIX 10 AB1 ASP A 353 GLY A 374 1 22 HELIX 11 AB2 ILE A 403 ASN A 412 1 10 HELIX 12 AB3 SER A 421 HIS A 435 1 15 HELIX 13 AB4 THR A 444 ILE A 457 1 14 HELIX 14 AB5 PRO A 472 SER A 476 5 5 HELIX 15 AB6 SER A 537 GLU A 544 1 8 HELIX 16 AB7 ILE A 557 THR A 565 1 9 HELIX 17 AB8 SER A 569 VAL A 573 5 5 HELIX 18 AB9 ASP B 79 LYS B 97 1 19 HELIX 19 AC1 SER B 111 LYS B 120 1 10 HELIX 20 AC2 SER B 168 HIS B 170 5 3 HELIX 21 AC3 ASN B 176 LYS B 183 1 8 HELIX 22 AC4 MET B 223 LYS B 228 5 6 HELIX 23 AC5 GLU B 231 GLN B 236 1 6 HELIX 24 AC6 GLN B 236 ASN B 244 1 9 HELIX 25 AC7 ASN B 244 ARG B 268 1 25 HELIX 26 AC8 THR B 307 GLY B 317 1 11 HELIX 27 AC9 ASP B 353 GLY B 374 1 22 HELIX 28 AD1 ILE B 403 ASN B 412 1 10 HELIX 29 AD2 SER B 421 LYS B 436 1 16 HELIX 30 AD3 THR B 444 ILE B 457 1 14 HELIX 31 AD4 PRO B 472 SER B 476 5 5 HELIX 32 AD5 SER B 537 GLU B 544 1 8 HELIX 33 AD6 ILE B 557 THR B 565 1 9 HELIX 34 AD7 SER B 569 VAL B 573 5 5 SHEET 1 AA1 6 LEU A 133 SER A 143 0 SHEET 2 AA1 6 LEU A 149 GLY A 156 -1 O VAL A 155 N ARG A 138 SHEET 3 AA1 6 GLU A 159 ASN A 166 -1 O VAL A 163 N PHE A 152 SHEET 4 AA1 6 LEU A 204 SER A 215 1 O ILE A 206 N GLN A 162 SHEET 5 AA1 6 ILE A 189 LYS A 198 -1 N GLY A 197 O SER A 205 SHEET 6 AA1 6 LEU A 133 SER A 143 -1 N LEU A 133 O GLY A 194 SHEET 1 AA2 8 PHE A 271 GLU A 272 0 SHEET 2 AA2 8 LYS A 321 PHE A 329 1 O TYR A 323 N PHE A 271 SHEET 3 AA2 8 GLU A 341 ALA A 350 -1 O SER A 344 N GLY A 326 SHEET 4 AA2 8 THR A 550 GLY A 556 -1 O LEU A 555 N CYS A 345 SHEET 5 AA2 8 LYS A 499 THR A 506 -1 N ASN A 503 O GLY A 554 SHEET 6 AA2 8 LEU A 492 ILE A 496 -1 N LEU A 492 O ALA A 504 SHEET 7 AA2 8 PHE A 466 VAL A 469 -1 N ILE A 468 O GLU A 493 SHEET 8 AA2 8 LYS A 400 SER A 402 1 N VAL A 401 O PHE A 467 SHEET 1 AA3 3 MET A 278 ASN A 279 0 SHEET 2 AA3 3 LEU A 299 LEU A 303 -1 O TYR A 302 N ASN A 279 SHEET 3 AA3 3 ILE A 291 HIS A 294 -1 N THR A 292 O LEU A 301 SHEET 1 AA4 2 LYS A 377 TYR A 380 0 SHEET 2 AA4 2 ILE A 390 ASP A 393 -1 O ILE A 392 N ILE A 378 SHEET 1 AA5 6 LEU B 133 VAL B 142 0 SHEET 2 AA5 6 LEU B 149 GLY B 156 -1 O ASP B 153 N MET B 140 SHEET 3 AA5 6 GLU B 159 ASN B 166 -1 O VAL B 163 N PHE B 152 SHEET 4 AA5 6 LEU B 204 SER B 215 1 O ILE B 206 N GLN B 162 SHEET 5 AA5 6 ILE B 189 LYS B 198 -1 N VAL B 193 O LYS B 209 SHEET 6 AA5 6 LEU B 133 VAL B 142 -1 N LEU B 133 O GLY B 194 SHEET 1 AA6 8 PHE B 271 GLU B 272 0 SHEET 2 AA6 8 LYS B 321 PHE B 329 1 O TYR B 323 N PHE B 271 SHEET 3 AA6 8 GLU B 341 ALA B 350 -1 O TYR B 348 N VAL B 322 SHEET 4 AA6 8 THR B 550 GLY B 556 -1 O LEU B 555 N CYS B 345 SHEET 5 AA6 8 LYS B 499 THR B 506 -1 N ASN B 503 O GLY B 554 SHEET 6 AA6 8 ARG B 491 ILE B 496 -1 N LEU B 492 O ALA B 504 SHEET 7 AA6 8 PHE B 466 VAL B 469 -1 N PHE B 466 O PHE B 495 SHEET 8 AA6 8 LYS B 400 SER B 402 1 N VAL B 401 O VAL B 469 SHEET 1 AA7 3 MET B 278 ASN B 279 0 SHEET 2 AA7 3 LEU B 299 LEU B 303 -1 O TYR B 302 N ASN B 279 SHEET 3 AA7 3 ILE B 291 HIS B 294 -1 N THR B 292 O LEU B 301 SHEET 1 AA8 2 LYS B 377 TYR B 380 0 SHEET 2 AA8 2 ILE B 390 ASP B 393 -1 O ILE B 390 N TYR B 380 SSBOND 1 CYS A 517 CYS A 540 1555 1555 2.04 SSBOND 2 CYS B 517 CYS B 540 1555 1555 2.05 CISPEP 1 PRO A 396 PRO A 397 0 1.81 CISPEP 2 ASN A 441 PRO A 442 0 -1.69 CISPEP 3 PRO B 396 PRO B 397 0 -7.38 CISPEP 4 ASN B 441 PRO B 442 0 -7.20 CRYST1 71.671 99.494 171.420 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005834 0.00000