HEADER DE NOVO PROTEIN 06-AUG-23 8KC5 TITLE DE NOVO DESIGN PROTEIN -T09 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGN PROTEIN -T09; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WANG,Y.LIU REVDAT 1 07-AUG-24 8KC5 0 JRNL AUTH S.WANG,Y.LIU JRNL TITL DE NOVO DESIGN PROTEIN -T09 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 20181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3000 - 6.9800 0.96 1229 141 0.1604 0.1925 REMARK 3 2 6.9600 - 5.5400 0.97 1243 148 0.2249 0.2329 REMARK 3 3 5.5400 - 4.8400 0.98 1279 142 0.1867 0.1943 REMARK 3 4 4.8400 - 4.4000 0.97 1255 128 0.1670 0.2115 REMARK 3 5 4.4000 - 4.0800 0.97 1254 122 0.1638 0.2349 REMARK 3 6 4.0800 - 3.8400 0.98 1256 143 0.1910 0.1985 REMARK 3 7 3.8400 - 3.6500 0.97 1262 137 0.1817 0.2472 REMARK 3 8 3.6500 - 3.4900 0.98 1248 147 0.1961 0.2166 REMARK 3 9 3.4900 - 3.3600 0.98 1244 141 0.1867 0.2226 REMARK 3 10 3.3600 - 3.2400 0.98 1270 133 0.2018 0.2592 REMARK 3 11 3.2400 - 3.1400 0.98 1266 142 0.2176 0.3044 REMARK 3 12 3.1400 - 3.0500 0.98 1261 131 0.2211 0.2969 REMARK 3 13 3.0500 - 2.9700 0.97 1268 136 0.2091 0.2476 REMARK 3 14 2.9700 - 2.9000 0.97 1260 140 0.2154 0.2854 REMARK 3 15 2.9000 - 2.8300 0.98 1250 143 0.2330 0.3050 REMARK 3 16 2.8300 - 2.7700 0.97 1278 147 0.2358 0.3632 REMARK 3 17 2.7700 - 2.7200 0.98 1222 131 0.2435 0.3674 REMARK 3 18 2.7200 - 2.6700 0.97 1287 119 0.2482 0.3703 REMARK 3 19 2.6600 - 2.6200 0.97 1271 136 0.2503 0.3134 REMARK 3 20 2.6200 - 2.5700 0.97 1217 154 0.2740 0.3396 REMARK 3 21 2.5700 - 2.5300 0.97 1247 144 0.2751 0.3447 REMARK 3 22 2.5300 - 2.4900 0.97 1266 129 0.2649 0.3346 REMARK 3 23 2.4900 - 2.4600 0.97 1257 139 0.2772 0.3612 REMARK 3 24 2.4600 - 2.4200 0.96 1186 156 0.2800 0.3338 REMARK 3 25 2.4200 - 2.3900 0.97 1303 122 0.2986 0.3350 REMARK 3 26 2.3900 - 2.3600 0.97 1215 152 0.3166 0.3856 REMARK 3 27 2.3600 - 2.3300 0.97 1272 136 0.3336 0.4155 REMARK 3 28 2.3300 - 2.3000 0.97 1239 124 0.3285 0.4049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.361 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.647 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3318 REMARK 3 ANGLE : 0.506 4530 REMARK 3 CHIRALITY : 0.040 605 REMARK 3 PLANARITY : 0.004 571 REMARK 3 DIHEDRAL : 4.524 490 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0382 -16.8995 10.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.6424 T22: 0.3535 REMARK 3 T33: 0.4115 T12: 0.0063 REMARK 3 T13: -0.1665 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 6.0365 L22: 6.5025 REMARK 3 L33: 3.1626 L12: 4.7650 REMARK 3 L13: 1.2287 L23: 0.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.5765 S12: -0.2981 S13: -0.5364 REMARK 3 S21: 0.7645 S22: -0.5079 S23: -0.6957 REMARK 3 S31: 0.1805 S32: 0.0052 S33: -0.1155 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4840 -19.7363 8.3505 REMARK 3 T TENSOR REMARK 3 T11: 0.4614 T22: 0.3050 REMARK 3 T33: 0.3318 T12: 0.0649 REMARK 3 T13: -0.0852 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.5950 L22: 8.3386 REMARK 3 L33: 3.9507 L12: 4.7010 REMARK 3 L13: 0.6425 L23: 0.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: -0.2950 S13: 0.3099 REMARK 3 S21: 0.1062 S22: -0.5305 S23: 0.4364 REMARK 3 S31: -0.2867 S32: -0.3940 S33: 0.4286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9159 -24.2534 2.9554 REMARK 3 T TENSOR REMARK 3 T11: 0.7424 T22: 0.3602 REMARK 3 T33: 0.4606 T12: 0.0782 REMARK 3 T13: 0.0145 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 9.6797 L22: 2.1033 REMARK 3 L33: 2.2817 L12: 1.4555 REMARK 3 L13: -3.3616 L23: 4.5619 REMARK 3 S TENSOR REMARK 3 S11: 0.4777 S12: 0.0781 S13: 0.2438 REMARK 3 S21: -0.2248 S22: -0.6837 S23: 0.9666 REMARK 3 S31: -1.0289 S32: -0.6188 S33: 0.2437 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2660 -17.9361 -3.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.7987 T22: 0.3272 REMARK 3 T33: 0.5372 T12: 0.0987 REMARK 3 T13: -0.0450 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 7.1777 L22: 7.2377 REMARK 3 L33: 6.0549 L12: 4.9230 REMARK 3 L13: 2.7786 L23: -2.8303 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: 0.5461 S13: 1.3544 REMARK 3 S21: -0.5890 S22: 0.1695 S23: 0.4984 REMARK 3 S31: 0.8766 S32: -0.6966 S33: 0.4407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8311 -21.9439 -10.1704 REMARK 3 T TENSOR REMARK 3 T11: 1.2531 T22: 0.2685 REMARK 3 T33: 0.8353 T12: -0.0026 REMARK 3 T13: -0.4451 T23: -0.1212 REMARK 3 L TENSOR REMARK 3 L11: 9.8112 L22: 8.2913 REMARK 3 L33: 9.5088 L12: 3.3276 REMARK 3 L13: -0.2469 L23: -0.2247 REMARK 3 S TENSOR REMARK 3 S11: -1.0559 S12: 0.6249 S13: -0.2227 REMARK 3 S21: -1.6685 S22: 0.2037 S23: 2.4606 REMARK 3 S31: 0.9380 S32: -0.3060 S33: 0.5023 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3274 -12.7281 50.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.5791 T22: 0.3300 REMARK 3 T33: 0.3810 T12: -0.1017 REMARK 3 T13: -0.1577 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 4.8460 L22: 6.2128 REMARK 3 L33: 5.9355 L12: -1.6081 REMARK 3 L13: -0.6494 L23: -1.4223 REMARK 3 S TENSOR REMARK 3 S11: 0.1701 S12: -0.4640 S13: 0.2854 REMARK 3 S21: 1.0984 S22: -0.3341 S23: -0.4179 REMARK 3 S31: -0.4571 S32: 0.7889 S33: 0.2181 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1744 -20.9656 37.7581 REMARK 3 T TENSOR REMARK 3 T11: 0.3518 T22: 0.7086 REMARK 3 T33: 0.5775 T12: 0.0514 REMARK 3 T13: 0.0099 T23: 0.1013 REMARK 3 L TENSOR REMARK 3 L11: 5.2642 L22: 5.4076 REMARK 3 L33: 5.1937 L12: 0.2386 REMARK 3 L13: -0.7225 L23: -0.0671 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.6230 S13: -0.2164 REMARK 3 S21: -0.3399 S22: -0.4950 S23: -1.2375 REMARK 3 S31: 0.0959 S32: 1.5302 S33: 0.4182 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0203 -13.2421 31.3549 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.3996 REMARK 3 T33: 0.3146 T12: -0.0381 REMARK 3 T13: 0.0415 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.0040 L22: 2.2433 REMARK 3 L33: 6.3640 L12: -2.9655 REMARK 3 L13: 1.7867 L23: -2.3586 REMARK 3 S TENSOR REMARK 3 S11: -0.5991 S12: 0.3476 S13: -0.1373 REMARK 3 S21: -0.9459 S22: 0.2599 S23: -0.8940 REMARK 3 S31: 0.2225 S32: 0.1755 S33: 0.4136 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1301 -10.4624 26.5931 REMARK 3 T TENSOR REMARK 3 T11: 0.5665 T22: 0.5744 REMARK 3 T33: 0.4404 T12: 0.0588 REMARK 3 T13: 0.0851 T23: 0.1718 REMARK 3 L TENSOR REMARK 3 L11: 4.4226 L22: 6.3469 REMARK 3 L33: 5.0372 L12: -3.0256 REMARK 3 L13: 0.8109 L23: -0.4432 REMARK 3 S TENSOR REMARK 3 S11: 0.6715 S12: 0.8707 S13: 0.7150 REMARK 3 S21: -1.2879 S22: -0.7310 S23: -0.9544 REMARK 3 S31: -0.0239 S32: 0.9965 S33: 0.0943 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7443 -6.1302 29.4434 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2808 REMARK 3 T33: 0.2974 T12: 0.0023 REMARK 3 T13: -0.0278 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.9212 L22: 2.7423 REMARK 3 L33: 9.0483 L12: -2.1763 REMARK 3 L13: 0.3931 L23: 0.6965 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.0358 S13: 0.1848 REMARK 3 S21: 0.0891 S22: -0.3118 S23: -0.4372 REMARK 3 S31: 0.0404 S32: -0.0985 S33: 0.2228 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9247 -4.0059 34.3376 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.2847 REMARK 3 T33: 0.2849 T12: -0.0456 REMARK 3 T13: 0.0077 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 2.9197 L22: 7.2707 REMARK 3 L33: 5.1491 L12: -3.1756 REMARK 3 L13: 0.4984 L23: 0.4941 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.0415 S13: 0.0688 REMARK 3 S21: -0.0041 S22: -0.2730 S23: 0.2701 REMARK 3 S31: -0.4018 S32: -0.2329 S33: 0.2128 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1289 0.4857 42.0997 REMARK 3 T TENSOR REMARK 3 T11: 0.4588 T22: 0.3579 REMARK 3 T33: 0.3914 T12: -0.0065 REMARK 3 T13: 0.0336 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 2.7657 L22: 8.5878 REMARK 3 L33: 6.7533 L12: 0.5690 REMARK 3 L13: 6.7352 L23: 1.7490 REMARK 3 S TENSOR REMARK 3 S11: 0.6120 S12: -0.5836 S13: -0.6697 REMARK 3 S21: 0.3912 S22: -0.4002 S23: 0.1720 REMARK 3 S31: 0.3963 S32: -0.7558 S33: -0.3691 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4108 -3.5103 49.8835 REMARK 3 T TENSOR REMARK 3 T11: 0.6686 T22: 0.2420 REMARK 3 T33: 0.4631 T12: -0.0537 REMARK 3 T13: 0.0167 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 5.2786 L22: 5.6730 REMARK 3 L33: 9.1945 L12: -5.3821 REMARK 3 L13: 1.1058 L23: -1.5768 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.1652 S13: 0.5613 REMARK 3 S21: 0.8842 S22: -0.0846 S23: 0.0970 REMARK 3 S31: -0.2394 S32: 0.1211 S33: 0.0021 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0718 -14.1606 -13.2765 REMARK 3 T TENSOR REMARK 3 T11: 1.2224 T22: 0.4550 REMARK 3 T33: 0.4160 T12: 0.1166 REMARK 3 T13: -0.1556 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 6.1227 L22: 6.6148 REMARK 3 L33: 8.4403 L12: 1.2880 REMARK 3 L13: 1.6053 L23: 0.1859 REMARK 3 S TENSOR REMARK 3 S11: -0.2769 S12: 1.0387 S13: 0.2871 REMARK 3 S21: -1.9949 S22: -0.0476 S23: 0.1229 REMARK 3 S31: 0.6987 S32: 0.0349 S33: 0.3238 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9177 -6.5161 -9.3341 REMARK 3 T TENSOR REMARK 3 T11: 0.7672 T22: 0.4212 REMARK 3 T33: 0.4536 T12: 0.1493 REMARK 3 T13: 0.1070 T23: 0.0780 REMARK 3 L TENSOR REMARK 3 L11: 6.0908 L22: 7.0888 REMARK 3 L33: 5.0211 L12: 1.5027 REMARK 3 L13: 1.2457 L23: -0.5129 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.5082 S13: -0.3786 REMARK 3 S21: -1.4353 S22: -0.2530 S23: -0.6259 REMARK 3 S31: 0.2285 S32: 0.8324 S33: 0.3448 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2637 -4.8071 2.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.6067 REMARK 3 T33: 0.5381 T12: -0.0154 REMARK 3 T13: 0.0375 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 10.1927 L22: 9.3011 REMARK 3 L33: 2.6611 L12: -0.6975 REMARK 3 L13: 3.9818 L23: -2.0957 REMARK 3 S TENSOR REMARK 3 S11: 0.5056 S12: -0.2220 S13: 0.4749 REMARK 3 S21: 0.0684 S22: -0.4876 S23: -1.2880 REMARK 3 S31: 0.3773 S32: 1.2894 S33: 0.0975 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5882 -10.4682 7.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.6641 T22: 0.5212 REMARK 3 T33: 0.5088 T12: 0.0174 REMARK 3 T13: -0.2857 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 5.3952 L22: 5.4380 REMARK 3 L33: 7.6818 L12: 0.8570 REMARK 3 L13: -1.3055 L23: -1.4799 REMARK 3 S TENSOR REMARK 3 S11: 0.3672 S12: -0.9223 S13: -0.6543 REMARK 3 S21: 1.8063 S22: -0.0793 S23: -0.8360 REMARK 3 S31: 0.4522 S32: 0.1601 S33: -0.1469 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5806 -12.2556 15.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.8868 T22: 0.7601 REMARK 3 T33: 0.5950 T12: -0.1005 REMARK 3 T13: -0.2142 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 2.4496 L22: 8.1892 REMARK 3 L33: 2.1896 L12: -1.0307 REMARK 3 L13: 1.4954 L23: -3.7324 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: 0.2720 S13: 0.0395 REMARK 3 S21: -1.2927 S22: 0.0356 S23: -1.1320 REMARK 3 S31: -0.5849 S32: 1.4277 S33: -0.2997 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8KC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300039743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M IMIDAZOLE MALATE PH5.5 33% W/V REMARK 280 PEG600, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.70750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 206 REMARK 465 LYS A 207 REMARK 465 GLU A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 GLY B 0 REMARK 465 PRO B 206 REMARK 465 GLU B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 12 CG OD1 OD2 REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 ASP B 15 CG OD1 OD2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ASP B 37 CG OD1 OD2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 LEU B 114 CG CD1 CD2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASP B 205 CG OD1 OD2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 -124.95 58.93 REMARK 500 LYS B 62 -108.33 48.86 REMARK 500 SER B 188 -54.06 -120.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 8KC5 A 0 236 PDB 8KC5 8KC5 0 236 DBREF 8KC5 B 0 236 PDB 8KC5 8KC5 0 236 SEQRES 1 A 237 GLY ILE GLU ILE VAL LEU ALA VAL SER SER SER VAL ASP SEQRES 2 A 237 ARG LYS ASP VAL VAL ASP ILE ILE ASN TYR ILE ASN GLU SEQRES 3 A 237 LYS GLY ILE ASP VAL TRP LEU TRP LEU ASP ALA ASP LYS SEQRES 4 A 237 VAL GLU GLU ALA ILE GLU LEU ILE GLU GLU ALA VAL LYS SEQRES 5 A 237 ALA GLY VAL LYS GLY ILE VAL LEU ARG THR LYS LYS LEU SEQRES 6 A 237 LYS LEU GLU ASP ILE LYS LYS ILE ILE ASP ILE LEU ASN SEQRES 7 A 237 LYS TYR GLY VAL HIS LEU LEU ILE ASP THR GLU LEU GLU SEQRES 8 A 237 GLU GLU GLU ILE ARG ALA ILE VAL ASP LEU ALA GLY PRO SEQRES 9 A 237 GLU ARG THR THR ILE GLY LEU LYS TYR ASP LEU GLY GLU SEQRES 10 A 237 LYS ARG GLU ARG LEU ILE ARG THR ALA VAL GLU LEU GLY SEQRES 11 A 237 VAL ARG VAL LEU LEU THR ASP VAL THR ASP ARG ALA GLN SEQRES 12 A 237 ALA ALA ARG GLY LEU ALA LEU ALA GLY ASP ARG LEU GLU SEQRES 13 A 237 LEU LEU LEU ASP VAL ASP ARG THR ALA LEU ALA ASP LEU SEQRES 14 A 237 ARG ALA THR LEU ALA LEU ALA ALA LYS ASN PRO LYS VAL SEQRES 15 A 237 GLY LEU TYR LEU ARG VAL SER ARG VAL ASP LEU ALA ALA SEQRES 16 A 237 ARG VAL ARG ALA VAL ALA ALA GLU VAL ALA ASP PRO LYS SEQRES 17 A 237 ARG LEU ALA PHE VAL LEU ASP ALA LYS ASN ALA ALA GLU SEQRES 18 A 237 ALA LYS ALA LEU ILE ASP ALA LEU LEU GLU HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 GLY ILE GLU ILE VAL LEU ALA VAL SER SER SER VAL ASP SEQRES 2 B 237 ARG LYS ASP VAL VAL ASP ILE ILE ASN TYR ILE ASN GLU SEQRES 3 B 237 LYS GLY ILE ASP VAL TRP LEU TRP LEU ASP ALA ASP LYS SEQRES 4 B 237 VAL GLU GLU ALA ILE GLU LEU ILE GLU GLU ALA VAL LYS SEQRES 5 B 237 ALA GLY VAL LYS GLY ILE VAL LEU ARG THR LYS LYS LEU SEQRES 6 B 237 LYS LEU GLU ASP ILE LYS LYS ILE ILE ASP ILE LEU ASN SEQRES 7 B 237 LYS TYR GLY VAL HIS LEU LEU ILE ASP THR GLU LEU GLU SEQRES 8 B 237 GLU GLU GLU ILE ARG ALA ILE VAL ASP LEU ALA GLY PRO SEQRES 9 B 237 GLU ARG THR THR ILE GLY LEU LYS TYR ASP LEU GLY GLU SEQRES 10 B 237 LYS ARG GLU ARG LEU ILE ARG THR ALA VAL GLU LEU GLY SEQRES 11 B 237 VAL ARG VAL LEU LEU THR ASP VAL THR ASP ARG ALA GLN SEQRES 12 B 237 ALA ALA ARG GLY LEU ALA LEU ALA GLY ASP ARG LEU GLU SEQRES 13 B 237 LEU LEU LEU ASP VAL ASP ARG THR ALA LEU ALA ASP LEU SEQRES 14 B 237 ARG ALA THR LEU ALA LEU ALA ALA LYS ASN PRO LYS VAL SEQRES 15 B 237 GLY LEU TYR LEU ARG VAL SER ARG VAL ASP LEU ALA ALA SEQRES 16 B 237 ARG VAL ARG ALA VAL ALA ALA GLU VAL ALA ASP PRO LYS SEQRES 17 B 237 ARG LEU ALA PHE VAL LEU ASP ALA LYS ASN ALA ALA GLU SEQRES 18 B 237 ALA LYS ALA LEU ILE ASP ALA LEU LEU GLU HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS FORMUL 3 HOH *68(H2 O) HELIX 1 AA1 ASP A 12 LYS A 26 1 15 HELIX 2 AA2 LYS A 38 GLY A 53 1 16 HELIX 3 AA3 LYS A 65 TYR A 79 1 15 HELIX 4 AA4 GLU A 90 GLY A 102 1 13 HELIX 5 AA5 GLY A 115 GLY A 129 1 15 HELIX 6 AA6 ASP A 139 GLY A 151 1 13 HELIX 7 AA7 ASP A 161 THR A 163 5 3 HELIX 8 AA8 ALA A 164 ASN A 178 1 15 HELIX 9 AA9 ARG A 189 ALA A 204 1 16 HELIX 10 AB1 ASN A 217 LEU A 229 1 13 HELIX 11 AB2 ASP B 12 LYS B 26 1 15 HELIX 12 AB3 LYS B 38 ALA B 52 1 15 HELIX 13 AB4 LYS B 65 ILE B 72 1 8 HELIX 14 AB5 ILE B 72 TYR B 79 1 8 HELIX 15 AB6 GLU B 90 GLY B 102 1 13 HELIX 16 AB7 GLY B 115 LEU B 128 1 14 HELIX 17 AB8 ASP B 139 GLY B 151 1 13 HELIX 18 AB9 ASP B 161 THR B 163 5 3 HELIX 19 AC1 ALA B 164 ASN B 178 1 15 HELIX 20 AC2 ARG B 189 ALA B 204 1 16 HELIX 21 AC3 ASN B 217 LEU B 228 1 12 SHEET 1 AA110 GLU A 2 SER A 8 0 SHEET 2 AA110 ASP A 29 ASP A 35 1 O TRP A 33 N LEU A 5 SHEET 3 AA110 GLY A 56 ARG A 60 1 O ARG A 60 N LEU A 34 SHEET 4 AA110 HIS A 82 ILE A 85 1 O HIS A 82 N LEU A 59 SHEET 5 AA110 THR A 106 LYS A 111 1 O GLY A 109 N ILE A 85 SHEET 6 AA110 ARG A 131 VAL A 137 1 O LEU A 133 N ILE A 108 SHEET 7 AA110 LEU A 154 ASP A 159 1 O LEU A 157 N LEU A 134 SHEET 8 AA110 GLY A 182 ARG A 186 1 O TYR A 184 N LEU A 158 SHEET 9 AA110 ALA A 210 ASP A 214 1 O ALA A 210 N LEU A 185 SHEET 10 AA110 GLU A 2 SER A 8 1 N VAL A 4 O PHE A 211 SHEET 1 AA210 GLU B 2 SER B 8 0 SHEET 2 AA210 VAL B 30 ASP B 35 1 O TRP B 31 N LEU B 5 SHEET 3 AA210 GLY B 56 ARG B 60 1 O VAL B 58 N LEU B 32 SHEET 4 AA210 HIS B 82 ILE B 85 1 O HIS B 82 N LEU B 59 SHEET 5 AA210 THR B 106 LYS B 111 1 O GLY B 109 N ILE B 85 SHEET 6 AA210 ARG B 131 VAL B 137 1 O LEU B 133 N ILE B 108 SHEET 7 AA210 LEU B 154 ASP B 159 1 O GLU B 155 N LEU B 134 SHEET 8 AA210 GLY B 182 ARG B 186 1 O TYR B 184 N LEU B 156 SHEET 9 AA210 ALA B 210 ASP B 214 1 O VAL B 212 N LEU B 185 SHEET 10 AA210 GLU B 2 SER B 8 1 N VAL B 4 O PHE B 211 CRYST1 46.026 59.415 85.421 90.00 94.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021727 0.000000 0.001836 0.00000 SCALE2 0.000000 0.016831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011748 0.00000