HEADER VIRAL PROTEIN 10-AUG-23 8KDZ TITLE DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL-L-HOMOCYSTEINE AND TITLE 2 CAFFEIC ACID PHENETHYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GENOME POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS INHIBITOR, METHYLTRANSFERASE, DENGUE 3, ANTIVIRAL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BHUTKAR,A.KUMAR,S.TOMAR,P.KUMAR REVDAT 1 19-FEB-25 8KDZ 0 JRNL AUTH M.BHUTKAR,A.KUMAR,S.TOMAR,P.KUMAR JRNL TITL DECIPHERING ANTIVIRAL MECHANISMS OF HERBACETIN AND CAFFEIC JRNL TITL 2 ACID PHENETHYL ESTER AGAINST CHIKUNGUNYA AND DENGUE VIRUS, JRNL TITL 3 WITH INSIGHTS INTO DENGUE METHYLTRANSFERASE-CAPE CRYSTAL JRNL TITL 4 STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 108535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.004 REMARK 3 FREE R VALUE TEST SET COUNT : 924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1276 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.71100 REMARK 3 B22 (A**2) : -2.12200 REMARK 3 B33 (A**2) : 4.83300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4274 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5764 ; 1.558 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 5.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;32.516 ;20.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 784 ;18.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3202 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1941 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2882 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 150 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2052 ; 1.501 ; 2.742 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2558 ; 2.489 ; 4.109 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2222 ; 2.136 ; 3.030 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3206 ; 3.320 ; 4.438 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 262 NULL REMARK 3 1 B 7 B 262 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 8KDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 23.056 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4R8R REMARK 200 REMARK 200 REMARK: SQUARE SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000 100 MM TRIS 200 MM NACL REMARK 280 20 MM TRISODIUM CITRATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.36100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.18000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.36100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 263 REMARK 465 VAL A 264 REMARK 465 ASN A 265 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 HIS B 263 REMARK 465 VAL B 264 REMARK 465 ASN B 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 76 OE1 GLU B 138 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 163 CG - CD - NE ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 262 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 262 CB - CG - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -45.51 80.18 REMARK 500 LYS A 173 86.00 -155.66 REMARK 500 HIS B 52 -47.02 79.33 REMARK 500 LYS B 173 85.04 -154.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 456 DISTANCE = 6.27 ANGSTROMS DBREF 8KDZ A 1 265 UNP C1KBQ3 C1KBQ3_9FLAV 2491 2755 DBREF 8KDZ B 1 265 UNP C1KBQ3 C1KBQ3_9FLAV 2491 2755 SEQADV 8KDZ HIS A -18 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -17 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -16 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -15 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -14 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -13 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER A -12 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER A -11 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ GLY A -10 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ LEU A -9 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ VAL A -8 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ PRO A -7 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ ARG A -6 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ GLY A -5 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER A -4 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS A -3 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ MET A -2 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ ALA A -1 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER A 0 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -18 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -17 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -16 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -15 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -14 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -13 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER B -12 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER B -11 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ GLY B -10 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ LEU B -9 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ VAL B -8 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ PRO B -7 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ ARG B -6 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ GLY B -5 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER B -4 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ HIS B -3 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ MET B -2 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ ALA B -1 UNP C1KBQ3 EXPRESSION TAG SEQADV 8KDZ SER B 0 UNP C1KBQ3 EXPRESSION TAG SEQRES 1 A 284 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 284 GLY SER HIS MET ALA SER GLY THR GLY SER GLN GLY GLU SEQRES 3 A 284 THR LEU GLY GLU LYS TRP LYS LYS LYS LEU ASN GLN LEU SEQRES 4 A 284 SER ARG LYS GLU PHE ASP LEU TYR LYS LYS SER GLY ILE SEQRES 5 A 284 THR GLU VAL ASP ARG THR GLU ALA LYS GLU GLY LEU LYS SEQRES 6 A 284 ARG GLY GLU THR THR HIS HIS ALA VAL SER ARG GLY SER SEQRES 7 A 284 ALA LYS LEU GLN TRP PHE VAL GLU ARG ASN MET VAL ILE SEQRES 8 A 284 PRO GLU GLY ARG VAL ILE ASP LEU GLY CYS GLY ARG GLY SEQRES 9 A 284 GLY TRP SER TYR TYR CYS ALA GLY LEU LYS LYS VAL THR SEQRES 10 A 284 GLU VAL ARG GLY TYR THR LYS GLY GLY PRO GLY HIS GLU SEQRES 11 A 284 GLU PRO VAL PRO MET SER THR TYR GLY TRP ASN ILE VAL SEQRES 12 A 284 LYS LEU MET SER GLY LYS ASP VAL PHE TYR LEU PRO PRO SEQRES 13 A 284 GLU LYS CYS ASP THR LEU LEU CYS ASP ILE GLY GLU SER SEQRES 14 A 284 SER PRO SER PRO THR VAL GLU GLU SER ARG THR ILE ARG SEQRES 15 A 284 VAL LEU LYS MET VAL GLU PRO TRP LEU LYS ASN ASN GLN SEQRES 16 A 284 PHE CYS ILE LYS VAL LEU ASN PRO TYR MET PRO THR VAL SEQRES 17 A 284 ILE GLU HIS LEU GLU ARG LEU GLN ARG LYS HIS GLY GLY SEQRES 18 A 284 MET LEU VAL ARG ASN PRO LEU SER ARG ASN SER THR HIS SEQRES 19 A 284 GLU MET TYR TRP ILE SER ASN GLY THR GLY ASN ILE VAL SEQRES 20 A 284 SER SER VAL ASN MET VAL SER ARG LEU LEU LEU ASN ARG SEQRES 21 A 284 PHE THR MET THR HIS ARG ARG PRO THR ILE GLU LYS ASP SEQRES 22 A 284 VAL ASP LEU GLY ALA GLY THR ARG HIS VAL ASN SEQRES 1 B 284 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 284 GLY SER HIS MET ALA SER GLY THR GLY SER GLN GLY GLU SEQRES 3 B 284 THR LEU GLY GLU LYS TRP LYS LYS LYS LEU ASN GLN LEU SEQRES 4 B 284 SER ARG LYS GLU PHE ASP LEU TYR LYS LYS SER GLY ILE SEQRES 5 B 284 THR GLU VAL ASP ARG THR GLU ALA LYS GLU GLY LEU LYS SEQRES 6 B 284 ARG GLY GLU THR THR HIS HIS ALA VAL SER ARG GLY SER SEQRES 7 B 284 ALA LYS LEU GLN TRP PHE VAL GLU ARG ASN MET VAL ILE SEQRES 8 B 284 PRO GLU GLY ARG VAL ILE ASP LEU GLY CYS GLY ARG GLY SEQRES 9 B 284 GLY TRP SER TYR TYR CYS ALA GLY LEU LYS LYS VAL THR SEQRES 10 B 284 GLU VAL ARG GLY TYR THR LYS GLY GLY PRO GLY HIS GLU SEQRES 11 B 284 GLU PRO VAL PRO MET SER THR TYR GLY TRP ASN ILE VAL SEQRES 12 B 284 LYS LEU MET SER GLY LYS ASP VAL PHE TYR LEU PRO PRO SEQRES 13 B 284 GLU LYS CYS ASP THR LEU LEU CYS ASP ILE GLY GLU SER SEQRES 14 B 284 SER PRO SER PRO THR VAL GLU GLU SER ARG THR ILE ARG SEQRES 15 B 284 VAL LEU LYS MET VAL GLU PRO TRP LEU LYS ASN ASN GLN SEQRES 16 B 284 PHE CYS ILE LYS VAL LEU ASN PRO TYR MET PRO THR VAL SEQRES 17 B 284 ILE GLU HIS LEU GLU ARG LEU GLN ARG LYS HIS GLY GLY SEQRES 18 B 284 MET LEU VAL ARG ASN PRO LEU SER ARG ASN SER THR HIS SEQRES 19 B 284 GLU MET TYR TRP ILE SER ASN GLY THR GLY ASN ILE VAL SEQRES 20 B 284 SER SER VAL ASN MET VAL SER ARG LEU LEU LEU ASN ARG SEQRES 21 B 284 PHE THR MET THR HIS ARG ARG PRO THR ILE GLU LYS ASP SEQRES 22 B 284 VAL ASP LEU GLY ALA GLY THR ARG HIS VAL ASN HET SAH A 301 26 HET QAP A 302 21 HET QAP A 303 21 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM QAP 2-PHENYLETHYL (2E)-3-(3,4-DIHYDROXYPHENYL)PROP-2-ENOATE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 QAP 2(C17 H16 O4) FORMUL 7 HOH *124(H2 O) HELIX 1 AA1 THR A 8 GLN A 19 1 12 HELIX 2 AA2 SER A 21 LYS A 30 1 10 HELIX 3 AA3 ARG A 38 ARG A 47 1 10 HELIX 4 AA4 ARG A 57 GLU A 67 1 11 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 LEU A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 169 1 17 HELIX 9 AA9 PRO A 170 LEU A 172 5 3 HELIX 10 AB1 MET A 186 GLY A 201 1 16 HELIX 11 AB2 ASN A 226 ARG A 241 1 16 HELIX 12 AB3 THR B 8 GLN B 19 1 12 HELIX 13 AB4 SER B 21 LYS B 29 1 9 HELIX 14 AB5 ARG B 38 ARG B 47 1 10 HELIX 15 AB6 ARG B 57 GLU B 67 1 11 HELIX 16 AB7 GLY B 85 ALA B 92 1 8 HELIX 17 AB8 GLY B 120 ASN B 122 5 3 HELIX 18 AB9 ASP B 131 LEU B 135 5 5 HELIX 19 AC1 SER B 153 GLU B 169 1 17 HELIX 20 AC2 PRO B 170 LEU B 172 5 3 HELIX 21 AC3 MET B 186 GLY B 201 1 16 HELIX 22 AC4 ASN B 226 MET B 244 1 19 SHEET 1 AA1 2 THR A 34 ASP A 37 0 SHEET 2 AA1 2 THR A 250 LYS A 253 1 O THR A 250 N GLU A 35 SHEET 1 AA2 7 VAL A 124 MET A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O MET A 127 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 GLN A 176 VAL A 181 1 O GLN A 176 N LEU A 143 SHEET 6 AA2 7 MET A 217 ILE A 220 -1 O MET A 217 N VAL A 181 SHEET 7 AA2 7 MET A 203 VAL A 205 -1 N MET A 203 O ILE A 220 SHEET 1 AA3 2 THR B 34 ASP B 37 0 SHEET 2 AA3 2 THR B 250 LYS B 253 1 O THR B 250 N GLU B 35 SHEET 1 AA4 7 VAL B 124 MET B 127 0 SHEET 2 AA4 7 VAL B 97 TYR B 103 1 N GLY B 102 O MET B 127 SHEET 3 AA4 7 GLY B 75 LEU B 80 1 N VAL B 77 O GLU B 99 SHEET 4 AA4 7 THR B 142 CYS B 145 1 O LEU B 144 N ILE B 78 SHEET 5 AA4 7 GLN B 176 VAL B 181 1 O GLN B 176 N LEU B 143 SHEET 6 AA4 7 MET B 217 ILE B 220 -1 O MET B 217 N VAL B 181 SHEET 7 AA4 7 MET B 203 VAL B 205 -1 N VAL B 205 O TYR B 218 CRYST1 51.648 60.722 184.360 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005424 0.00000