data_8KEB # _entry.id 8KEB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8KEB pdb_00008keb 10.2210/pdb8keb/pdb WWPDB D_1300040176 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8KEB _pdbx_database_status.recvd_initial_deposition_date 2023-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liao, W.' 1 ? 'Huang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of 2'-dG-III riboswitch with 2'-dG ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liao, W.' 1 ? primary 'Huang, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (72-MER)' 23024.611 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn "2'-DEOXY-GUANOSINE" 267.241 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAUUCGUAUAUCCUUAAUGAUAUGGUUUAAGGGCAAUACAUAGAGACCACAAAUUUCUUACUGCGAAUUCU _entity_poly.pdbx_seq_one_letter_code_can GGAUUCGUAUAUCCUUAAUGAUAUGGUUUAAGGGCAAUACAUAGAGACCACAAAUUUCUUACUGCGAAUUCU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 "2'-DEOXY-GUANOSINE" GNG 4 'MAGNESIUM ION' MG 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 U n 1 6 C n 1 7 G n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 U n 1 13 C n 1 14 C n 1 15 U n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 A n 1 31 A n 1 32 G n 1 33 G n 1 34 G n 1 35 C n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 A n 1 42 U n 1 43 A n 1 44 G n 1 45 A n 1 46 G n 1 47 A n 1 48 C n 1 49 C n 1 50 A n 1 51 C n 1 52 A n 1 53 A n 1 54 A n 1 55 U n 1 56 U n 1 57 U n 1 58 C n 1 59 U n 1 60 U n 1 61 A n 1 62 C n 1 63 U n 1 64 G n 1 65 C n 1 66 G n 1 67 A n 1 68 A n 1 69 U n 1 70 U n 1 71 C n 1 72 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 72 _pdbx_entity_src_syn.organism_scientific 'Bacillus sp.' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1409 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GNG non-polymer n "2'-DEOXY-GUANOSINE" ? 'C10 H13 N5 O4' 267.241 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 ? ? ? A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 A 11 11 11 A A A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 U 19 19 19 U U A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 G 34 34 34 G G A . n A 1 35 C 35 35 35 C C A . n A 1 36 A 36 36 36 A A A . n A 1 37 A 37 37 37 A A A . n A 1 38 U 38 38 38 U U A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 U 42 42 42 U U A . n A 1 43 A 43 43 43 A A A . n A 1 44 G 44 44 44 G G A . n A 1 45 A 45 45 45 A A A . n A 1 46 G 46 46 46 G G A . n A 1 47 A 47 47 47 A A A . n A 1 48 C 48 48 48 C C A . n A 1 49 C 49 49 49 C C A . n A 1 50 A 50 50 50 A A A . n A 1 51 C 51 51 51 C C A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 A 54 54 54 A A A . n A 1 55 U 55 55 55 U U A . n A 1 56 U 56 56 56 U U A . n A 1 57 U 57 57 57 U U A . n A 1 58 C 58 58 58 C C A . n A 1 59 U 59 59 59 U U A . n A 1 60 U 60 60 60 U U A . n A 1 61 A 61 61 61 A A A . n A 1 62 C 62 62 62 C C A . n A 1 63 U 63 63 63 U U A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 G 66 66 66 G G A . n A 1 67 A 67 67 67 A A A . n A 1 68 A 68 68 68 A A A . n A 1 69 U 69 69 69 U U A . n A 1 70 U 70 70 70 U U A . n A 1 71 C 71 71 71 C C A . n A 1 72 U 72 72 72 U U A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GNG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GNG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP 1 101 1 GTP GTP A . C 3 GNG 1 102 101 GNG GNG A . D 4 MG 1 103 1 MG MG A . E 4 MG 1 104 2 MG MG A . F 5 NA 1 105 1 NA NA A . G 6 HOH 1 201 1 HOH HOH A . G 6 HOH 2 202 2 HOH HOH A . G 6 HOH 3 203 3 HOH HOH A . G 6 HOH 4 204 4 HOH HOH A . G 6 HOH 5 205 6 HOH HOH A . G 6 HOH 6 206 5 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.710 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8KEB _cell.details ? _cell.formula_units_Z ? _cell.length_a 139.516 _cell.length_a_esd ? _cell.length_b 26.834 _cell.length_b_esd ? _cell.length_c 65.227 _cell.length_c_esd ? _cell.volume 225262.774 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8KEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8KEB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Sodium chloride, 0.01 M Potassium chloride, 0.01 M Magnesium chloride hexahydrate 0.04 M Sodium cacodylate trihydrate pH 6.4, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride, 0.1M Glycine. ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-08-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 71.28 _reflns.entry_id 8KEB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 64.35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11351 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.021 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.031 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1337 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 1.103 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.378 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 80.1 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.704 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 92.29 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8KEB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.20 _refine.ls_d_res_low 34.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11223 _refine.ls_number_reflns_R_free 554 _refine.ls_number_reflns_R_work 10669 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.39 _refine.ls_percent_reflns_R_free 4.94 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2039 _refine.ls_R_factor_R_free 0.2419 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2020 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 41.8279 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3836 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 34.43 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 1562 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1502 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0057 ? 1733 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0955 ? 2694 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0456 ? 362 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0073 ? 73 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.4638 ? 863 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.20 2.42 . . 114 2419 87.07 . . . . 0.4526 . . . . . . . . . . . 0.5395 'X-RAY DIFFRACTION' 2.42 2.77 . . 163 2690 99.13 . . . . 0.3757 . . . . . . . . . . . 0.3977 'X-RAY DIFFRACTION' 2.77 3.49 . . 125 2724 97.04 . . . . 0.2535 . . . . . . . . . . . 0.2648 'X-RAY DIFFRACTION' 3.49 34.43 . . 152 2836 98.22 . . . . 0.1494 . . . . . . . . . . . 0.1954 # _struct.entry_id 8KEB _struct.title ;Crystal structure of 2'-dG-III riboswitch with 2'-dG ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8KEB _struct_keywords.text ;Riboswitch, 2'-Deoxyguanosine, 2'-dG, Aptamer, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8KEB _struct_ref.pdbx_db_accession 8KEB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8KEB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 72 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8KEB _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 72 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 72 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 490 ? 1 MORE -11 ? 1 'SSA (A^2)' 12010 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 2 P ? ? ? 1_555 B GTP . "O3'" ? ? A G 2 A GTP 101 1_555 ? ? ? ? ? ? ? 1.555 ? ? metalc1 metalc ? ? A G 2 O6 ? ? ? 1_555 F NA . NA ? ? A G 2 A NA 105 1_555 ? ? ? ? ? ? ? 2.955 ? ? metalc2 metalc ? ? A U 10 "O2'" ? ? ? 1_555 E MG . MG ? ? A U 10 A MG 104 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc3 metalc ? ? A U 70 O4 ? ? ? 1_555 F NA . NA ? ? A U 70 A NA 105 1_555 ? ? ? ? ? ? ? 3.012 ? ? metalc4 metalc ? ? C GNG . O6 ? ? ? 1_555 E MG . MG ? ? A GNG 102 A MG 104 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 202 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.954 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 205 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 206 1_555 ? ? ? ? ? ? ? 2.223 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 70 O2 ? ? A G 2 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 70 N3 ? ? A G 2 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 69 N3 ? ? A A 3 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 69 O4 ? ? A A 3 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 4 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 4 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 5 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 5 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 6 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 6 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 6 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 7 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 7 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 7 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 64 O6 ? ? A U 8 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 64 N1 ? ? A U 8 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 9 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 9 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 10 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 10 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? A A 11 A G 34 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 11 A G 34 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 41 N7 ? ? A U 12 A A 41 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 41 N6 ? ? A U 12 A A 41 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 13 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 A C 40 O2 ? ? A C 13 A C 40 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 14 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 14 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 14 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 15 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 15 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 30 N1 ? ? A U 16 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 16 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 17 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 17 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 18 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 18 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 19 A U 27 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 19 A U 27 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? A A 21 A A 54 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 21 A A 54 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? A U 22 A G 25 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 22 A A 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 22 A A 53 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? A A 23 A A 52 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? A A 23 A A 52 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 25 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 25 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 25 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 26 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 26 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 26 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 26 A A 54 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 26 A A 54 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 34 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 34 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 34 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 37 N6 ? ? ? 1_555 A U 63 O2 ? ? A A 37 A U 63 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog61 hydrog ? ? A U 42 N3 ? ? ? 1_555 A U 60 O2 ? ? A U 42 A U 60 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog62 hydrog ? ? A U 42 O4 ? ? ? 1_555 A U 60 N3 ? ? A U 42 A U 60 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog63 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 43 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 43 A U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 44 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 44 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 44 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 57 N3 ? ? A A 45 A U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 57 O4 ? ? A A 45 A U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 46 N1 ? ? ? 1_555 A U 56 O2 ? ? A G 46 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A G 46 O6 ? ? ? 1_555 A U 56 N3 ? ? A G 46 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 47 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 47 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 49 A A 53 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 2 ? A G 2 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O4 ? A U 70 ? A U 70 ? 1_555 72.1 ? 2 "O2'" ? A U 10 ? A U 10 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O6 ? C GNG . ? A GNG 102 ? 1_555 74.0 ? 3 O ? G HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 203 ? 1_555 70.0 ? 4 O ? G HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 204 ? 1_555 95.0 ? 5 O ? G HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 204 ? 1_555 146.7 ? 6 O ? G HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 72.6 ? 7 O ? G HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 82.0 ? 8 O ? G HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 64.9 ? 9 O ? G HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 137.6 ? 10 O ? G HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 102.0 ? 11 O ? G HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 68.5 ? 12 O ? G HOH . ? A HOH 205 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 206 ? 1_555 65.1 ? # _pdbx_entry_details.entry_id 8KEB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C6 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 65 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N1 _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 65 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 65 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.82 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -2.48 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.40 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -28.1607722237 -3.52785331333 15.3938905002 0.750868487258 ? -0.0264822378418 ? 0.0477207055593 ? 0.524941478152 ? -0.0514670042928 ? 0.803876835354 ? 1.73378116412 ? -0.536457413186 ? 1.45806135106 ? 0.395012430477 ? -0.628727110244 ? 1.50612934531 ? 0.107875944298 ? -0.303755833328 ? 0.251019484542 ? 0.258615650149 ? 0.216059378322 ? -0.134580293143 ? 0.214168462318 ? -0.63986556458 ? 0.0100447324626 ? 2 'X-RAY DIFFRACTION' ? refined -34.0592841757 -8.51376141464 40.8122675859 0.895399937989 ? -0.00446990623143 ? 0.0101222332799 ? 2.55492705916 ? 0.369411606727 ? 0.88367739843 ? 0.617943730134 ? -0.365575734761 ? 0.409071202577 ? 1.20481657869 ? -0.167770867171 ? 0.502336859906 ? -0.266926559287 ? -2.29996488072 ? 0.0423839902199 ? 0.679961777387 ? 0.59520635023 ? 0.0762610589296 ? -0.699739601498 ? -0.779622697807 ? -0.0656344413534 ? 3 'X-RAY DIFFRACTION' ? refined -41.4243166887 2.57811683185 19.1354516998 0.870209711024 ? 0.208239179542 ? 0.0351831014262 ? 0.957631098822 ? 0.068026632127 ? 0.91968525676 ? 0.26026784849 ? -0.0438116437463 ? 0.022811879072 ? 0.0758417560947 ? 0.0185172729985 ? 0.169374855901 ? 0.388984861691 ? -1.13761748294 ? 0.445005617136 ? 0.187717135218 ? 0.273686261659 ? 0.152898949633 ? 0.192567329554 ? -0.491269726166 ? 0.00161752277448 ? 4 'X-RAY DIFFRACTION' ? refined -24.9881968242 -6.58751309107 23.391221246 0.695279091907 ? 0.0501622134672 ? -0.00447424877902 ? 0.580259834662 ? -0.0243296692498 ? 0.776780614197 ? 4.51170097192 ? -0.36299191247 ? 1.82350145518 ? 1.66877295335 ? -0.458536067107 ? 0.571147470726 ? 0.11277578935 ? -0.981924680387 ? 0.135001532596 ? 0.283679821461 ? 0.223814559439 ? -0.205007888793 ? 0.235032431515 ? -0.85067776306 ? -0.00318013995666 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 B ? A 2 ? B ? A 16 ? ? ;chain 'A' and (resid 2 through 16 ) ; 2 'X-RAY DIFFRACTION' 2 B ? A 17 ? B ? A 31 ? ? ;chain 'A' and (resid 17 through 31 ) ; 3 'X-RAY DIFFRACTION' 3 B ? A 32 ? B ? A 36 ? ? ;chain 'A' and (resid 32 through 36 ) ; 4 'X-RAY DIFFRACTION' 4 B ? A 37 ? B ? A 72 ? ? ;chain 'A' and (resid 37 through 72 ) ; # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id G _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id G _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GNG "O5'" O N N 111 GNG "C5'" C N N 112 GNG "C4'" C N R 113 GNG "O4'" O N N 114 GNG "C1'" C N R 115 GNG N9 N Y N 116 GNG C8 C Y N 117 GNG N7 N Y N 118 GNG C5 C Y N 119 GNG C4 C Y N 120 GNG N3 N N N 121 GNG C2 C N N 122 GNG N1 N N N 123 GNG C6 C N N 124 GNG O6 O N N 125 GNG N2 N N N 126 GNG "C2'" C N N 127 GNG "C3'" C N S 128 GNG "O3'" O N N 129 GNG "H5'" H N N 130 GNG "H5'1" H N N 131 GNG "H5'2" H N N 132 GNG "H4'" H N N 133 GNG "H1'" H N N 134 GNG H8 H N N 135 GNG HN3 H N N 136 GNG HN21 H N N 137 GNG HN22 H N N 138 GNG "H2'1" H N N 139 GNG "H2'2" H N N 140 GNG "H3'" H N N 141 GNG H1 H N N 142 GTP PG P N N 143 GTP O1G O N N 144 GTP O2G O N N 145 GTP O3G O N N 146 GTP O3B O N N 147 GTP PB P N N 148 GTP O1B O N N 149 GTP O2B O N N 150 GTP O3A O N N 151 GTP PA P N N 152 GTP O1A O N N 153 GTP O2A O N N 154 GTP "O5'" O N N 155 GTP "C5'" C N N 156 GTP "C4'" C N R 157 GTP "O4'" O N N 158 GTP "C3'" C N S 159 GTP "O3'" O N N 160 GTP "C2'" C N R 161 GTP "O2'" O N N 162 GTP "C1'" C N R 163 GTP N9 N Y N 164 GTP C8 C Y N 165 GTP N7 N Y N 166 GTP C5 C Y N 167 GTP C6 C N N 168 GTP O6 O N N 169 GTP N1 N N N 170 GTP C2 C N N 171 GTP N2 N N N 172 GTP N3 N N N 173 GTP C4 C Y N 174 GTP HOG2 H N N 175 GTP HOG3 H N N 176 GTP HOB2 H N N 177 GTP HOA2 H N N 178 GTP "H5'" H N N 179 GTP "H5''" H N N 180 GTP "H4'" H N N 181 GTP "H3'" H N N 182 GTP "HO3'" H N N 183 GTP "H2'" H N N 184 GTP "HO2'" H N N 185 GTP "H1'" H N N 186 GTP H8 H N N 187 GTP HN1 H N N 188 GTP HN21 H N N 189 GTP HN22 H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 MG MG MG N N 194 NA NA NA N N 195 U OP3 O N N 196 U P P N N 197 U OP1 O N N 198 U OP2 O N N 199 U "O5'" O N N 200 U "C5'" C N N 201 U "C4'" C N R 202 U "O4'" O N N 203 U "C3'" C N S 204 U "O3'" O N N 205 U "C2'" C N R 206 U "O2'" O N N 207 U "C1'" C N R 208 U N1 N N N 209 U C2 C N N 210 U O2 O N N 211 U N3 N N N 212 U C4 C N N 213 U O4 O N N 214 U C5 C N N 215 U C6 C N N 216 U HOP3 H N N 217 U HOP2 H N N 218 U "H5'" H N N 219 U "H5''" H N N 220 U "H4'" H N N 221 U "H3'" H N N 222 U "HO3'" H N N 223 U "H2'" H N N 224 U "HO2'" H N N 225 U "H1'" H N N 226 U H3 H N N 227 U H5 H N N 228 U H6 H N N 229 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GNG "O5'" "C5'" sing N N 116 GNG "O5'" "H5'" sing N N 117 GNG "C5'" "C4'" sing N N 118 GNG "C5'" "H5'1" sing N N 119 GNG "C5'" "H5'2" sing N N 120 GNG "C4'" "O4'" sing N N 121 GNG "C4'" "C3'" sing N N 122 GNG "C4'" "H4'" sing N N 123 GNG "O4'" "C1'" sing N N 124 GNG "C1'" N9 sing N N 125 GNG "C1'" "C2'" sing N N 126 GNG "C1'" "H1'" sing N N 127 GNG N9 C8 sing Y N 128 GNG N9 C4 sing Y N 129 GNG C8 N7 doub Y N 130 GNG C8 H8 sing N N 131 GNG N7 C5 sing Y N 132 GNG C5 C4 doub Y N 133 GNG C5 C6 sing N N 134 GNG C4 N3 sing N N 135 GNG N3 C2 sing N N 136 GNG N3 HN3 sing N N 137 GNG C2 N1 doub N N 138 GNG C2 N2 sing N N 139 GNG N1 C6 sing N N 140 GNG C6 O6 doub N N 141 GNG N2 HN21 sing N N 142 GNG N2 HN22 sing N N 143 GNG "C2'" "C3'" sing N N 144 GNG "C2'" "H2'1" sing N N 145 GNG "C2'" "H2'2" sing N N 146 GNG "C3'" "O3'" sing N N 147 GNG "C3'" "H3'" sing N N 148 GNG "O3'" H1 sing N N 149 GTP PG O1G doub N N 150 GTP PG O2G sing N N 151 GTP PG O3G sing N N 152 GTP PG O3B sing N N 153 GTP O2G HOG2 sing N N 154 GTP O3G HOG3 sing N N 155 GTP O3B PB sing N N 156 GTP PB O1B doub N N 157 GTP PB O2B sing N N 158 GTP PB O3A sing N N 159 GTP O2B HOB2 sing N N 160 GTP O3A PA sing N N 161 GTP PA O1A doub N N 162 GTP PA O2A sing N N 163 GTP PA "O5'" sing N N 164 GTP O2A HOA2 sing N N 165 GTP "O5'" "C5'" sing N N 166 GTP "C5'" "C4'" sing N N 167 GTP "C5'" "H5'" sing N N 168 GTP "C5'" "H5''" sing N N 169 GTP "C4'" "O4'" sing N N 170 GTP "C4'" "C3'" sing N N 171 GTP "C4'" "H4'" sing N N 172 GTP "O4'" "C1'" sing N N 173 GTP "C3'" "O3'" sing N N 174 GTP "C3'" "C2'" sing N N 175 GTP "C3'" "H3'" sing N N 176 GTP "O3'" "HO3'" sing N N 177 GTP "C2'" "O2'" sing N N 178 GTP "C2'" "C1'" sing N N 179 GTP "C2'" "H2'" sing N N 180 GTP "O2'" "HO2'" sing N N 181 GTP "C1'" N9 sing N N 182 GTP "C1'" "H1'" sing N N 183 GTP N9 C8 sing Y N 184 GTP N9 C4 sing Y N 185 GTP C8 N7 doub Y N 186 GTP C8 H8 sing N N 187 GTP N7 C5 sing Y N 188 GTP C5 C6 sing N N 189 GTP C5 C4 doub Y N 190 GTP C6 O6 doub N N 191 GTP C6 N1 sing N N 192 GTP N1 C2 sing N N 193 GTP N1 HN1 sing N N 194 GTP C2 N2 sing N N 195 GTP C2 N3 doub N N 196 GTP N2 HN21 sing N N 197 GTP N2 HN22 sing N N 198 GTP N3 C4 sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 U OP3 P sing N N 202 U OP3 HOP3 sing N N 203 U P OP1 doub N N 204 U P OP2 sing N N 205 U P "O5'" sing N N 206 U OP2 HOP2 sing N N 207 U "O5'" "C5'" sing N N 208 U "C5'" "C4'" sing N N 209 U "C5'" "H5'" sing N N 210 U "C5'" "H5''" sing N N 211 U "C4'" "O4'" sing N N 212 U "C4'" "C3'" sing N N 213 U "C4'" "H4'" sing N N 214 U "O4'" "C1'" sing N N 215 U "C3'" "O3'" sing N N 216 U "C3'" "C2'" sing N N 217 U "C3'" "H3'" sing N N 218 U "O3'" "HO3'" sing N N 219 U "C2'" "O2'" sing N N 220 U "C2'" "C1'" sing N N 221 U "C2'" "H2'" sing N N 222 U "O2'" "HO2'" sing N N 223 U "C1'" N1 sing N N 224 U "C1'" "H1'" sing N N 225 U N1 C2 sing N N 226 U N1 C6 sing N N 227 U C2 O2 doub N N 228 U C2 N3 sing N N 229 U N3 C4 sing N N 230 U N3 H3 sing N N 231 U C4 O4 doub N N 232 U C4 C5 sing N N 233 U C5 C6 doub N N 234 U C5 H5 sing N N 235 U C6 H6 sing N N 236 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8KEB 'double helix' 8KEB 'a-form double helix' 8KEB 'mismatched base pair' 8KEB 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 70 1_555 -1.823 -0.434 0.508 6.605 -9.971 3.156 1 A_G2:U70_A A 2 ? A 70 ? 28 1 1 A A 3 1_555 A U 69 1_555 0.039 -0.059 0.382 5.534 -9.779 6.073 2 A_A3:U69_A A 3 ? A 69 ? 20 1 1 A U 4 1_555 A A 68 1_555 -0.184 -0.127 0.286 -3.167 -8.318 -0.863 3 A_U4:A68_A A 4 ? A 68 ? 20 1 1 A U 5 1_555 A A 67 1_555 -0.139 -0.065 0.247 -2.972 -8.380 2.328 4 A_U5:A67_A A 5 ? A 67 ? 20 1 1 A C 6 1_555 A G 66 1_555 0.148 -0.153 0.069 -1.074 -7.241 2.497 5 A_C6:G66_A A 6 ? A 66 ? 19 1 1 A G 7 1_555 A C 65 1_555 -0.121 -0.128 0.211 -8.901 -17.556 0.106 6 A_G7:C65_A A 7 ? A 65 ? 19 1 1 A U 8 1_555 A G 64 1_555 1.898 -0.498 0.380 -12.006 -15.422 -2.073 7 A_U8:G64_A A 8 ? A 64 ? 28 1 1 A A 9 1_555 A U 63 1_555 0.116 -0.227 0.484 -2.212 -4.923 -2.391 8 A_A9:U63_A A 9 ? A 63 ? 20 1 1 A U 27 1_555 A U 19 1_555 -2.765 -1.974 0.191 -4.056 -18.581 15.440 9 A_U27:U19_A A 27 ? A 19 ? 16 1 1 A U 28 1_555 A A 18 1_555 -0.042 -0.152 0.093 -5.396 -11.298 7.078 10 A_U28:A18_A A 28 ? A 18 ? 20 1 1 A U 29 1_555 A A 17 1_555 -0.049 -0.122 0.221 -3.775 -0.428 5.217 11 A_U29:A17_A A 29 ? A 17 ? 20 1 1 A A 30 1_555 A U 16 1_555 0.170 -0.038 0.522 4.684 -1.768 -1.410 12 A_A30:U16_A A 30 ? A 16 ? 20 1 1 A A 31 1_555 A U 15 1_555 0.146 -0.002 0.251 3.925 -5.796 4.580 13 A_A31:U15_A A 31 ? A 15 ? 20 1 1 A G 32 1_555 A C 14 1_555 -0.158 -0.013 0.000 -0.501 -4.105 0.974 14 A_G32:C14_A A 32 ? A 14 ? 19 1 1 A G 33 1_555 A C 13 1_555 -0.132 -0.134 -0.033 -8.550 -7.372 2.443 15 A_G33:C13_A A 33 ? A 13 ? 19 1 1 A G 34 1_555 A C 40 1_555 -0.196 -0.186 0.501 2.629 8.745 0.535 16 A_G34:C40_A A 34 ? A 40 ? 19 1 1 A U 10 1_555 A A 39 1_555 0.068 0.015 -0.008 17.898 -6.734 4.643 17 A_U10:A39_A A 10 ? A 39 ? 20 1 1 A U 12 1_555 A A 41 1_555 -0.492 3.585 -0.272 -1.066 11.475 -64.601 18 A_U12:A41_A A 12 ? A 41 ? 23 3 1 A U 60 1_555 A U 42 1_555 2.466 -1.863 0.112 12.386 -4.208 14.608 19 A_U60:U42_A A 60 ? A 42 ? 16 1 1 A U 59 1_555 A A 43 1_555 0.034 -0.082 0.010 3.523 -2.077 5.548 20 A_U59:A43_A A 59 ? A 43 ? 20 1 1 A C 58 1_555 A G 44 1_555 0.247 -0.072 0.039 -0.528 -5.818 1.209 21 A_C58:G44_A A 58 ? A 44 ? 19 1 1 A U 57 1_555 A A 45 1_555 -0.069 -0.002 0.105 -0.551 0.839 6.682 22 A_U57:A45_A A 57 ? A 45 ? 20 1 1 A U 56 1_555 A G 46 1_555 1.711 -0.335 0.102 -3.491 -4.286 4.317 23 A_U56:G46_A A 56 ? A 46 ? 28 1 1 A U 55 1_555 A A 47 1_555 -0.179 -0.055 -0.047 3.217 -4.140 2.225 24 A_U55:A47_A A 55 ? A 47 ? 20 1 1 A G 26 1_555 A C 48 1_555 -0.022 -0.096 0.531 16.117 -3.685 -0.340 25 A_G26:C48_A A 26 ? A 48 ? 19 1 1 A G 25 1_555 A C 49 1_555 -0.108 -0.177 0.886 7.092 -5.376 -3.367 26 A_G25:C49_A A 25 ? A 49 ? 19 1 1 A A 52 1_555 A A 23 1_555 4.086 1.314 0.096 10.834 5.328 -107.701 27 A_A52:A23_A A 52 ? A 23 ? 5 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 70 1_555 A A 3 1_555 A U 69 1_555 -0.110 -1.015 3.185 -2.503 5.348 41.523 -1.951 -0.096 3.039 7.497 3.509 41.922 1 AA_G2A3:U69U70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A A 3 1_555 A U 69 1_555 A U 4 1_555 A A 68 1_555 -0.714 -1.574 3.287 -2.125 7.224 31.507 -4.047 0.921 2.905 13.071 3.845 32.372 2 AA_A3U4:A68U69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A U 4 1_555 A A 68 1_555 A U 5 1_555 A A 67 1_555 0.112 -1.219 3.157 0.652 4.345 32.553 -2.857 -0.093 2.976 7.707 -1.157 32.840 3 AA_U4U5:A67A68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A U 5 1_555 A A 67 1_555 A C 6 1_555 A G 66 1_555 0.298 -1.231 3.147 -0.032 3.518 34.872 -2.542 -0.499 3.012 5.852 0.053 35.044 4 AA_U5C6:G66A67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A C 6 1_555 A G 66 1_555 A G 7 1_555 A C 65 1_555 0.168 -1.728 3.191 -0.014 12.238 32.027 -4.641 -0.288 2.390 21.236 0.025 34.228 5 AA_C6G7:C65G66_AA A 6 ? A 66 ? A 7 ? A 65 ? 1 A G 7 1_555 A C 65 1_555 A U 8 1_555 A G 64 1_555 -0.102 -1.241 3.278 1.539 6.853 40.487 -2.493 0.309 3.032 9.813 -2.203 41.067 6 AA_G7U8:G64C65_AA A 7 ? A 65 ? A 8 ? A 64 ? 1 A U 8 1_555 A G 64 1_555 A A 9 1_555 A U 63 1_555 -0.065 -1.292 2.689 2.323 12.591 26.476 -4.544 0.495 1.881 25.670 -4.736 29.360 7 AA_U8A9:U63G64_AA A 8 ? A 64 ? A 9 ? A 63 ? 1 A U 27 1_555 A U 19 1_555 A U 28 1_555 A A 18 1_555 -0.436 -1.039 3.370 -0.324 2.421 45.587 -1.556 0.533 3.317 3.122 0.418 45.649 8 AA_U27U28:A18U19_AA A 27 ? A 19 ? A 28 ? A 18 ? 1 A U 28 1_555 A A 18 1_555 A U 29 1_555 A A 17 1_555 -0.449 -1.996 3.084 -0.836 8.579 27.160 -5.735 0.750 2.368 17.711 1.726 28.471 9 AA_U28U29:A17A18_AA A 28 ? A 18 ? A 29 ? A 17 ? 1 A U 29 1_555 A A 17 1_555 A A 30 1_555 A U 16 1_555 -0.370 -1.735 2.930 -2.646 3.077 33.634 -3.413 0.261 2.785 5.293 4.553 33.871 10 AA_U29A30:U16A17_AA A 29 ? A 17 ? A 30 ? A 16 ? 1 A A 30 1_555 A U 16 1_555 A A 31 1_555 A U 15 1_555 -0.185 -1.587 3.263 0.854 5.522 29.423 -4.161 0.527 2.917 10.750 -1.663 29.938 11 AA_A30A31:U15U16_AA A 30 ? A 16 ? A 31 ? A 15 ? 1 A A 31 1_555 A U 15 1_555 A G 32 1_555 A C 14 1_555 0.117 -1.830 3.252 1.594 5.926 28.018 -4.951 0.101 2.815 12.057 -3.243 28.669 12 AA_A31G32:C14U15_AA A 31 ? A 15 ? A 32 ? A 14 ? 1 A G 32 1_555 A C 14 1_555 A G 33 1_555 A C 13 1_555 0.466 -2.180 3.316 1.846 7.599 34.062 -4.721 -0.513 2.800 12.764 -3.100 34.923 13 AA_G32G33:C13C14_AA A 32 ? A 14 ? A 33 ? A 13 ? 1 A G 33 1_555 A C 13 1_555 A G 34 1_555 A C 40 1_555 2.653 -0.947 2.754 1.248 -5.424 50.714 -0.774 -3.006 2.894 -6.311 -1.452 50.999 14 AA_G33G34:C40C13_AA A 33 ? A 13 ? A 34 ? A 40 ? 1 A G 34 1_555 A C 40 1_555 A U 10 1_555 A A 39 1_555 -1.971 -0.554 3.044 4.308 6.586 48.427 -1.113 2.667 2.776 7.968 -5.211 49.024 15 AA_G34U10:A39C40_AA A 34 ? A 40 ? A 10 ? A 39 ? 1 A U 12 1_555 A A 41 1_555 A U 60 1_555 A U 42 1_555 3.291 -1.749 -2.491 -130.358 -112.559 141.510 -1.167 -1.308 -2.796 -56.421 65.343 177.440 16 AA_U12U60:U42A41_AA A 12 ? A 41 ? A 60 ? A 42 ? 1 A U 60 1_555 A U 42 1_555 A U 59 1_555 A A 43 1_555 -0.369 1.506 -3.020 1.433 -5.615 -34.766 -3.228 -0.798 -2.734 9.316 2.377 -35.231 17 AA_U60U59:A43U42_AA A 60 ? A 42 ? A 59 ? A 43 ? 1 A U 59 1_555 A A 43 1_555 A C 58 1_555 A G 44 1_555 -0.267 1.910 -3.146 1.945 -5.428 -29.243 -4.743 -0.888 -2.732 10.621 3.805 -29.794 18 AA_U59C58:G44A43_AA A 59 ? A 43 ? A 58 ? A 44 ? 1 A C 58 1_555 A G 44 1_555 A U 57 1_555 A A 45 1_555 0.086 1.856 -3.221 -0.872 -6.956 -29.422 -4.857 0.327 -2.717 13.455 -1.686 -30.228 19 AA_C58U57:A45G44_AA A 58 ? A 44 ? A 57 ? A 45 ? 1 A U 57 1_555 A A 45 1_555 A U 56 1_555 A G 46 1_555 0.965 2.724 -3.039 0.728 -6.518 -20.890 -9.227 2.314 -2.132 17.431 1.947 -21.885 20 AA_U57U56:G46A45_AA A 57 ? A 45 ? A 56 ? A 46 ? 1 A U 56 1_555 A G 46 1_555 A U 55 1_555 A A 47 1_555 -0.170 1.939 -3.385 -1.044 -3.616 -38.264 -3.398 -0.127 -3.199 5.500 -1.588 -38.442 21 AA_U56U55:A47G46_AA A 56 ? A 46 ? A 55 ? A 47 ? 1 A U 55 1_555 A A 47 1_555 A G 26 1_555 A C 48 1_555 1.935 0.962 -3.183 3.686 -5.920 -55.031 -1.372 1.869 -3.185 6.378 3.971 -55.437 22 AA_U55G26:C48A47_AA A 55 ? A 47 ? A 26 ? A 48 ? 1 A G 26 1_555 A C 48 1_555 A G 25 1_555 A C 49 1_555 -0.683 1.123 -3.104 -3.517 -7.440 -26.155 -4.058 -0.645 -2.752 15.945 -7.537 -27.398 23 AA_G26G25:C49C48_AA A 26 ? A 48 ? A 25 ? A 49 ? 1 A G 25 1_555 A C 49 1_555 A A 52 1_555 A A 23 1_555 -3.659 0.457 -3.695 0.822 0.127 133.798 0.250 1.983 -3.706 0.069 -0.447 133.800 24 AA_G25A52:A23C49_AA A 25 ? A 49 ? A 52 ? A 23 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list 4FE5 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FE5 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8KEB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.007168 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037266 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016620 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_