HEADER OXYGEN STORAGE 15-AUG-23 8KFI TITLE CRYSTAL STRUCTURE OF SPERM WHALE MYOGLOBIN (F43A/H64I MUTANT) TITLE 2 RECONSTITUTED WITH MANGANESE PORPHYCENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSETER CATODON; SOURCE 3 ORGANISM_COMMON: SPERM WHALE; SOURCE 4 ORGANISM_TAXID: 9755; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLOBIN FOLD, OXYGEN TRANSPORT, MUSCLES, OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR E.MIZOHATA,K.OOHORA,T.HAYASHI REVDAT 1 21-AUG-24 8KFI 0 JRNL AUTH K.OOHORA,Y.KAGAWA,T.NISHIURA,E.MIZOHATA,U.SCHWANEBERG, JRNL AUTH 2 T.HAYASHI JRNL TITL RATIONAL DESIGN OF AN ARTIFICIAL ETHYLBENZENE HYDROXYLASE JRNL TITL 2 USING MOLECULAR DYNAMICS SIMULATION TO ENHANCE THE JRNL TITL 3 ENANTIOSELECTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : 2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2754 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3740 ; 4.170 ; 1.683 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;37.320 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;22.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2016 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 3.237 ; 4.363 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1593 ; 5.218 ; 6.527 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 5.042 ; 5.171 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11878 ;12.062 ;82.061 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -5 153 B -5 153 5129 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3380 -15.3603 26.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.0134 REMARK 3 T33: 0.2339 T12: -0.0039 REMARK 3 T13: -0.0149 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.0609 L22: 1.5536 REMARK 3 L33: 1.6099 L12: 0.0479 REMARK 3 L13: 0.1480 L23: -0.6581 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0555 S13: 0.1066 REMARK 3 S21: 0.1495 S22: -0.0843 S23: 0.0926 REMARK 3 S31: -0.0195 S32: -0.0145 S33: 0.0337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8578 -6.1147 9.6306 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.0199 REMARK 3 T33: 0.2482 T12: 0.0066 REMARK 3 T13: -0.0077 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.0308 L22: 1.0299 REMARK 3 L33: 0.7581 L12: -0.1261 REMARK 3 L13: -0.3859 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.0675 S13: 0.0009 REMARK 3 S21: -0.1690 S22: -0.0544 S23: -0.1612 REMARK 3 S31: -0.0248 S32: 0.1135 S33: 0.0522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8KFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.64400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 100 MM TRIS REMARK 280 -HCL BUFFER AT PH 8.2, 4% ACETONE AND 10% TREHALOSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.34600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.33350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.33350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.34600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 TRP A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 PRO A -12 REMARK 465 GLN A -11 REMARK 465 PHE A -10 REMARK 465 GLU A -9 REMARK 465 LYS A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 MET B -16 REMARK 465 TRP B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 PRO B -12 REMARK 465 GLN B -11 REMARK 465 PHE B -10 REMARK 465 GLU B -9 REMARK 465 LYS B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 326 O HOH A 332 1.89 REMARK 500 OE2 GLU B 18 NZ LYS B 77 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 45 CZ ARG B 45 NH2 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 1 -68.10 69.87 REMARK 500 HIS A 48 31.55 -81.65 REMARK 500 LYS A 50 -35.12 -132.41 REMARK 500 THR A 95 -76.80 -106.91 REMARK 500 GLU A 148 -0.45 -49.95 REMARK 500 LEU A 149 15.91 -140.42 REMARK 500 GLN A 152 -14.31 -48.29 REMARK 500 VAL B 1 -65.24 72.51 REMARK 500 LYS B 50 -30.49 -132.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 352 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 361 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 362 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HNN A 201 NB 91.2 REMARK 620 3 HNN A 201 NC 109.5 84.9 REMARK 620 4 HNN A 201 NA 96.5 89.1 153.4 REMARK 620 5 HNN A 201 ND 105.2 163.5 91.5 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HNN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HNN B 201 NB 90.8 REMARK 620 3 HNN B 201 NC 107.7 84.0 REMARK 620 4 HNN B 201 NA 93.6 90.9 158.1 REMARK 620 5 HNN B 201 ND 107.3 161.6 93.7 84.5 REMARK 620 N 1 2 3 4 DBREF 8KFI A 1 153 UNP P02185 MYG_PHYMC 2 154 DBREF 8KFI B 1 153 UNP P02185 MYG_PHYMC 2 154 SEQADV 8KFI MET A -16 UNP P02185 INITIATING METHIONINE SEQADV 8KFI TRP A -15 UNP P02185 EXPRESSION TAG SEQADV 8KFI SER A -14 UNP P02185 EXPRESSION TAG SEQADV 8KFI HIS A -13 UNP P02185 EXPRESSION TAG SEQADV 8KFI PRO A -12 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLN A -11 UNP P02185 EXPRESSION TAG SEQADV 8KFI PHE A -10 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLU A -9 UNP P02185 EXPRESSION TAG SEQADV 8KFI LYS A -8 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLU A -7 UNP P02185 EXPRESSION TAG SEQADV 8KFI ASN A -6 UNP P02185 EXPRESSION TAG SEQADV 8KFI LEU A -5 UNP P02185 EXPRESSION TAG SEQADV 8KFI TYR A -4 UNP P02185 EXPRESSION TAG SEQADV 8KFI PHE A -3 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLN A -2 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLY A -1 UNP P02185 EXPRESSION TAG SEQADV 8KFI LYS A 0 UNP P02185 EXPRESSION TAG SEQADV 8KFI ALA A 43 UNP P02185 PHE 44 ENGINEERED MUTATION SEQADV 8KFI ILE A 64 UNP P02185 HIS 65 ENGINEERED MUTATION SEQADV 8KFI ASN A 122 UNP P02185 ASP 123 ENGINEERED MUTATION SEQADV 8KFI MET B -16 UNP P02185 INITIATING METHIONINE SEQADV 8KFI TRP B -15 UNP P02185 EXPRESSION TAG SEQADV 8KFI SER B -14 UNP P02185 EXPRESSION TAG SEQADV 8KFI HIS B -13 UNP P02185 EXPRESSION TAG SEQADV 8KFI PRO B -12 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLN B -11 UNP P02185 EXPRESSION TAG SEQADV 8KFI PHE B -10 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLU B -9 UNP P02185 EXPRESSION TAG SEQADV 8KFI LYS B -8 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLU B -7 UNP P02185 EXPRESSION TAG SEQADV 8KFI ASN B -6 UNP P02185 EXPRESSION TAG SEQADV 8KFI LEU B -5 UNP P02185 EXPRESSION TAG SEQADV 8KFI TYR B -4 UNP P02185 EXPRESSION TAG SEQADV 8KFI PHE B -3 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLN B -2 UNP P02185 EXPRESSION TAG SEQADV 8KFI GLY B -1 UNP P02185 EXPRESSION TAG SEQADV 8KFI LYS B 0 UNP P02185 EXPRESSION TAG SEQADV 8KFI ALA B 43 UNP P02185 PHE 44 ENGINEERED MUTATION SEQADV 8KFI ILE B 64 UNP P02185 HIS 65 ENGINEERED MUTATION SEQADV 8KFI ASN B 122 UNP P02185 ASP 123 ENGINEERED MUTATION SEQRES 1 A 170 MET TRP SER HIS PRO GLN PHE GLU LYS GLU ASN LEU TYR SEQRES 2 A 170 PHE GLN GLY LYS VAL LEU SER GLU GLY GLU TRP GLN LEU SEQRES 3 A 170 VAL LEU HIS VAL TRP ALA LYS VAL GLU ALA ASP VAL ALA SEQRES 4 A 170 GLY HIS GLY GLN ASP ILE LEU ILE ARG LEU PHE LYS SER SEQRES 5 A 170 HIS PRO GLU THR LEU GLU LYS ALA ASP ARG PHE LYS HIS SEQRES 6 A 170 LEU LYS THR GLU ALA GLU MET LYS ALA SER GLU ASP LEU SEQRES 7 A 170 LYS LYS ILE GLY VAL THR VAL LEU THR ALA LEU GLY ALA SEQRES 8 A 170 ILE LEU LYS LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS SEQRES 9 A 170 PRO LEU ALA GLN SER HIS ALA THR LYS HIS LYS ILE PRO SEQRES 10 A 170 ILE LYS TYR LEU GLU PHE ILE SER GLU ALA ILE ILE HIS SEQRES 11 A 170 VAL LEU HIS SER ARG HIS PRO GLY ASN PHE GLY ALA ASP SEQRES 12 A 170 ALA GLN GLY ALA MET ASN LYS ALA LEU GLU LEU PHE ARG SEQRES 13 A 170 LYS ASP ILE ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN SEQRES 14 A 170 GLY SEQRES 1 B 170 MET TRP SER HIS PRO GLN PHE GLU LYS GLU ASN LEU TYR SEQRES 2 B 170 PHE GLN GLY LYS VAL LEU SER GLU GLY GLU TRP GLN LEU SEQRES 3 B 170 VAL LEU HIS VAL TRP ALA LYS VAL GLU ALA ASP VAL ALA SEQRES 4 B 170 GLY HIS GLY GLN ASP ILE LEU ILE ARG LEU PHE LYS SER SEQRES 5 B 170 HIS PRO GLU THR LEU GLU LYS ALA ASP ARG PHE LYS HIS SEQRES 6 B 170 LEU LYS THR GLU ALA GLU MET LYS ALA SER GLU ASP LEU SEQRES 7 B 170 LYS LYS ILE GLY VAL THR VAL LEU THR ALA LEU GLY ALA SEQRES 8 B 170 ILE LEU LYS LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS SEQRES 9 B 170 PRO LEU ALA GLN SER HIS ALA THR LYS HIS LYS ILE PRO SEQRES 10 B 170 ILE LYS TYR LEU GLU PHE ILE SER GLU ALA ILE ILE HIS SEQRES 11 B 170 VAL LEU HIS SER ARG HIS PRO GLY ASN PHE GLY ALA ASP SEQRES 12 B 170 ALA GLN GLY ALA MET ASN LYS ALA LEU GLU LEU PHE ARG SEQRES 13 B 170 LYS ASP ILE ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN SEQRES 14 B 170 GLY HET HNN A 201 43 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET HNN B 201 43 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HET SO4 B 207 5 HETNAM HNN PORPHYCENE CONTAINING MN HETNAM SO4 SULFATE ION FORMUL 3 HNN 2(C34 H36 MN N4 O4 2+) FORMUL 4 SO4 12(O4 S 2-) FORMUL 17 HOH *114(H2 O) HELIX 1 AA1 SER A 3 ALA A 19 1 17 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 PRO A 37 LYS A 42 1 6 HELIX 4 AA4 ALA A 43 LYS A 47 5 5 HELIX 5 AA5 THR A 51 SER A 58 1 8 HELIX 6 AA6 SER A 58 LYS A 78 1 21 HELIX 7 AA7 HIS A 82 THR A 95 1 14 HELIX 8 AA8 PRO A 100 HIS A 119 1 20 HELIX 9 AA9 GLY A 124 GLU A 148 1 25 HELIX 10 AB1 SER B 3 ASP B 20 1 18 HELIX 11 AB2 ASP B 20 HIS B 36 1 17 HELIX 12 AB3 PRO B 37 LYS B 42 1 6 HELIX 13 AB4 THR B 51 SER B 58 1 8 HELIX 14 AB5 SER B 58 LYS B 78 1 21 HELIX 15 AB6 HIS B 82 LYS B 96 1 15 HELIX 16 AB7 PRO B 100 HIS B 119 1 20 HELIX 17 AB8 GLY B 124 LEU B 149 1 26 LINK NE2 HIS A 93 MN HNN A 201 1555 1555 2.15 LINK NE2 HIS B 93 MN HNN B 201 1555 1555 2.29 CRYST1 56.692 79.160 104.667 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009554 0.00000