HEADER VIRAL PROTEIN/IMMUNE SYSTEM 22-AUG-23 8KHR TITLE CRYO-EM STRUCTURE OF EBV GH/GL-GP42 IN COMPLEX WITH FAB 2C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE GP42; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 2C1 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 2C1 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: ENVELOPE GLYCOPROTEIN H; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: GH; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: ENVELOPE GLYCOPROTEIN L; COMPND 20 CHAIN: B; COMPND 21 SYNONYM: GL; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN GD1); SOURCE 3 ORGANISM_COMMON: HHV-4, HUMAN HERPESVIRUS 4; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 GENE: BZLF2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN GD1); SOURCE 25 ORGANISM_COMMON: HHV-4, HUMAN HERPESVIRUS 4; SOURCE 26 ORGANISM_TAXID: 10376; SOURCE 27 GENE: BXLF2, GH; SOURCE 28 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 29 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 31 MOL_ID: 5; SOURCE 32 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN GD1); SOURCE 33 ORGANISM_COMMON: HHV-4, HUMAN HERPESVIRUS 4; SOURCE 34 ORGANISM_TAXID: 10376; SOURCE 35 GENE: BKRF2, GL; SOURCE 36 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 37 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HUMAN GAMMAHERPESVIRUS 4, NEUTRALIZING ANTIBODY, VIRAL PROTEIN/IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR X.Y.FANG,G.X.ZHAO,M.S.ZENG,Z.LIU REVDAT 1 19-JUN-24 8KHR 0 JRNL AUTH G.X.ZHAO,X.Y.FANG,G.L.BU,S.J.CHEN,C.SUN,T.LI,C.XIE,Y.WANG, JRNL AUTH 2 S.X.LI,N.MENG,G.K.FENG,Q.ZHONG,X.W.KONG,Z.LIU,M.S.ZENG JRNL TITL POTENT HUMAN MONOCLONAL ANTIBODIES TARGETING EPSTEIN-BARR JRNL TITL 2 VIRUS GP42 REVEAL VULNERABLE SITES FOR VIRUS INFECTION. JRNL REF CELL REP MED V. 5 01573 2024 JRNL REFN ESSN 2666-3791 JRNL PMID 38776874 JRNL DOI 10.1016/J.XCRM.2024.101573 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.250 REMARK 3 NUMBER OF PARTICLES : 227428 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8KHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040352. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PENTAMER COMPLEX OF GH/GL-GP42 REMARK 245 WITH FAB 2C1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 34 REMARK 465 GLY C 35 REMARK 465 ARG C 36 REMARK 465 VAL C 37 REMARK 465 ALA C 38 REMARK 465 ALA C 39 REMARK 465 ALA C 40 REMARK 465 ALA C 41 REMARK 465 ILE C 42 REMARK 465 CYS C 216 REMARK 465 VAL C 217 REMARK 465 SER C 218 REMARK 465 GLN C 219 REMARK 465 ARG C 220 REMARK 465 SER C 221 REMARK 465 ASN C 222 REMARK 465 SER C 223 REMARK 465 HIS C 224 REMARK 465 HIS C 225 REMARK 465 HIS C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 ILE A 29 REMARK 465 GLU A 30 REMARK 465 GLY A 31 REMARK 465 HIS A 32 REMARK 465 ALA A 33 REMARK 465 LEU B 34 REMARK 465 ARG B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 HIS B 38 REMARK 465 LEU B 39 REMARK 465 LYS B 68 REMARK 465 ASN B 69 REMARK 465 GLY B 70 REMARK 465 SER B 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 66 OG1 CG2 REMARK 470 GLU C 68 CG CD OE1 OE2 REMARK 470 GLN C 69 CG CD OE1 NE2 REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 ASP C 73 CG OD1 OD2 REMARK 470 THR C 87 OG1 CG2 REMARK 470 GLN C 89 CG CD OE1 NE2 REMARK 470 CYS C 99 SG REMARK 470 PHE C 109 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS C 115 SG REMARK 470 PHE C 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR C 117 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR C 119 OG1 CG2 REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 HIS C 123 CG ND1 CD2 CE1 NE2 REMARK 470 THR C 124 OG1 CG2 REMARK 470 CYS C 128 SG REMARK 470 PHE C 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 130 CG CD OE1 NE2 REMARK 470 CYS C 132 SG REMARK 470 GLU C 134 CG CD OE1 OE2 REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 TYR C 136 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO C 137 CG CD REMARK 470 CYS C 138 SG REMARK 470 THR C 145 OG1 CG2 REMARK 470 PRO C 150 CG CD REMARK 470 THR C 153 OG1 CG2 REMARK 470 TRP C 163 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 163 CZ3 CH2 REMARK 470 VAL C 164 CG1 CG2 REMARK 470 ARG C 168 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 169 CG1 CG2 REMARK 470 GLU C 171 CG CD OE1 OE2 REMARK 470 THR C 175 OG1 CG2 REMARK 470 THR C 181 OG1 CG2 REMARK 470 PHE C 182 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 184 CG1 CG2 REMARK 470 GLN C 186 CG CD OE1 NE2 REMARK 470 SER C 190 OG REMARK 470 CYS C 192 SG REMARK 470 CYS C 214 SG REMARK 470 LYS H 12 CG CD CE NZ REMARK 470 ARG H 23 CG CD NE CZ NH1 NH2 REMARK 470 THR H 31 OG1 CG2 REMARK 470 ILE H 34 CG1 CG2 CD1 REMARK 470 SER H 35 OG REMARK 470 MET H 48 CG SD CE REMARK 470 VAL H 54 CG1 CG2 REMARK 470 SER H 55 OG REMARK 470 THR H 57 OG1 CG2 REMARK 470 ASN H 59 CG OD1 ND2 REMARK 470 TYR H 60 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN H 62 CG CD OE1 NE2 REMARK 470 VAL H 68 CG1 CG2 REMARK 470 ILE H 70 CG1 CG2 CD1 REMARK 470 ASP H 73 CG OD1 OD2 REMARK 470 GLU H 74 CG CD OE1 OE2 REMARK 470 SER H 75 OG REMARK 470 THR H 76 OG1 CG2 REMARK 470 THR H 78 OG1 CG2 REMARK 470 TYR H 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP H 82 CG OD1 OD2 REMARK 470 LEU H 83 CG CD1 CD2 REMARK 470 SER H 84 OG REMARK 470 SER H 85 OG REMARK 470 LEU H 86 CG CD1 CD2 REMARK 470 ARG H 87 CG CD NE CZ NH1 NH2 REMARK 470 SER H 88 OG REMARK 470 GLU H 89 CG CD OE1 OE2 REMARK 470 ASP H 90 CG OD1 OD2 REMARK 470 THR H 91 OG1 CG2 REMARK 470 TYR H 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG H 98 CG CD NE CZ NH1 NH2 REMARK 470 PRO H 100 CG CD REMARK 470 ASN H 105 CG OD1 ND2 REMARK 470 PRO H 107 CG CD REMARK 470 PHE H 108 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP H 109 CG OD1 OD2 REMARK 470 TYR H 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP H 111 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP H 111 CZ3 CH2 REMARK 470 GLN H 113 CG CD OE1 NE2 REMARK 470 LEU L 4 CG CD1 CD2 REMARK 470 SER L 7 OG REMARK 470 PRO L 8 CG CD REMARK 470 SER L 9 OG REMARK 470 SER L 10 OG REMARK 470 LEU L 11 CG CD1 CD2 REMARK 470 ARG L 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 TYR L 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR L 36 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS L 39 CG CD CE NZ REMARK 470 ASN L 45 CG OD1 ND2 REMARK 470 ILE L 48 CG1 CG2 CD1 REMARK 470 TYR L 49 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE L 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG L 66 CG CD NE CZ NH1 NH2 REMARK 470 SER L 67 OG REMARK 470 ASP L 70 CG OD1 OD2 REMARK 470 PHE L 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER L 76 OG REMARK 470 SER L 77 OG REMARK 470 LEU L 78 CG CD1 CD2 REMARK 470 GLU L 81 CG CD OE1 OE2 REMARK 470 ASP L 82 CG OD1 OD2 REMARK 470 PHE L 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR L 86 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN L 89 CG CD OE1 NE2 REMARK 470 GLN L 100 CG CD OE1 NE2 REMARK 470 THR L 102 OG1 CG2 REMARK 470 ARG L 103 CG CD NE CZ NH1 NH2 REMARK 470 LEU L 104 CG CD1 CD2 REMARK 470 GLU L 105 CG CD OE1 OE2 REMARK 470 ILE L 106 CG1 CG2 CD1 REMARK 470 LYS L 107 CG CD CE NZ REMARK 470 THR A 78 OG1 CG2 REMARK 470 SER A 79 OG REMARK 470 THR A 81 OG1 CG2 REMARK 470 LEU A 82 CG CD1 CD2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 SER A 99 OG REMARK 470 CYS A 120 SG REMARK 470 SER A 195 OG REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 CYS A 335 SG REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 GLU A 431 CG CD OE1 OE2 REMARK 470 VAL A 436 CG1 CG2 REMARK 470 LEU A 482 CD1 CD2 REMARK 470 ASP A 489 CG OD1 OD2 REMARK 470 SER A 493 OG REMARK 470 GLN A 497 CG CD OE1 NE2 REMARK 470 GLU A 498 CG CD OE1 OE2 REMARK 470 THR A 500 OG1 CG2 REMARK 470 LEU A 501 CG CD1 CD2 REMARK 470 ASP A 502 CG OD1 OD2 REMARK 470 GLN A 503 CG CD OE1 NE2 REMARK 470 VAL A 506 CG1 CG2 REMARK 470 SER A 507 OG REMARK 470 ASN A 508 CG OD1 ND2 REMARK 470 VAL A 510 CG1 CG2 REMARK 470 ASP A 511 CG OD1 OD2 REMARK 470 SER A 518 OG REMARK 470 GLU A 520 CG CD OE1 OE2 REMARK 470 ARG A 521 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 572 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 573 CG CD1 CD2 REMARK 470 SER A 574 OG REMARK 470 SER A 575 OG REMARK 470 LEU A 577 CG CD1 CD2 REMARK 470 MET A 584 CG SD CE REMARK 470 GLU A 595 CG CD OE1 OE2 REMARK 470 GLN A 603 CG CD OE1 NE2 REMARK 470 THR A 606 OG1 CG2 REMARK 470 CYS A 612 SG REMARK 470 CYS A 615 SG REMARK 470 GLU A 626 CG CD OE1 OE2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 ASP A 652 CG OD1 OD2 REMARK 470 CYS B 29 SG REMARK 470 CYS B 56 SG REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 LEU B 74 CG CD1 CD2 REMARK 470 VAL B 75 CG1 CG2 REMARK 470 ILE B 76 CG1 CG2 CD1 REMARK 470 SER B 77 OG REMARK 470 GLU B 106 OE1 OE2 REMARK 470 THR B 113 OG1 CG2 REMARK 470 PHE B 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 128 CG CD1 CD2 REMARK 470 ASN B 129 CG OD1 ND2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 63 49.78 -92.77 REMARK 500 ASN C 93 -95.79 57.86 REMARK 500 CYS C 99 -161.23 56.92 REMARK 500 PHE C 109 52.30 -90.76 REMARK 500 LYS C 121 -4.13 67.75 REMARK 500 TRP C 125 -6.71 68.02 REMARK 500 CYS C 138 -166.15 -161.74 REMARK 500 ILE C 187 -52.04 -124.57 REMARK 500 CYS H 22 140.12 -170.05 REMARK 500 THR H 28 -146.02 57.26 REMARK 500 ALA H 33 147.13 71.93 REMARK 500 LEU H 45 133.96 -172.30 REMARK 500 MET H 48 -159.33 -90.10 REMARK 500 ALA H 58 -177.08 63.51 REMARK 500 GLN H 62 116.79 -161.40 REMARK 500 LYS H 63 -65.24 -96.30 REMARK 500 THR H 71 149.09 67.98 REMARK 500 TYR H 80 -173.05 57.27 REMARK 500 ARG H 87 -166.70 -117.53 REMARK 500 GLU H 89 -159.87 60.60 REMARK 500 ASP H 90 19.83 56.80 REMARK 500 ASP H 101 -97.15 54.15 REMARK 500 TYR H 110 161.85 67.84 REMARK 500 SER L 14 -139.43 56.20 REMARK 500 VAL L 15 -60.48 -122.00 REMARK 500 SER L 26 -144.60 58.50 REMARK 500 ALA L 30 37.49 -142.79 REMARK 500 SER L 52 -5.29 69.17 REMARK 500 THR L 93 -59.96 -125.29 REMARK 500 ALA A 85 61.01 62.40 REMARK 500 GLU A 97 -141.14 59.89 REMARK 500 VAL A 111 -56.50 -128.95 REMARK 500 SER A 175 0.13 -65.74 REMARK 500 TYR A 182 59.57 -96.59 REMARK 500 LYS A 188 -4.05 69.58 REMARK 500 PRO A 477 44.07 -79.27 REMARK 500 GLN A 497 53.10 -94.44 REMARK 500 LEU A 501 -130.28 54.16 REMARK 500 GLN A 503 -0.70 66.42 REMARK 500 GLU A 522 -1.26 67.15 REMARK 500 ALA A 526 34.52 -99.87 REMARK 500 CYS A 534 51.09 -105.51 REMARK 500 ASP A 536 -2.63 67.80 REMARK 500 LEU A 654 51.52 -90.36 REMARK 500 HIS B 30 -60.66 -94.60 REMARK 500 THR B 113 -7.55 67.62 REMARK 500 LEU B 128 -169.59 -160.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-37249 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EBV GH/GL-GP42 IN COMPLEX WITH FAB 2C1 DBREF 8KHR C 34 223 UNP P0C6Z5 GP42_EBVG 34 223 DBREF 8KHR H 3 113 PDB 8KHR 8KHR 3 113 DBREF 8KHR L 1 107 PDB 8KHR 8KHR 1 107 DBREF1 8KHR A 20 674 UNP A0A0C7TVV8_EBVG DBREF2 8KHR A A0A0C7TVV8 20 674 DBREF1 8KHR B 27 133 UNP A0A0C7TRA4_EBVG DBREF2 8KHR B A0A0C7TRA4 27 133 SEQADV 8KHR HIS C 224 UNP P0C6Z5 EXPRESSION TAG SEQADV 8KHR HIS C 225 UNP P0C6Z5 EXPRESSION TAG SEQADV 8KHR HIS C 226 UNP P0C6Z5 EXPRESSION TAG SEQADV 8KHR HIS C 227 UNP P0C6Z5 EXPRESSION TAG SEQADV 8KHR HIS C 228 UNP P0C6Z5 EXPRESSION TAG SEQADV 8KHR HIS C 229 UNP P0C6Z5 EXPRESSION TAG SEQRES 1 C 196 GLY GLY ARG VAL ALA ALA ALA ALA ILE THR TRP VAL PRO SEQRES 2 C 196 LYS PRO ASN VAL GLU VAL TRP PRO VAL ASP PRO PRO PRO SEQRES 3 C 196 PRO VAL ASN PHE ASN LYS THR ALA GLU GLN GLU TYR GLY SEQRES 4 C 196 ASP LYS GLU VAL LYS LEU PRO HIS TRP THR PRO THR LEU SEQRES 5 C 196 HIS THR PHE GLN VAL PRO GLN ASN TYR THR LYS ALA ASN SEQRES 6 C 196 CYS THR TYR CYS ASN THR ARG GLU TYR THR PHE SER TYR SEQRES 7 C 196 LYS GLY CYS CYS PHE TYR PHE THR LYS LYS LYS HIS THR SEQRES 8 C 196 TRP ASN GLY CYS PHE GLN ALA CYS ALA GLU LEU TYR PRO SEQRES 9 C 196 CYS THR TYR PHE TYR GLY PRO THR PRO ASP ILE LEU PRO SEQRES 10 C 196 VAL VAL THR ARG ASN LEU ASN ALA ILE GLU SER LEU TRP SEQRES 11 C 196 VAL GLY VAL TYR ARG VAL GLY GLU GLY ASN TRP THR SER SEQRES 12 C 196 LEU ASP GLY GLY THR PHE LYS VAL TYR GLN ILE PHE GLY SEQRES 13 C 196 SER HIS CYS THR TYR VAL SER LYS PHE SER THR VAL PRO SEQRES 14 C 196 VAL SER HIS HIS GLU CYS SER PHE LEU LYS PRO CYS LEU SEQRES 15 C 196 CYS VAL SER GLN ARG SER ASN SER HIS HIS HIS HIS HIS SEQRES 16 C 196 HIS SEQRES 1 H 111 GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS PRO GLY SEQRES 2 H 111 SER SER VAL LYS VAL SER CYS ARG ALA SER GLY GLY THR SEQRES 3 H 111 PHE ASP THR TYR ALA ILE SER TRP VAL ARG GLN ALA PRO SEQRES 4 H 111 GLY HIS GLY LEU GLU TRP MET GLY GLY ILE ILE PRO VAL SEQRES 5 H 111 SER GLY THR ALA ASN TYR ALA GLN LYS PHE GLN GLY ARG SEQRES 6 H 111 VAL THR ILE THR ALA ASP GLU SER THR GLY THR ALA TYR SEQRES 7 H 111 MET ASP LEU SER SER LEU ARG SER GLU ASP THR ALA VAL SEQRES 8 H 111 TYR TYR CYS ALA ARG VAL PRO ASP TYR GLY THR ASN THR SEQRES 9 H 111 PRO PHE ASP TYR TRP GLY GLN SEQRES 1 L 107 ASP ILE ARG LEU THR GLN SER PRO SER SER LEU PRO ALA SEQRES 2 L 107 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 107 GLN ASP ILE ALA THR TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 107 PRO GLY ARG ALA PRO ASN LEU LEU ILE TYR ALA THR SER SEQRES 5 L 107 THR LEU GLN SER GLY VAL PRO PRO ARG PHE SER GLY SER SEQRES 6 L 107 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 107 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 L 107 ARG THR TYR PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 L 107 GLU ILE LYS SEQRES 1 A 655 LEU SER GLU VAL LYS LEU HIS LEU ASP ILE GLU GLY HIS SEQRES 2 A 655 ALA SER HIS TYR THR ILE PRO TRP THR GLU LEU MET ALA SEQRES 3 A 655 LYS VAL PRO GLY LEU SER PRO GLU ALA LEU TRP ARG GLU SEQRES 4 A 655 ALA ASN VAL THR GLU ASP LEU ALA SER MET LEU ASN ARG SEQRES 5 A 655 TYR LYS LEU ILE TYR LYS THR SER GLY THR LEU GLY ILE SEQRES 6 A 655 ALA LEU ALA GLU PRO VAL ASP ILE PRO ALA VAL SER GLU SEQRES 7 A 655 GLY SER MET GLN VAL ASP ALA SER LYS VAL HIS PRO GLY SEQRES 8 A 655 VAL ILE SER GLY LEU ASN SER PRO ALA CYS MET LEU SER SEQRES 9 A 655 ALA PRO LEU GLU LYS GLN LEU PHE TYR TYR ILE GLY THR SEQRES 10 A 655 MET LEU PRO ASN THR ARG PRO HIS SER TYR VAL PHE TYR SEQRES 11 A 655 GLN LEU ARG CYS HIS LEU SER TYR VAL ALA LEU SER ILE SEQRES 12 A 655 ASN GLY ASP LYS PHE GLN TYR THR GLY ALA MET THR SER SEQRES 13 A 655 LYS PHE LEU MET GLY THR TYR LYS ARG VAL THR GLU LYS SEQRES 14 A 655 GLY ASP GLU HIS VAL LEU SER LEU VAL PHE GLY LYS THR SEQRES 15 A 655 LYS ASP LEU PRO ASP LEU ARG GLY PRO PHE SER TYR PRO SEQRES 16 A 655 SER LEU THR SER ALA GLN SER GLY ASP TYR SER LEU VAL SEQRES 17 A 655 ILE VAL THR THR PHE VAL HIS TYR ALA ASN PHE HIS ASN SEQRES 18 A 655 TYR PHE VAL PRO ASN LEU LYS ASP MET PHE SER ARG ALA SEQRES 19 A 655 VAL THR MET THR ALA ALA SER TYR ALA ARG TYR VAL LEU SEQRES 20 A 655 GLN LYS LEU VAL LEU LEU GLU MET LYS GLY GLY CYS ARG SEQRES 21 A 655 GLU PRO GLU LEU ASP THR GLU THR LEU THR THR MET PHE SEQRES 22 A 655 GLU VAL SER VAL ALA PHE PHE LYS VAL GLY HIS ALA VAL SEQRES 23 A 655 GLY GLU THR GLY ASN GLY CYS VAL ASP LEU ARG TRP LEU SEQRES 24 A 655 ALA LYS SER PHE PHE GLU LEU THR VAL LEU LYS ASP ILE SEQRES 25 A 655 ILE GLY ILE CYS TYR GLY ALA THR VAL LYS GLY MET GLN SEQRES 26 A 655 SER TYR GLY LEU GLU ARG LEU ALA ALA MET LEU MET ALA SEQRES 27 A 655 THR VAL LYS MET GLU GLU LEU GLY HIS LEU THR THR GLU SEQRES 28 A 655 LYS GLN GLU TYR ALA LEU ARG LEU ALA THR VAL GLY TYR SEQRES 29 A 655 PRO LYS ALA GLY VAL TYR SER GLY LEU ILE GLY GLY ALA SEQRES 30 A 655 THR SER VAL LEU LEU SER ALA TYR ASN ARG HIS PRO LEU SEQRES 31 A 655 PHE GLN PRO LEU HIS THR VAL MET ARG GLU THR LEU PHE SEQRES 32 A 655 ILE GLY SER HIS VAL VAL LEU ARG GLU LEU ARG LEU ASN SEQRES 33 A 655 VAL THR THR GLN GLY PRO ASN LEU ALA LEU TYR GLN LEU SEQRES 34 A 655 LEU SER THR ALA LEU CYS SER ALA LEU GLU ILE GLY GLU SEQRES 35 A 655 VAL LEU ARG GLY LEU ALA LEU GLY THR GLU SER GLY LEU SEQRES 36 A 655 PHE SER PRO CYS TYR LEU SER LEU ARG PHE ASP LEU THR SEQRES 37 A 655 ARG ASP LYS LEU LEU SER MET ALA PRO GLN GLU ALA THR SEQRES 38 A 655 LEU ASP GLN ALA ALA VAL SER ASN ALA VAL ASP GLY PHE SEQRES 39 A 655 LEU GLY ARG LEU SER LEU GLU ARG GLU ASP ARG ASP ALA SEQRES 40 A 655 TRP HIS LEU PRO ALA TYR LYS CYS VAL ASP ARG LEU ASP SEQRES 41 A 655 LYS VAL LEU MET ILE ILE PRO LEU ILE ASN VAL THR PHE SEQRES 42 A 655 ILE ILE SER SER ASP ARG GLU VAL ARG GLY SER ALA LEU SEQRES 43 A 655 TYR GLU ALA SER THR THR TYR LEU SER SER SER LEU PHE SEQRES 44 A 655 LEU SER PRO VAL ILE MET ASN LYS CYS SER GLN GLY ALA SEQRES 45 A 655 VAL ALA GLY GLU PRO ARG GLN ILE PRO LYS ILE GLN ASN SEQRES 46 A 655 PHE THR ARG THR GLN LYS SER CYS ILE PHE CYS GLY PHE SEQRES 47 A 655 ALA LEU LEU SER TYR ASP GLU LYS GLU GLY LEU GLU THR SEQRES 48 A 655 THR THR TYR ILE THR SER GLN GLU VAL GLN ASN SER ILE SEQRES 49 A 655 LEU SER SER ASN TYR PHE ASP PHE ASP ASN LEU HIS VAL SEQRES 50 A 655 HIS TYR LEU LEU LEU THR THR ASN GLY THR VAL MET GLU SEQRES 51 A 655 ILE ALA GLY LEU TYR SEQRES 1 B 107 PRO CYS CYS HIS VAL THR GLN LEU ARG ALA GLN HIS LEU SEQRES 2 B 107 LEU ALA LEU GLU ASN ILE SER ASP ILE TYR LEU VAL SER SEQRES 3 B 107 ASN GLN THR CYS ASP GLY PHE SER LEU ALA SER LEU ASN SEQRES 4 B 107 SER PRO LYS ASN GLY SER ASN GLN LEU VAL ILE SER ARG SEQRES 5 B 107 CYS ALA ASN GLY LEU ASN VAL VAL SER PHE PHE ILE SER SEQRES 6 B 107 ILE LEU LYS ARG SER SER SER ALA LEU THR GLY HIS LEU SEQRES 7 B 107 ARG GLU LEU LEU THR THR LEU GLU THR LEU TYR GLY SER SEQRES 8 B 107 PHE SER VAL GLU ASP LEU PHE GLY ALA ASN LEU ASN ARG SEQRES 9 B 107 TYR ALA TRP HELIX 1 AA1 THR C 66 TYR C 71 1 6 HELIX 2 AA2 GLY C 127 ALA C 131 5 5 HELIX 3 AA3 ILE C 148 ASN C 155 1 8 HELIX 4 AA4 GLN L 79 PHE L 83 5 5 HELIX 5 AA5 TRP A 40 VAL A 47 1 8 HELIX 6 AA6 SER A 51 ASN A 60 1 10 HELIX 7 AA7 ASP A 64 ILE A 75 1 12 HELIX 8 AA8 SER A 123 PHE A 131 1 9 HELIX 9 AA9 THR A 141 PHE A 148 1 8 HELIX 10 AB1 GLU A 187 GLY A 189 5 3 HELIX 11 AB2 SER A 212 SER A 215 5 4 HELIX 12 AB3 THR A 231 PHE A 242 1 12 HELIX 13 AB4 ASN A 245 MET A 256 1 12 HELIX 14 AB5 THR A 257 MET A 274 1 18 HELIX 15 AB6 ASP A 284 GLU A 307 1 24 HELIX 16 AB7 LEU A 315 GLY A 337 1 23 HELIX 17 AB8 SER A 345 VAL A 359 1 15 HELIX 18 AB9 LYS A 360 LEU A 364 5 5 HELIX 19 AC1 THR A 368 TYR A 383 1 16 HELIX 20 AC2 GLY A 391 HIS A 407 1 17 HELIX 21 AC3 HIS A 414 ARG A 433 1 20 HELIX 22 AC4 GLN A 439 LEU A 453 1 15 HELIX 23 AC5 SER A 455 GLY A 469 1 15 HELIX 24 AC6 THR A 470 LEU A 474 5 5 HELIX 25 AC7 THR A 487 SER A 493 1 7 HELIX 26 AC8 ALA A 504 LEU A 517 1 14 HELIX 27 AC9 SER A 636 SER A 646 1 11 HELIX 28 AD1 ALA B 41 ILE B 45 5 5 HELIX 29 AD2 GLY B 82 SER B 97 1 16 HELIX 30 AD3 SER B 98 LEU B 100 5 3 HELIX 31 AD4 THR B 101 GLU B 112 1 12 HELIX 32 AD5 LEU B 114 SER B 119 1 6 SHEET 1 AA1 2 LEU C 162 TRP C 163 0 SHEET 2 AA1 2 TYR C 194 VAL C 195 -1 O VAL C 195 N LEU C 162 SHEET 1 AA2 3 GLU H 46 TRP H 47 0 SHEET 2 AA2 3 TRP H 36 ARG H 38 -1 N ARG H 38 O GLU H 46 SHEET 3 AA2 3 TYR H 94 CYS H 96 -1 O TYR H 95 N VAL H 37 SHEET 1 AA3 4 ASN L 45 ALA L 50 0 SHEET 2 AA3 4 TYR L 32 GLN L 38 -1 N TRP L 35 O LEU L 47 SHEET 3 AA3 4 THR L 85 LEU L 91 -1 O GLN L 89 N ALA L 34 SHEET 4 AA3 4 PHE L 98 GLN L 100 -1 O PHE L 98 N GLN L 90 SHEET 1 AA4 5 HIS A 35 PRO A 39 0 SHEET 2 AA4 5 GLU A 22 LEU A 27 -1 N LEU A 25 O TYR A 36 SHEET 3 AA4 5 ASP B 47 LEU B 50 1 O ILE B 48 N HIS A 26 SHEET 4 AA4 5 LEU B 61 ASN B 65 -1 O SER B 63 N TYR B 49 SHEET 5 AA4 5 SER B 77 ASN B 81 -1 O ALA B 80 N ALA B 62 SHEET 1 AA5 3 MET A 100 VAL A 102 0 SHEET 2 AA5 3 ALA A 119 LEU A 122 1 O LEU A 122 N VAL A 102 SHEET 3 AA5 3 CYS A 312 ASP A 314 -1 O VAL A 313 N MET A 121 SHEET 1 AA6 2 ILE A 134 THR A 136 0 SHEET 2 AA6 2 ARG A 152 HIS A 154 -1 O CYS A 153 N GLY A 135 SHEET 1 AA7 3 PHE A 167 THR A 170 0 SHEET 2 AA7 3 TYR A 157 ILE A 162 -1 N ILE A 162 O PHE A 167 SHEET 3 AA7 3 THR A 339 LYS A 341 -1 O THR A 339 N ALA A 159 SHEET 1 AA8 4 PHE A 177 LEU A 178 0 SHEET 2 AA8 4 PHE A 198 LYS A 200 -1 O PHE A 198 N LEU A 178 SHEET 3 AA8 4 TYR A 224 VAL A 227 -1 O SER A 225 N GLY A 199 SHEET 4 AA8 4 THR A 217 GLN A 220 -1 N SER A 218 O LEU A 226 SHEET 1 AA9 2 ARG A 184 VAL A 185 0 SHEET 2 AA9 2 GLU A 191 HIS A 192 -1 O HIS A 192 N ARG A 184 SHEET 1 AB1 5 VAL A 541 PRO A 546 0 SHEET 2 AB1 5 VAL A 550 SER A 555 -1 O ILE A 554 N LEU A 542 SHEET 3 AB1 5 PHE A 578 ILE A 583 -1 O PHE A 578 N SER A 555 SHEET 4 AB1 5 TYR A 566 GLU A 567 -1 N TYR A 566 O LEU A 579 SHEET 5 AB1 5 ARG A 597 GLN A 598 1 O ARG A 597 N GLU A 567 SHEET 1 AB2 5 LYS A 601 ILE A 602 0 SHEET 2 AB2 5 VAL A 667 ILE A 670 1 O GLU A 669 N ILE A 602 SHEET 3 AB2 5 VAL A 656 LEU A 661 -1 N LEU A 660 O MET A 668 SHEET 4 AB2 5 ALA A 618 ASP A 623 -1 N LEU A 620 O LEU A 659 SHEET 5 AB2 5 LEU A 628 TYR A 633 -1 O THR A 630 N SER A 621 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS A 454 CYS A 478 1555 1555 2.08 SSBOND 3 CYS A 534 CYS A 587 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000