data_8OFC # _entry.id 8OFC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.390 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8OFC pdb_00008ofc 10.2210/pdb8ofc/pdb WWPDB D_1292129184 ? ? BMRB 34798 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-02-07 2 'Structure model' 1 1 2024-03-06 3 'Structure model' 1 2 2024-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8OFC _pdbx_database_status.recvd_initial_deposition_date 2023-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of an i-motif domain with tge cytosine analog 1,3-diaza-2-oxophenoxacione (tC) at neutral pH' _pdbx_database_related.db_id 34798 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email cgonzalez@iqfr.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mir, B.' 1 ? 'Serrano-Chacon, I.' 2 ? 'Terrazas, M.' 3 ? 'Gandioso, A.' 4 ? 'Garavis, M.' 5 ? 'Orozco, M.' 6 ? 'Escaja, N.' 7 ? 'Gonzalez, C.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 3375 _citation.page_last 3389 _citation.title ;Site-specific incorporation of a fluorescent nucleobase analog enhances i-motif stability and allows monitoring of i-motif folding inside cells. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae106 _citation.pdbx_database_id_PubMed 38366792 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mir, B.' 1 ? primary 'Serrano-Chacon, I.' 2 ? primary 'Medina, P.' 3 ? primary 'Macaluso, V.' 4 ? primary 'Terrazas, M.' 5 ? primary 'Gandioso, A.' 6 ? primary 'Garavis, M.' 7 ? primary 'Orozco, M.' 8 ? primary 'Escaja, N.' 9 ? primary 'Gonzalez, C.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3') ; _entity.formula_weight 6719.344 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(DC)(YCO)(DG)(DT)(DT)(DC)(DNR)(DG)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(DG)(DT)(DT)(DC) (DNR)(DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can CXGTTCCGTTTTTCCGTTCCGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 YCO n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DC n 1 7 DNR n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DT n 1 13 DT n 1 14 DC n 1 15 DC n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DC n 1 20 DNR n 1 21 DG n 1 22 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DNR 'DNA linking' n ;2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE ; ? 'C9 H15 N3 O7 P 1' 308.205 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 YCO 'DNA linking' n '3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-pyrimido[5,4-b][1,4]benzoxazin-2(3H)-one' ? 'C15 H16 N3 O8 P' 397.277 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 YCO 2 2 2 YCO YCO A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DNR 7 7 7 DNR DNR A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DNR 20 20 20 DNR DNR A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8OFC _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8OFC _struct.title 'Structure of an i-motif domain with the cytosine analog 1,3-diaza-2-oxophenoxacione (tC) at neutral pH' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8OFC _struct_keywords.text 'I-motif, fluorescent, non-canonical DNA, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8OFC _struct_ref.pdbx_db_accession 8OFC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8OFC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8OFC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1170 ? 1 MORE 7 ? 1 'SSA (A^2)' 3540 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A YCO 2 P ? ? A DC 1 A YCO 2 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? A YCO 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A YCO 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A DC 6 "O3'" ? ? ? 1_555 A DNR 7 P ? ? A DC 6 A DNR 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? A DNR 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A DNR 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? A DC 19 "O3'" ? ? ? 1_555 A DNR 20 P ? ? A DC 19 A DNR 20 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale6 covale both ? A DNR 20 "O3'" ? ? ? 1_555 A DG 21 P ? ? A DNR 20 A DG 21 1_555 ? ? ? ? ? ? ? 1.627 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 16 N1 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 16 O6 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 16 N2 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A YCO 2 O2 ? ? ? 1_555 A DNR 20 N4 ? ? A YCO 2 A DNR 20 1_555 ? ? ? ? ? ? 'YCO-DNR MISPAIR' ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 14 N3 ? ? A DG 3 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 14 O2 ? ? A DG 3 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 14 N4 ? ? A DG 3 A DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 21 N3 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 21 N1 ? ? A DC 6 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 21 O6 ? ? A DC 6 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 21 N2 ? ? A DC 6 A DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DNR 7 N4 ? ? ? 1_555 A DC 15 O2 ? ? A DNR 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? A DNR 7 O2 ? ? ? 1_555 A DC 15 N4 ? ? A DNR 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 16 N3 ? ? A DG 8 A DG 16 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N3 ? ? ? 1_555 A DG 16 N2 ? ? A DG 8 A DG 16 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 19 N3 ? ? A DG 8 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 19 O2 ? ? A DG 8 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 19 N4 ? ? A DG 8 A DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.35 2 2 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.33 3 3 OP1 A DC 14 ? ? "HO3'" A DT 22 ? ? 1.39 4 3 "HO5'" A DC 1 ? ? O4 A DT 11 ? ? 1.57 5 4 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.34 6 5 "HO5'" A DC 1 ? ? OP1 A DT 9 ? ? 1.34 7 6 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.33 8 7 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.33 9 8 OP1 A DC 14 ? ? "HO3'" A DT 22 ? ? 1.39 10 8 "HO5'" A DC 1 ? ? O4 A DT 11 ? ? 1.57 11 9 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.34 12 10 "HO5'" A DC 1 ? ? OP1 A YCO 2 ? ? 1.34 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.95 108.30 3.65 0.30 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.20 118.90 5.30 0.60 N 3 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.95 121.90 -5.95 0.70 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.31 108.30 2.01 0.30 N 5 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.05 122.90 -3.85 0.60 N 6 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.68 108.30 3.38 0.30 N 7 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.62 121.90 -4.28 0.70 N 8 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.89 108.30 3.59 0.30 N 9 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.98 122.90 -3.92 0.60 N 10 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.75 108.30 2.45 0.30 N 11 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 113.22 108.30 4.92 0.30 N 12 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.25 122.90 -3.65 0.60 N 13 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.48 108.30 2.18 0.30 N 14 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.93 122.90 -3.97 0.60 N 15 1 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.47 118.90 4.57 0.60 N 16 1 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.57 121.90 -5.33 0.70 N 17 1 N3 A DC 14 ? ? C4 A DC 14 ? ? N4 A DC 14 ? ? 113.19 118.00 -4.81 0.70 N 18 1 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.78 118.90 3.88 0.60 N 19 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.92 121.90 -4.98 0.70 N 20 1 "C3'" A DG 16 ? ? "C2'" A DG 16 ? ? "C1'" A DG 16 ? ? 97.59 102.40 -4.81 0.80 N 21 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.20 108.30 3.90 0.30 N 22 1 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 117.43 108.30 9.13 0.30 N 23 1 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.66 108.30 2.36 0.30 N 24 1 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.49 121.90 -4.41 0.70 N 25 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.76 108.30 2.46 0.30 N 26 1 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.92 108.30 2.62 0.30 N 27 1 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.27 122.90 -3.63 0.60 N 28 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.29 108.30 1.99 0.30 N 29 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.74 118.90 4.84 0.60 N 30 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.28 121.90 -5.62 0.70 N 31 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.25 108.30 2.95 0.30 N 32 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.21 122.90 -3.69 0.60 N 33 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.33 108.30 3.03 0.30 N 34 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.66 108.30 2.36 0.30 N 35 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.46 108.30 2.16 0.30 N 36 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.88 122.90 -4.02 0.60 N 37 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.13 108.30 2.83 0.30 N 38 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.89 108.30 2.59 0.30 N 39 2 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.17 122.30 -4.13 0.60 N 40 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.43 108.30 3.13 0.30 N 41 2 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.46 108.30 4.16 0.30 N 42 2 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.40 118.90 4.50 0.60 N 43 2 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.66 121.90 -5.24 0.70 N 44 2 N3 A DC 14 ? ? C4 A DC 14 ? ? N4 A DC 14 ? ? 113.42 118.00 -4.58 0.70 N 45 2 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.51 118.90 3.61 0.60 N 46 2 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.08 121.90 -4.82 0.70 N 47 2 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.54 108.30 3.24 0.30 N 48 2 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 117.99 108.30 9.69 0.30 N 49 2 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 111.11 108.30 2.81 0.30 N 50 2 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.54 121.90 -4.36 0.70 N 51 2 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.23 108.30 1.93 0.30 N 52 2 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.17 108.30 2.87 0.30 N 53 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.74 108.30 4.44 0.30 N 54 3 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.85 118.90 5.95 0.60 N 55 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.03 121.90 -5.87 0.70 N 56 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.14 108.30 3.84 0.30 N 57 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.96 108.30 2.66 0.30 N 58 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.46 108.30 2.16 0.30 N 59 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.43 108.30 2.13 0.30 N 60 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.86 122.90 -4.04 0.60 N 61 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.02 108.30 3.72 0.30 N 62 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.67 122.90 -4.23 0.60 N 63 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.48 108.30 2.18 0.30 N 64 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.14 122.90 -3.76 0.60 N 65 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.99 108.30 3.69 0.30 N 66 3 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.43 108.30 3.13 0.30 N 67 3 "O4'" A DC 14 ? ? "C1'" A DC 14 ? ? N1 A DC 14 ? ? 110.38 108.30 2.08 0.30 N 68 3 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.34 118.90 4.44 0.60 N 69 3 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.92 121.90 -4.98 0.70 N 70 3 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.93 121.90 -4.97 0.70 N 71 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.90 108.30 4.60 0.30 N 72 3 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 117.02 108.30 8.72 0.30 N 73 3 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.84 108.30 2.54 0.30 N 74 3 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 110.71 108.30 2.41 0.30 N 75 3 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.47 121.90 -4.43 0.70 N 76 3 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.31 108.30 2.01 0.30 N 77 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.84 108.30 2.54 0.30 N 78 4 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.54 118.90 4.64 0.60 N 79 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.09 121.90 -5.81 0.70 N 80 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.42 108.30 3.12 0.30 N 81 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.28 122.90 -3.62 0.60 N 82 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.52 108.30 3.22 0.30 N 83 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.23 108.30 1.93 0.30 N 84 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.54 121.90 -4.36 0.70 N 85 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.46 122.90 -4.44 0.60 N 86 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.62 108.30 2.32 0.30 N 87 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 113.37 108.30 5.07 0.30 N 88 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.40 108.30 2.10 0.30 N 89 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.26 122.90 -3.64 0.60 N 90 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.95 122.90 -3.95 0.60 N 91 4 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.27 118.90 4.37 0.60 N 92 4 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.69 121.90 -5.21 0.70 N 93 4 N3 A DC 14 ? ? C4 A DC 14 ? ? N4 A DC 14 ? ? 113.46 118.00 -4.54 0.70 N 94 4 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 123.01 118.90 4.11 0.60 N 95 4 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.50 121.90 -5.40 0.70 N 96 4 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 118.80 108.30 10.50 0.30 N 97 4 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.04 122.90 -3.86 0.60 N 98 4 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.26 108.30 1.96 0.30 N 99 4 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.00 108.30 2.70 0.30 N 100 4 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.37 108.30 2.07 0.30 N 101 4 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.30 108.30 3.00 0.30 N 102 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.87 108.30 3.57 0.30 N 103 5 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.64 118.90 4.74 0.60 N 104 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.36 121.90 -5.54 0.70 N 105 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.20 108.30 3.90 0.30 N 106 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.22 122.90 -3.68 0.60 N 107 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.09 108.30 2.79 0.30 N 108 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.18 108.30 1.88 0.30 N 109 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.52 121.90 -4.38 0.70 N 110 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.97 122.90 -3.93 0.60 N 111 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.49 108.30 3.19 0.30 N 112 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 113.37 108.30 5.07 0.30 N 113 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.85 122.90 -4.05 0.60 N 114 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.30 108.30 4.00 0.30 N 115 5 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.38 108.30 2.08 0.30 N 116 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.27 122.90 -3.63 0.60 N 117 5 "O4'" A DC 14 ? ? "C1'" A DC 14 ? ? N1 A DC 14 ? ? 110.52 108.30 2.22 0.30 N 118 5 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 122.94 118.90 4.04 0.60 N 119 5 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.75 121.90 -5.15 0.70 N 120 5 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.94 118.90 4.04 0.60 N 121 5 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.70 121.90 -5.20 0.70 N 122 5 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.75 108.30 3.45 0.30 N 123 5 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 118.24 108.30 9.94 0.30 N 124 5 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.29 108.30 1.99 0.30 N 125 5 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 110.89 108.30 2.59 0.30 N 126 5 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.55 121.90 -4.35 0.70 N 127 5 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.80 108.30 2.50 0.30 N 128 5 N1 A DG 21 ? ? C6 A DG 21 ? ? O6 A DG 21 ? ? 115.83 119.90 -4.07 0.60 N 129 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.92 108.30 2.62 0.30 N 130 6 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.28 118.90 5.38 0.60 N 131 6 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.47 121.90 -6.43 0.70 N 132 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.33 108.30 3.03 0.30 N 133 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.56 108.30 3.26 0.30 N 134 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.66 108.30 2.36 0.30 N 135 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.95 122.90 -3.95 0.60 N 136 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.07 108.30 3.77 0.30 N 137 6 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.55 122.30 -3.75 0.60 N 138 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.21 108.30 2.91 0.30 N 139 6 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 113.12 108.30 4.82 0.30 N 140 6 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.89 118.90 4.99 0.60 N 141 6 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.10 121.90 -5.80 0.70 N 142 6 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.63 118.90 3.73 0.60 N 143 6 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.02 121.90 -4.88 0.70 N 144 6 "C3'" A DG 16 ? ? "C2'" A DG 16 ? ? "C1'" A DG 16 ? ? 97.52 102.40 -4.88 0.80 N 145 6 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.41 108.30 4.11 0.30 N 146 6 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 116.93 108.30 8.63 0.30 N 147 6 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.67 108.30 2.37 0.30 N 148 6 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.10 108.30 2.80 0.30 N 149 6 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.59 108.30 2.29 0.30 N 150 6 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.64 108.30 4.34 0.30 N 151 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.65 108.30 2.35 0.30 N 152 7 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.80 118.90 4.90 0.60 N 153 7 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.16 121.90 -5.74 0.70 N 154 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.98 108.30 2.68 0.30 N 155 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.22 122.90 -3.68 0.60 N 156 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.89 108.30 3.59 0.30 N 157 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.60 121.90 -4.30 0.70 N 158 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.41 108.30 2.11 0.30 N 159 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.94 122.90 -3.96 0.60 N 160 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.93 108.30 2.63 0.30 N 161 7 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.75 108.30 4.45 0.30 N 162 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.51 108.30 2.21 0.30 N 163 7 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.23 122.90 -3.67 0.60 N 164 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.84 122.90 -4.06 0.60 N 165 7 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.26 118.90 4.36 0.60 N 166 7 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.72 121.90 -5.18 0.70 N 167 7 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.85 118.90 3.95 0.60 N 168 7 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.60 121.90 -5.30 0.70 N 169 7 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.90 108.30 3.60 0.30 N 170 7 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 117.74 108.30 9.44 0.30 N 171 7 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.83 108.30 2.53 0.30 N 172 7 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 110.20 108.30 1.90 0.30 N 173 7 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.26 121.90 -4.64 0.70 N 174 7 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.24 108.30 1.94 0.30 N 175 7 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.94 108.30 2.64 0.30 N 176 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.74 108.30 4.44 0.30 N 177 8 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.85 118.90 5.95 0.60 N 178 8 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.03 121.90 -5.87 0.70 N 179 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.14 108.30 3.84 0.30 N 180 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.96 108.30 2.66 0.30 N 181 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.46 108.30 2.16 0.30 N 182 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.43 108.30 2.13 0.30 N 183 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.86 122.90 -4.04 0.60 N 184 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.02 108.30 3.72 0.30 N 185 8 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.67 122.90 -4.23 0.60 N 186 8 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.48 108.30 2.18 0.30 N 187 8 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.14 122.90 -3.76 0.60 N 188 8 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.99 108.30 3.69 0.30 N 189 8 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.43 108.30 3.13 0.30 N 190 8 "O4'" A DC 14 ? ? "C1'" A DC 14 ? ? N1 A DC 14 ? ? 110.38 108.30 2.08 0.30 N 191 8 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.34 118.90 4.44 0.60 N 192 8 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.92 121.90 -4.98 0.70 N 193 8 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.93 121.90 -4.97 0.70 N 194 8 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.90 108.30 4.60 0.30 N 195 8 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 117.02 108.30 8.72 0.30 N 196 8 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.84 108.30 2.54 0.30 N 197 8 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 110.71 108.30 2.41 0.30 N 198 8 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.47 121.90 -4.43 0.70 N 199 8 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.31 108.30 2.01 0.30 N 200 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.44 108.30 2.14 0.30 N 201 9 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.80 118.90 4.90 0.60 N 202 9 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.80 121.90 -6.10 0.70 N 203 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.89 108.30 2.59 0.30 N 204 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.18 122.90 -3.72 0.60 N 205 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.78 108.30 2.48 0.30 N 206 9 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.03 119.90 -3.87 0.60 N 207 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.31 108.30 2.01 0.30 N 208 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.28 108.30 2.98 0.30 N 209 9 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.77 108.30 4.47 0.30 N 210 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.71 108.30 3.41 0.30 N 211 9 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.17 108.30 3.87 0.30 N 212 9 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.49 118.90 4.59 0.60 N 213 9 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.45 121.90 -5.45 0.70 N 214 9 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 123.04 118.90 4.14 0.60 N 215 9 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.66 121.90 -5.24 0.70 N 216 9 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.60 108.30 3.30 0.30 N 217 9 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 119.66 108.30 11.36 0.30 N 218 9 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.54 121.90 -4.36 0.70 N 219 9 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.48 108.30 2.18 0.30 N 220 9 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.54 108.30 3.24 0.30 N 221 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.49 108.30 3.19 0.30 N 222 10 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.58 118.90 5.68 0.60 N 223 10 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.35 121.90 -6.55 0.70 N 224 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.03 108.30 2.73 0.30 N 225 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.14 108.30 2.84 0.30 N 226 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.66 121.90 -4.24 0.70 N 227 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.91 108.30 2.61 0.30 N 228 10 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.08 122.90 -3.82 0.60 N 229 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.46 108.30 2.16 0.30 N 230 10 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.53 108.30 4.23 0.30 N 231 10 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.26 122.90 -3.64 0.60 N 232 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.21 108.30 2.91 0.30 N 233 10 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.61 108.30 4.31 0.30 N 234 10 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 124.00 118.90 5.10 0.60 N 235 10 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.00 121.90 -5.90 0.70 N 236 10 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.64 108.30 4.34 0.30 N 237 10 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.06 121.90 -4.84 0.70 N 238 10 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.13 108.30 3.83 0.30 N 239 10 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? "C2'" A DT 17 ? ? 100.99 105.90 -4.91 0.80 N 240 10 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 116.64 108.30 8.34 0.30 N 241 10 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.65 108.30 2.35 0.30 N 242 10 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.29 108.30 2.99 0.30 N 243 10 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.49 121.90 -4.41 0.70 N 244 10 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.70 108.30 2.40 0.30 N 245 10 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.30 108.30 4.00 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 9 ? ? 0.070 'SIDE CHAIN' 2 1 DC A 14 ? ? 0.058 'SIDE CHAIN' 3 1 DT A 17 ? ? 0.185 'SIDE CHAIN' 4 1 DG A 21 ? ? 0.066 'SIDE CHAIN' 5 2 DG A 8 ? ? 0.067 'SIDE CHAIN' 6 2 DT A 17 ? ? 0.175 'SIDE CHAIN' 7 2 DG A 21 ? ? 0.058 'SIDE CHAIN' 8 3 DC A 1 ? ? 0.086 'SIDE CHAIN' 9 3 DG A 8 ? ? 0.062 'SIDE CHAIN' 10 3 DT A 10 ? ? 0.080 'SIDE CHAIN' 11 3 DT A 12 ? ? 0.092 'SIDE CHAIN' 12 3 DT A 13 ? ? 0.086 'SIDE CHAIN' 13 3 DC A 14 ? ? 0.104 'SIDE CHAIN' 14 3 DG A 16 ? ? 0.065 'SIDE CHAIN' 15 3 DT A 17 ? ? 0.185 'SIDE CHAIN' 16 3 DG A 21 ? ? 0.095 'SIDE CHAIN' 17 3 DT A 22 ? ? 0.104 'SIDE CHAIN' 18 4 DC A 14 ? ? 0.070 'SIDE CHAIN' 19 4 DT A 17 ? ? 0.103 'SIDE CHAIN' 20 4 DC A 19 ? ? 0.110 'SIDE CHAIN' 21 4 DG A 21 ? ? 0.061 'SIDE CHAIN' 22 5 DC A 1 ? ? 0.091 'SIDE CHAIN' 23 5 DG A 3 ? ? 0.110 'SIDE CHAIN' 24 5 DG A 8 ? ? 0.068 'SIDE CHAIN' 25 5 DC A 14 ? ? 0.092 'SIDE CHAIN' 26 5 DT A 17 ? ? 0.143 'SIDE CHAIN' 27 5 DG A 21 ? ? 0.083 'SIDE CHAIN' 28 6 DG A 3 ? ? 0.077 'SIDE CHAIN' 29 6 DG A 8 ? ? 0.065 'SIDE CHAIN' 30 6 DT A 10 ? ? 0.096 'SIDE CHAIN' 31 6 DT A 11 ? ? 0.076 'SIDE CHAIN' 32 6 DT A 12 ? ? 0.065 'SIDE CHAIN' 33 6 DT A 17 ? ? 0.169 'SIDE CHAIN' 34 6 DC A 19 ? ? 0.062 'SIDE CHAIN' 35 6 DG A 21 ? ? 0.075 'SIDE CHAIN' 36 7 DG A 8 ? ? 0.052 'SIDE CHAIN' 37 7 DT A 11 ? ? 0.067 'SIDE CHAIN' 38 7 DC A 14 ? ? 0.083 'SIDE CHAIN' 39 7 DT A 17 ? ? 0.178 'SIDE CHAIN' 40 8 DC A 1 ? ? 0.086 'SIDE CHAIN' 41 8 DG A 8 ? ? 0.062 'SIDE CHAIN' 42 8 DT A 10 ? ? 0.080 'SIDE CHAIN' 43 8 DT A 12 ? ? 0.092 'SIDE CHAIN' 44 8 DT A 13 ? ? 0.086 'SIDE CHAIN' 45 8 DC A 14 ? ? 0.104 'SIDE CHAIN' 46 8 DG A 16 ? ? 0.065 'SIDE CHAIN' 47 8 DT A 17 ? ? 0.185 'SIDE CHAIN' 48 8 DG A 21 ? ? 0.095 'SIDE CHAIN' 49 8 DT A 22 ? ? 0.104 'SIDE CHAIN' 50 9 DT A 12 ? ? 0.074 'SIDE CHAIN' 51 9 DT A 17 ? ? 0.171 'SIDE CHAIN' 52 9 DC A 19 ? ? 0.071 'SIDE CHAIN' 53 9 DG A 21 ? ? 0.069 'SIDE CHAIN' 54 10 DG A 3 ? ? 0.070 'SIDE CHAIN' 55 10 DG A 8 ? ? 0.067 'SIDE CHAIN' 56 10 DT A 17 ? ? 0.150 'SIDE CHAIN' 57 10 DC A 19 ? ? 0.065 'SIDE CHAIN' 58 10 DG A 21 ? ? 0.066 'SIDE CHAIN' # _pdbx_entry_details.entry_id 8OFC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_nmr_ensemble.entry_id 8OFC _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8OFC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;500 uM DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3'), 10 mM sodium phosphate, 0.5 v/v DSS, 90% H2O/10% D2O ; '90% H2O/10% D2O' NN4tC_2 solution ? 2 ;500 uM DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3'), 10 mM sodium phosphate, 0.5 v/v DSS, 100% D2O ; '100% D2O' NN4tC_2_D20 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3') ; 500 ? uM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 DSS 0.5 ? v/v 'natural abundance' 2 ;DNA (5'-D(*CP*(YCO)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*(DNR)P*GP*T)-3') ; 500 ? uM 'natural abundance' 2 'sodium phosphate' 10 ? mM 'natural abundance' 2 DSS 0.5 ? v/v 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 atm 1 7 10 ? ? mM T278 ? pH ? ? K 2 298 atm 1 7 10 ? ? mM T298 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 2 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 2 '2D 1H-1H TOCSY' 1 isotropic 4 1 1 '2D 1H-1H NOESY' 1 isotropic 5 2 1 '2D 1H-1H NOESY' 1 isotropic 6 1 2 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 8OFC _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'chemical shift assignment' Sparky ? Goddard 4 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DNR P P N N 72 DNR OP1 O N N 73 DNR OP2 O N N 74 DNR "O5'" O N N 75 DNR "C5'" C N N 76 DNR "C4'" C N R 77 DNR "O4'" O N N 78 DNR "C1'" C N R 79 DNR N1 N N N 80 DNR C6 C N N 81 DNR C2 C N N 82 DNR O2 O N N 83 DNR N3 N N N 84 DNR C4 C N N 85 DNR N4 N N N 86 DNR C5 C N N 87 DNR "C2'" C N N 88 DNR "C3'" C N S 89 DNR "O3'" O N N 90 DNR OP3 O N N 91 DNR HOP2 H N N 92 DNR "H5'" H N N 93 DNR "H5''" H N N 94 DNR "H4'" H N N 95 DNR "H1'" H N N 96 DNR H6 H N N 97 DNR HN3 H N N 98 DNR H41 H N N 99 DNR H42 H N N 100 DNR H5 H N N 101 DNR "H2'" H N N 102 DNR "H2''" H N N 103 DNR "H3'" H N N 104 DNR "HO3'" H N N 105 DNR HOP3 H N N 106 DT OP3 O N N 107 DT P P N N 108 DT OP1 O N N 109 DT OP2 O N N 110 DT "O5'" O N N 111 DT "C5'" C N N 112 DT "C4'" C N R 113 DT "O4'" O N N 114 DT "C3'" C N S 115 DT "O3'" O N N 116 DT "C2'" C N N 117 DT "C1'" C N R 118 DT N1 N N N 119 DT C2 C N N 120 DT O2 O N N 121 DT N3 N N N 122 DT C4 C N N 123 DT O4 O N N 124 DT C5 C N N 125 DT C7 C N N 126 DT C6 C N N 127 DT HOP3 H N N 128 DT HOP2 H N N 129 DT "H5'" H N N 130 DT "H5''" H N N 131 DT "H4'" H N N 132 DT "H3'" H N N 133 DT "HO3'" H N N 134 DT "H2'" H N N 135 DT "H2''" H N N 136 DT "H1'" H N N 137 DT H3 H N N 138 DT H71 H N N 139 DT H72 H N N 140 DT H73 H N N 141 DT H6 H N N 142 YCO P P N N 143 YCO N1 N N N 144 YCO C2 C N N 145 YCO O2 O N N 146 YCO N3 N N N 147 YCO C4 C N N 148 YCO C5 C N N 149 YCO C6 C N N 150 YCO N7 N N N 151 YCO C8 C Y N 152 YCO C9 C Y N 153 YCO "C1'" C N R 154 YCO C10 C Y N 155 YCO C11 C Y N 156 YCO C12 C Y N 157 YCO C13 C Y N 158 YCO O14 O N N 159 YCO "C2'" C N N 160 YCO "C3'" C N S 161 YCO "O3'" O N N 162 YCO "C4'" C N R 163 YCO "O4'" O N N 164 YCO "C5'" C N N 165 YCO "O5'" O N N 166 YCO OP1 O N N 167 YCO OP2 O N N 168 YCO OP3 O N N 169 YCO HN3 H N N 170 YCO H6 H N N 171 YCO H9 H N N 172 YCO "H1'" H N N 173 YCO H10 H N N 174 YCO H11 H N N 175 YCO H12 H N N 176 YCO "H2'" H N N 177 YCO "H2'A" H N N 178 YCO "H3'" H N N 179 YCO "HO3'" H N N 180 YCO "H4'" H N N 181 YCO "H5'" H N N 182 YCO "H5'A" H N N 183 YCO HOP2 H N N 184 YCO HOP3 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DNR P OP1 doub N N 75 DNR P OP2 sing N N 76 DNR P "O5'" sing N N 77 DNR P OP3 sing N N 78 DNR OP2 HOP2 sing N N 79 DNR "O5'" "C5'" sing N N 80 DNR "C5'" "C4'" sing N N 81 DNR "C5'" "H5'" sing N N 82 DNR "C5'" "H5''" sing N N 83 DNR "C4'" "O4'" sing N N 84 DNR "C4'" "C3'" sing N N 85 DNR "C4'" "H4'" sing N N 86 DNR "O4'" "C1'" sing N N 87 DNR "C1'" N1 sing N N 88 DNR "C1'" "C2'" sing N N 89 DNR "C1'" "H1'" sing N N 90 DNR N1 C6 sing N N 91 DNR N1 C2 sing N N 92 DNR C6 C5 doub N N 93 DNR C6 H6 sing N N 94 DNR C2 O2 doub N N 95 DNR C2 N3 sing N N 96 DNR N3 C4 doub N N 97 DNR N3 HN3 sing N N 98 DNR C4 N4 sing N N 99 DNR C4 C5 sing N N 100 DNR N4 H41 sing N N 101 DNR N4 H42 sing N N 102 DNR C5 H5 sing N N 103 DNR "C2'" "C3'" sing N N 104 DNR "C2'" "H2'" sing N N 105 DNR "C2'" "H2''" sing N N 106 DNR "C3'" "O3'" sing N N 107 DNR "C3'" "H3'" sing N N 108 DNR "O3'" "HO3'" sing N N 109 DNR OP3 HOP3 sing N N 110 DT OP3 P sing N N 111 DT OP3 HOP3 sing N N 112 DT P OP1 doub N N 113 DT P OP2 sing N N 114 DT P "O5'" sing N N 115 DT OP2 HOP2 sing N N 116 DT "O5'" "C5'" sing N N 117 DT "C5'" "C4'" sing N N 118 DT "C5'" "H5'" sing N N 119 DT "C5'" "H5''" sing N N 120 DT "C4'" "O4'" sing N N 121 DT "C4'" "C3'" sing N N 122 DT "C4'" "H4'" sing N N 123 DT "O4'" "C1'" sing N N 124 DT "C3'" "O3'" sing N N 125 DT "C3'" "C2'" sing N N 126 DT "C3'" "H3'" sing N N 127 DT "O3'" "HO3'" sing N N 128 DT "C2'" "C1'" sing N N 129 DT "C2'" "H2'" sing N N 130 DT "C2'" "H2''" sing N N 131 DT "C1'" N1 sing N N 132 DT "C1'" "H1'" sing N N 133 DT N1 C2 sing N N 134 DT N1 C6 sing N N 135 DT C2 O2 doub N N 136 DT C2 N3 sing N N 137 DT N3 C4 sing N N 138 DT N3 H3 sing N N 139 DT C4 O4 doub N N 140 DT C4 C5 sing N N 141 DT C5 C7 sing N N 142 DT C5 C6 doub N N 143 DT C7 H71 sing N N 144 DT C7 H72 sing N N 145 DT C7 H73 sing N N 146 DT C6 H6 sing N N 147 YCO P OP2 sing N N 148 YCO P OP3 sing N N 149 YCO N1 "C1'" sing N N 150 YCO N1 C6 sing N N 151 YCO C2 N1 sing N N 152 YCO O2 C2 doub N N 153 YCO N3 C2 sing N N 154 YCO N3 C4 sing N N 155 YCO N3 HN3 sing N N 156 YCO C4 C5 sing N N 157 YCO C5 C6 doub N N 158 YCO C5 O14 sing N N 159 YCO C6 H6 sing N N 160 YCO N7 C4 doub N N 161 YCO N7 C8 sing N N 162 YCO C8 C13 sing Y N 163 YCO C9 C8 doub Y N 164 YCO C9 C10 sing Y N 165 YCO C9 H9 sing N N 166 YCO "C1'" "C2'" sing N N 167 YCO "C1'" "O4'" sing N N 168 YCO "C1'" "H1'" sing N N 169 YCO C10 C11 doub Y N 170 YCO C10 H10 sing N N 171 YCO C11 C12 sing Y N 172 YCO C11 H11 sing N N 173 YCO C12 H12 sing N N 174 YCO C13 C12 doub Y N 175 YCO C13 O14 sing N N 176 YCO "C2'" "C3'" sing N N 177 YCO "C2'" "H2'" sing N N 178 YCO "C2'" "H2'A" sing N N 179 YCO "C3'" "O3'" sing N N 180 YCO "C3'" "C4'" sing N N 181 YCO "C3'" "H3'" sing N N 182 YCO "O3'" "HO3'" sing N N 183 YCO "C4'" "C5'" sing N N 184 YCO "C4'" "H4'" sing N N 185 YCO "O4'" "C4'" sing N N 186 YCO "C5'" "O5'" sing N N 187 YCO "C5'" "H5'" sing N N 188 YCO "C5'" "H5'A" sing N N 189 YCO "O5'" P sing N N 190 YCO OP1 P doub N N 191 YCO OP2 HOP2 sing N N 192 YCO OP3 HOP3 sing N N 193 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8OFC 'double helix' 8OFC 'parallel strands' 8OFC 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 16 1_555 0.976 -0.513 0.419 15.641 1.601 -7.067 1 A_DC1:DG16_A A 1 ? A 16 ? 19 1 1 A DNR 7 1_555 A DC 15 1_555 1.987 1.477 0.149 0.499 -0.053 179.354 2 A_DNR7:DC15_A A 7 ? A 15 ? 15 2 1 A YCO 2 1_555 A DNR 20 1_555 -1.919 -1.243 -0.132 -3.089 1.957 -177.579 3 A_YCO2:DNR20_A A 2 ? A 20 ? ? 2 1 A DC 6 1_555 A DG 21 1_555 0.433 -0.265 0.549 -3.331 17.740 0.683 4 A_DC6:DG21_A A 6 ? A 21 ? 19 1 1 A DG 3 1_555 A DC 14 1_555 -0.763 -0.400 -0.108 9.323 19.790 -1.173 5 A_DG3:DC14_A A 3 ? A 14 ? 19 1 1 A DG 8 1_555 A DC 19 1_555 -0.734 -0.305 0.005 -3.089 -8.251 0.107 6 A_DG8:DC19_A A 8 ? A 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 16 1_555 A DNR 7 1_555 A DC 15 1_555 -3.919 4.015 3.067 155.494 -31.350 -22.656 -1.367 1.354 5.154 17.368 86.143 -159.044 1 AA_DC1DNR7:DC15DG16_AA A 1 ? A 16 ? A 7 ? A 15 ? 1 A DNR 7 1_555 A DC 15 1_555 A YCO 2 1_555 A DNR 20 1_555 -3.020 -1.528 -0.334 97.816 -140.554 -145.508 0.732 -1.532 -0.180 70.438 49.020 -177.405 2 AA_DNR7YCO2:DNR20DC15_AA A 7 ? A 15 ? A 2 ? A 20 ? 1 A YCO 2 1_555 A DNR 20 1_555 A DC 6 1_555 A DG 21 1_555 3.769 5.341 -0.797 -28.760 -158.931 151.552 2.490 -1.853 -2.211 -79.740 14.429 175.476 3 AA_YCO2DC6:DG21DNR20_AA A 2 ? A 20 ? A 6 ? A 21 ? # _pdbx_audit_support.funding_organization 'Spanish Ministry of Science, Innovation, and Universities' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8OFC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #