HEADER PROTEIN BINDING 20-MAR-23 8OH7 TITLE STRUCTURE OF A4M4C BOUND TO (KR)4 SOLUTION BACKBONE STRUCTURE REFINED TITLE 2 BY PCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED ARMADILLO REPEAT PROTEIN WITH FOUR INTERNAL COMPND 3 MODULES; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FOR STRUCTURE DETERMINATION, THE PROTEIN WAS TAGGED COMPND 7 VIA 3 DIFFERENT CYS MUTANTS AT POSITIONS CYS18 (M2), CYS-21 (C) AND COMPND 8 CYS-15 (N) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURE FROM CYANA 3.98.15, ARMADILLO REPEAT PROTEIN BINDING KEYWDS 2 PROTEIN BINDING (KR)4 PEPTIDE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR S.CUCUZZA,O.ZERBE REVDAT 1 13-DEC-23 8OH7 0 JRNL AUTH S.CUCUZZA,M.SITNIK,S.JURT,E.MICHEL,W.DAI,T.MUNTENER,P.ERNST, JRNL AUTH 2 D.HAUSSINGER,A.PLUCKTHUN,O.ZERBE JRNL TITL UNEXPECTED DYNAMICS IN FEMTOMOLAR COMPLEXES OF BINDING JRNL TITL 2 PROTEINS WITH PEPTIDES. JRNL REF NAT COMMUN V. 14 7823 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38016954 JRNL DOI 10.1038/S41467-023-43596-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.18.4 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO REFINEMENT REMARK 4 REMARK 4 8OH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129217. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 150 UM [U-100% 15N] A4M4C, 20 MM REMARK 210 NA2HPO4, 0.2 MM TCEP, 90% H2O/10% REMARK 210 D2O; 150 UM [U-100% 15N] A4M4C, REMARK 210 20 MM NA2HPO4, 0.2 MM TCEP, 90% REMARK 210 H2O/10% D2O; 150 UM [U-100% 15N] REMARK 210 A4M4C, 20 MM NA2HPO4, 0.2 MM REMARK 210 TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4, CARA REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 4 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 30 35.52 -93.68 REMARK 500 1 SER A 53 52.00 -96.74 REMARK 500 1 SER A 72 33.64 -92.40 REMARK 500 1 PRO A 88 2.76 -69.80 REMARK 500 1 SER A 95 57.03 -96.44 REMARK 500 1 SER A 137 61.63 -101.91 REMARK 500 1 ASN A 140 98.28 -67.73 REMARK 500 1 ALA A 155 37.45 -99.45 REMARK 500 1 ALA A 197 32.98 -92.98 REMARK 500 1 ALA A 210 -76.19 -54.63 REMARK 500 1 SER A 221 43.07 -107.14 REMARK 500 2 SER A 12 -147.02 -161.49 REMARK 500 2 SER A 13 172.10 81.55 REMARK 500 2 ASN A 14 160.99 -48.44 REMARK 500 2 ARG A 23 -41.82 -144.02 REMARK 500 2 SER A 30 43.47 -92.04 REMARK 500 2 ILE A 40 -75.10 -55.31 REMARK 500 2 SER A 53 55.69 -109.33 REMARK 500 2 SER A 72 36.86 -92.22 REMARK 500 2 SER A 95 60.55 -109.39 REMARK 500 2 SER A 137 56.89 -113.33 REMARK 500 2 ALA A 155 79.40 -107.41 REMARK 500 2 SER A 156 -41.76 -141.24 REMARK 500 3 LEU A 3 -60.88 -90.91 REMARK 500 3 LEU A 10 -73.49 -18.83 REMARK 500 3 LYS A 11 -86.33 -48.73 REMARK 500 3 SER A 12 -162.30 45.66 REMARK 500 3 SER A 13 -41.99 -143.16 REMARK 500 3 SER A 30 38.51 -93.24 REMARK 500 3 ILE A 40 -72.46 -51.19 REMARK 500 3 SER A 72 31.34 -92.37 REMARK 500 3 PRO A 88 2.40 -69.73 REMARK 500 3 SER A 95 65.63 -108.12 REMARK 500 3 VAL A 123 44.78 -91.05 REMARK 500 3 ILE A 124 -41.54 -141.24 REMARK 500 3 ALA A 128 -35.22 -176.11 REMARK 500 3 SER A 137 72.97 -103.72 REMARK 500 3 GLU A 141 -63.50 -104.53 REMARK 500 3 SER A 156 83.79 -69.84 REMARK 500 3 SER A 221 46.47 -108.12 REMARK 500 4 SER A 12 137.46 81.56 REMARK 500 4 SER A 13 -35.71 -175.64 REMARK 500 4 ALA A 24 -73.58 -55.92 REMARK 500 4 ALA A 44 -35.12 -134.21 REMARK 500 4 SER A 53 67.19 -104.00 REMARK 500 4 SER A 72 35.11 -92.13 REMARK 500 4 ASP A 83 31.11 -93.99 REMARK 500 4 PRO A 88 1.90 -69.77 REMARK 500 4 SER A 95 69.27 -111.16 REMARK 500 4 VAL A 123 45.39 -90.43 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7R0R RELATED DB: PDB REMARK 900 STRUCUTRE OF THE UNLIGANDED A4M4C REMARK 900 RELATED ID: 34799 RELATED DB: BMRB REMARK 900 STRUCTURE OF A4M4C BOUND TO (KR)4 SOLUTION BACKBONE STRUCTURE REMARK 900 REFINED BY PCS DBREF 8OH7 A 1 239 PDB 8OH7 8OH7 1 239 SEQRES 1 A 239 PRO ASP LEU PRO LYS LEU VAL LYS LEU LEU LYS SER SER SEQRES 2 A 239 ASN GLU GLU ILE LEU LEU LYS ALA LEU ARG ALA LEU ALA SEQRES 3 A 239 GLU ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL SEQRES 4 A 239 ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SEQRES 5 A 239 SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP SEQRES 6 A 239 ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE SEQRES 7 A 239 GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL SEQRES 8 A 239 GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU SEQRES 9 A 239 ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN SEQRES 10 A 239 GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO SEQRES 11 A 239 ALA LEU VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE SEQRES 12 A 239 LEU GLN GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER SEQRES 13 A 239 GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY SEQRES 14 A 239 ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER PRO ASN SEQRES 15 A 239 GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SER ASN SEQRES 16 A 239 ILE ALA SER GLY GLY ASN GLU GLN LYS GLN ALA VAL LYS SEQRES 17 A 239 GLU ALA GLY ALA LEU GLU LYS LEU GLU GLN LEU GLN SER SEQRES 18 A 239 HIS GLU ASN GLU LYS ILE GLN LYS GLU ALA GLN GLU ALA SEQRES 19 A 239 LEU GLU LYS LEU GLN HELIX 1 AA1 ASP A 2 SER A 12 1 11 HELIX 2 AA2 ASN A 14 SER A 30 1 17 HELIX 3 AA3 GLY A 32 GLY A 43 1 12 HELIX 4 AA4 ALA A 44 SER A 53 1 10 HELIX 5 AA5 ASN A 56 SER A 72 1 17 HELIX 6 AA6 GLY A 74 ASP A 83 1 10 HELIX 7 AA7 ALA A 86 SER A 95 1 10 HELIX 8 AA8 ASN A 98 SER A 114 1 17 HELIX 9 AA9 GLY A 116 GLY A 127 1 12 HELIX 10 AB1 ALA A 128 SER A 137 1 10 HELIX 11 AB2 ASN A 140 ALA A 155 1 16 HELIX 12 AB3 GLY A 158 GLY A 169 1 12 HELIX 13 AB4 GLY A 169 LEU A 178 1 10 HELIX 14 AB5 ASN A 182 ALA A 197 1 16 HELIX 15 AB6 GLY A 200 GLY A 211 1 12 HELIX 16 AB7 GLY A 211 GLN A 220 1 10 HELIX 17 AB8 ASN A 224 GLN A 239 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1