data_8OIU # _entry.id 8OIU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8OIU pdb_00008oiu 10.2210/pdb8oiu/pdb WWPDB D_1292128826 ? ? EMDB EMD-16900 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-31 2 'Structure model' 1 1 2024-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' em_3d_fitting_list 4 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 2 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8OIU _pdbx_database_status.recvd_initial_deposition_date 2023-03-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution ; _pdbx_database_related.db_id EMD-16900 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email panagiotis.kastritis@bct.uni-halle.de _pdbx_contact_author.name_first Panagiotis _pdbx_contact_author.name_last Kastritis _pdbx_contact_author.name_mi L. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1463-8422 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Skalidis, I.' 1 0000-0002-3077-9014 'Tueting, C.' 2 0000-0001-6209-4012 'Kyrilis, F.L.' 3 0000-0002-4040-6289 'Hamdi, F.' 4 0000-0002-2155-5000 'Kastritis, P.L.' 5 0000-0002-1463-8422 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 552 _citation.page_last 552 _citation.title 'Structural analysis of an endogenous 4-megadalton succinyl-CoA-generating metabolon.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-023-04885-0 _citation.pdbx_database_id_PubMed 37217784 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Skalidis, I.' 1 ? primary 'Kyrilis, F.L.' 2 0000-0002-4040-6289 primary 'Tuting, C.' 3 0000-0001-6209-4012 primary 'Hamdi, F.' 4 0000-0002-2155-5000 primary 'Trager, T.K.' 5 ? primary 'Belapure, J.' 6 ? primary 'Hause, G.' 7 ? primary 'Fratini, M.' 8 ? primary ;O'Reilly, F.J. ; 9 0000-0001-9258-0150 primary 'Heilmann, I.' 10 0000-0002-2324-1849 primary 'Rappsilber, J.' 11 0000-0001-5999-1310 primary 'Kastritis, P.L.' 12 0000-0002-1463-8422 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Dihydrolipoyllysine-residue succinyltransferase' _entity.formula_weight 45987.004 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.3.1.61 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLYRGLRMAARAAPKFAVLNTHAALRQLPLQFQHVRTYADKIIKVPQMAESITEGTLKQWNKAVGDYVEADEEIATIETD KIDVAVNAPEAGVIKEFFVNEEDTVLVGQDLVRLEVGGEKPAEAAKEQPKAAAPEPKVEEKKVPEAPAPEPSKTAAPAPA PPKQEAPASPKPASKPAETPAVTLGNREERRVKMNRMRLRIAERLKQSQNTAASLTTFNEVDMSALIEFRNKYKDEVLKK TGVKLGFMSAFSRAVVLAIRDLPVVNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLITIEKTIAELG KKARDGKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQSAVLGLHAIKERPVAVNGKVEIRPMMYLALTYDHRLLDGRE AVQFLVKVKEYIEDPRKMLL ; _entity_poly.pdbx_seq_one_letter_code_can ;MLYRGLRMAARAAPKFAVLNTHAALRQLPLQFQHVRTYADKIIKVPQMAESITEGTLKQWNKAVGDYVEADEEIATIETD KIDVAVNAPEAGVIKEFFVNEEDTVLVGQDLVRLEVGGEKPAEAAKEQPKAAAPEPKVEEKKVPEAPAPEPSKTAAPAPA PPKQEAPASPKPASKPAETPAVTLGNREERRVKMNRMRLRIAERLKQSQNTAASLTTFNEVDMSALIEFRNKYKDEVLKK TGVKLGFMSAFSRAVVLAIRDLPVVNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLITIEKTIAELG KKARDGKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQSAVLGLHAIKERPVAVNGKVEIRPMMYLALTYDHRLLDGRE AVQFLVKVKEYIEDPRKMLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 TYR n 1 4 ARG n 1 5 GLY n 1 6 LEU n 1 7 ARG n 1 8 MET n 1 9 ALA n 1 10 ALA n 1 11 ARG n 1 12 ALA n 1 13 ALA n 1 14 PRO n 1 15 LYS n 1 16 PHE n 1 17 ALA n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 THR n 1 22 HIS n 1 23 ALA n 1 24 ALA n 1 25 LEU n 1 26 ARG n 1 27 GLN n 1 28 LEU n 1 29 PRO n 1 30 LEU n 1 31 GLN n 1 32 PHE n 1 33 GLN n 1 34 HIS n 1 35 VAL n 1 36 ARG n 1 37 THR n 1 38 TYR n 1 39 ALA n 1 40 ASP n 1 41 LYS n 1 42 ILE n 1 43 ILE n 1 44 LYS n 1 45 VAL n 1 46 PRO n 1 47 GLN n 1 48 MET n 1 49 ALA n 1 50 GLU n 1 51 SER n 1 52 ILE n 1 53 THR n 1 54 GLU n 1 55 GLY n 1 56 THR n 1 57 LEU n 1 58 LYS n 1 59 GLN n 1 60 TRP n 1 61 ASN n 1 62 LYS n 1 63 ALA n 1 64 VAL n 1 65 GLY n 1 66 ASP n 1 67 TYR n 1 68 VAL n 1 69 GLU n 1 70 ALA n 1 71 ASP n 1 72 GLU n 1 73 GLU n 1 74 ILE n 1 75 ALA n 1 76 THR n 1 77 ILE n 1 78 GLU n 1 79 THR n 1 80 ASP n 1 81 LYS n 1 82 ILE n 1 83 ASP n 1 84 VAL n 1 85 ALA n 1 86 VAL n 1 87 ASN n 1 88 ALA n 1 89 PRO n 1 90 GLU n 1 91 ALA n 1 92 GLY n 1 93 VAL n 1 94 ILE n 1 95 LYS n 1 96 GLU n 1 97 PHE n 1 98 PHE n 1 99 VAL n 1 100 ASN n 1 101 GLU n 1 102 GLU n 1 103 ASP n 1 104 THR n 1 105 VAL n 1 106 LEU n 1 107 VAL n 1 108 GLY n 1 109 GLN n 1 110 ASP n 1 111 LEU n 1 112 VAL n 1 113 ARG n 1 114 LEU n 1 115 GLU n 1 116 VAL n 1 117 GLY n 1 118 GLY n 1 119 GLU n 1 120 LYS n 1 121 PRO n 1 122 ALA n 1 123 GLU n 1 124 ALA n 1 125 ALA n 1 126 LYS n 1 127 GLU n 1 128 GLN n 1 129 PRO n 1 130 LYS n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 PRO n 1 135 GLU n 1 136 PRO n 1 137 LYS n 1 138 VAL n 1 139 GLU n 1 140 GLU n 1 141 LYS n 1 142 LYS n 1 143 VAL n 1 144 PRO n 1 145 GLU n 1 146 ALA n 1 147 PRO n 1 148 ALA n 1 149 PRO n 1 150 GLU n 1 151 PRO n 1 152 SER n 1 153 LYS n 1 154 THR n 1 155 ALA n 1 156 ALA n 1 157 PRO n 1 158 ALA n 1 159 PRO n 1 160 ALA n 1 161 PRO n 1 162 PRO n 1 163 LYS n 1 164 GLN n 1 165 GLU n 1 166 ALA n 1 167 PRO n 1 168 ALA n 1 169 SER n 1 170 PRO n 1 171 LYS n 1 172 PRO n 1 173 ALA n 1 174 SER n 1 175 LYS n 1 176 PRO n 1 177 ALA n 1 178 GLU n 1 179 THR n 1 180 PRO n 1 181 ALA n 1 182 VAL n 1 183 THR n 1 184 LEU n 1 185 GLY n 1 186 ASN n 1 187 ARG n 1 188 GLU n 1 189 GLU n 1 190 ARG n 1 191 ARG n 1 192 VAL n 1 193 LYS n 1 194 MET n 1 195 ASN n 1 196 ARG n 1 197 MET n 1 198 ARG n 1 199 LEU n 1 200 ARG n 1 201 ILE n 1 202 ALA n 1 203 GLU n 1 204 ARG n 1 205 LEU n 1 206 LYS n 1 207 GLN n 1 208 SER n 1 209 GLN n 1 210 ASN n 1 211 THR n 1 212 ALA n 1 213 ALA n 1 214 SER n 1 215 LEU n 1 216 THR n 1 217 THR n 1 218 PHE n 1 219 ASN n 1 220 GLU n 1 221 VAL n 1 222 ASP n 1 223 MET n 1 224 SER n 1 225 ALA n 1 226 LEU n 1 227 ILE n 1 228 GLU n 1 229 PHE n 1 230 ARG n 1 231 ASN n 1 232 LYS n 1 233 TYR n 1 234 LYS n 1 235 ASP n 1 236 GLU n 1 237 VAL n 1 238 LEU n 1 239 LYS n 1 240 LYS n 1 241 THR n 1 242 GLY n 1 243 VAL n 1 244 LYS n 1 245 LEU n 1 246 GLY n 1 247 PHE n 1 248 MET n 1 249 SER n 1 250 ALA n 1 251 PHE n 1 252 SER n 1 253 ARG n 1 254 ALA n 1 255 VAL n 1 256 VAL n 1 257 LEU n 1 258 ALA n 1 259 ILE n 1 260 ARG n 1 261 ASP n 1 262 LEU n 1 263 PRO n 1 264 VAL n 1 265 VAL n 1 266 ASN n 1 267 ALA n 1 268 SER n 1 269 ILE n 1 270 GLU n 1 271 GLY n 1 272 PRO n 1 273 ASN n 1 274 GLY n 1 275 GLY n 1 276 ASP n 1 277 THR n 1 278 ILE n 1 279 VAL n 1 280 TYR n 1 281 ARG n 1 282 ASP n 1 283 TYR n 1 284 VAL n 1 285 ASP n 1 286 ILE n 1 287 SER n 1 288 VAL n 1 289 ALA n 1 290 VAL n 1 291 ALA n 1 292 THR n 1 293 GLU n 1 294 LYS n 1 295 GLY n 1 296 LEU n 1 297 VAL n 1 298 THR n 1 299 PRO n 1 300 VAL n 1 301 VAL n 1 302 ARG n 1 303 ASN n 1 304 ALA n 1 305 GLU n 1 306 THR n 1 307 MET n 1 308 ASP n 1 309 LEU n 1 310 ILE n 1 311 THR n 1 312 ILE n 1 313 GLU n 1 314 LYS n 1 315 THR n 1 316 ILE n 1 317 ALA n 1 318 GLU n 1 319 LEU n 1 320 GLY n 1 321 LYS n 1 322 LYS n 1 323 ALA n 1 324 ARG n 1 325 ASP n 1 326 GLY n 1 327 LYS n 1 328 LEU n 1 329 THR n 1 330 ILE n 1 331 GLU n 1 332 ASP n 1 333 MET n 1 334 ALA n 1 335 GLY n 1 336 GLY n 1 337 THR n 1 338 PHE n 1 339 THR n 1 340 ILE n 1 341 SER n 1 342 ASN n 1 343 GLY n 1 344 GLY n 1 345 VAL n 1 346 PHE n 1 347 GLY n 1 348 SER n 1 349 LEU n 1 350 MET n 1 351 GLY n 1 352 THR n 1 353 PRO n 1 354 ILE n 1 355 ILE n 1 356 ASN n 1 357 LEU n 1 358 PRO n 1 359 GLN n 1 360 SER n 1 361 ALA n 1 362 VAL n 1 363 LEU n 1 364 GLY n 1 365 LEU n 1 366 HIS n 1 367 ALA n 1 368 ILE n 1 369 LYS n 1 370 GLU n 1 371 ARG n 1 372 PRO n 1 373 VAL n 1 374 ALA n 1 375 VAL n 1 376 ASN n 1 377 GLY n 1 378 LYS n 1 379 VAL n 1 380 GLU n 1 381 ILE n 1 382 ARG n 1 383 PRO n 1 384 MET n 1 385 MET n 1 386 TYR n 1 387 LEU n 1 388 ALA n 1 389 LEU n 1 390 THR n 1 391 TYR n 1 392 ASP n 1 393 HIS n 1 394 ARG n 1 395 LEU n 1 396 LEU n 1 397 ASP n 1 398 GLY n 1 399 ARG n 1 400 GLU n 1 401 ALA n 1 402 VAL n 1 403 GLN n 1 404 PHE n 1 405 LEU n 1 406 VAL n 1 407 LYS n 1 408 VAL n 1 409 LYS n 1 410 GLU n 1 411 TYR n 1 412 ILE n 1 413 GLU n 1 414 ASP n 1 415 PRO n 1 416 ARG n 1 417 LYS n 1 418 MET n 1 419 LEU n 1 420 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 420 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Thermochaetoides thermophila DSM 1495' _entity_src_nat.pdbx_ncbi_taxonomy_id 759272 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LEU 2 2 ? ? ? A . n A 1 3 TYR 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 ARG 7 7 ? ? ? A . n A 1 8 MET 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 ALA 10 10 ? ? ? A . n A 1 11 ARG 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 PRO 14 14 ? ? ? A . n A 1 15 LYS 15 15 ? ? ? A . n A 1 16 PHE 16 16 ? ? ? A . n A 1 17 ALA 17 17 ? ? ? A . n A 1 18 VAL 18 18 ? ? ? A . n A 1 19 LEU 19 19 ? ? ? A . n A 1 20 ASN 20 20 ? ? ? A . n A 1 21 THR 21 21 ? ? ? A . n A 1 22 HIS 22 22 ? ? ? A . n A 1 23 ALA 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 LEU 25 25 ? ? ? A . n A 1 26 ARG 26 26 ? ? ? A . n A 1 27 GLN 27 27 ? ? ? A . n A 1 28 LEU 28 28 ? ? ? A . n A 1 29 PRO 29 29 ? ? ? A . n A 1 30 LEU 30 30 ? ? ? A . n A 1 31 GLN 31 31 ? ? ? A . n A 1 32 PHE 32 32 ? ? ? A . n A 1 33 GLN 33 33 ? ? ? A . n A 1 34 HIS 34 34 ? ? ? A . n A 1 35 VAL 35 35 ? ? ? A . n A 1 36 ARG 36 36 ? ? ? A . n A 1 37 THR 37 37 ? ? ? A . n A 1 38 TYR 38 38 ? ? ? A . n A 1 39 ALA 39 39 ? ? ? A . n A 1 40 ASP 40 40 ? ? ? A . n A 1 41 LYS 41 41 ? ? ? A . n A 1 42 ILE 42 42 ? ? ? A . n A 1 43 ILE 43 43 ? ? ? A . n A 1 44 LYS 44 44 ? ? ? A . n A 1 45 VAL 45 45 ? ? ? A . n A 1 46 PRO 46 46 ? ? ? A . n A 1 47 GLN 47 47 ? ? ? A . n A 1 48 MET 48 48 ? ? ? A . n A 1 49 ALA 49 49 ? ? ? A . n A 1 50 GLU 50 50 ? ? ? A . n A 1 51 SER 51 51 ? ? ? A . n A 1 52 ILE 52 52 ? ? ? A . n A 1 53 THR 53 53 ? ? ? A . n A 1 54 GLU 54 54 ? ? ? A . n A 1 55 GLY 55 55 ? ? ? A . n A 1 56 THR 56 56 ? ? ? A . n A 1 57 LEU 57 57 ? ? ? A . n A 1 58 LYS 58 58 ? ? ? A . n A 1 59 GLN 59 59 ? ? ? A . n A 1 60 TRP 60 60 ? ? ? A . n A 1 61 ASN 61 61 ? ? ? A . n A 1 62 LYS 62 62 ? ? ? A . n A 1 63 ALA 63 63 ? ? ? A . n A 1 64 VAL 64 64 ? ? ? A . n A 1 65 GLY 65 65 ? ? ? A . n A 1 66 ASP 66 66 ? ? ? A . n A 1 67 TYR 67 67 ? ? ? A . n A 1 68 VAL 68 68 ? ? ? A . n A 1 69 GLU 69 69 ? ? ? A . n A 1 70 ALA 70 70 ? ? ? A . n A 1 71 ASP 71 71 ? ? ? A . n A 1 72 GLU 72 72 ? ? ? A . n A 1 73 GLU 73 73 ? ? ? A . n A 1 74 ILE 74 74 ? ? ? A . n A 1 75 ALA 75 75 ? ? ? A . n A 1 76 THR 76 76 ? ? ? A . n A 1 77 ILE 77 77 ? ? ? A . n A 1 78 GLU 78 78 ? ? ? A . n A 1 79 THR 79 79 ? ? ? A . n A 1 80 ASP 80 80 ? ? ? A . n A 1 81 LYS 81 81 ? ? ? A . n A 1 82 ILE 82 82 ? ? ? A . n A 1 83 ASP 83 83 ? ? ? A . n A 1 84 VAL 84 84 ? ? ? A . n A 1 85 ALA 85 85 ? ? ? A . n A 1 86 VAL 86 86 ? ? ? A . n A 1 87 ASN 87 87 ? ? ? A . n A 1 88 ALA 88 88 ? ? ? A . n A 1 89 PRO 89 89 ? ? ? A . n A 1 90 GLU 90 90 ? ? ? A . n A 1 91 ALA 91 91 ? ? ? A . n A 1 92 GLY 92 92 ? ? ? A . n A 1 93 VAL 93 93 ? ? ? A . n A 1 94 ILE 94 94 ? ? ? A . n A 1 95 LYS 95 95 ? ? ? A . n A 1 96 GLU 96 96 ? ? ? A . n A 1 97 PHE 97 97 ? ? ? A . n A 1 98 PHE 98 98 ? ? ? A . n A 1 99 VAL 99 99 ? ? ? A . n A 1 100 ASN 100 100 ? ? ? A . n A 1 101 GLU 101 101 ? ? ? A . n A 1 102 GLU 102 102 ? ? ? A . n A 1 103 ASP 103 103 ? ? ? A . n A 1 104 THR 104 104 ? ? ? A . n A 1 105 VAL 105 105 ? ? ? A . n A 1 106 LEU 106 106 ? ? ? A . n A 1 107 VAL 107 107 ? ? ? A . n A 1 108 GLY 108 108 ? ? ? A . n A 1 109 GLN 109 109 ? ? ? A . n A 1 110 ASP 110 110 ? ? ? A . n A 1 111 LEU 111 111 ? ? ? A . n A 1 112 VAL 112 112 ? ? ? A . n A 1 113 ARG 113 113 ? ? ? A . n A 1 114 LEU 114 114 ? ? ? A . n A 1 115 GLU 115 115 ? ? ? A . n A 1 116 VAL 116 116 ? ? ? A . n A 1 117 GLY 117 117 ? ? ? A . n A 1 118 GLY 118 118 ? ? ? A . n A 1 119 GLU 119 119 ? ? ? A . n A 1 120 LYS 120 120 ? ? ? A . n A 1 121 PRO 121 121 ? ? ? A . n A 1 122 ALA 122 122 ? ? ? A . n A 1 123 GLU 123 123 ? ? ? A . n A 1 124 ALA 124 124 ? ? ? A . n A 1 125 ALA 125 125 ? ? ? A . n A 1 126 LYS 126 126 ? ? ? A . n A 1 127 GLU 127 127 ? ? ? A . n A 1 128 GLN 128 128 ? ? ? A . n A 1 129 PRO 129 129 ? ? ? A . n A 1 130 LYS 130 130 ? ? ? A . n A 1 131 ALA 131 131 ? ? ? A . n A 1 132 ALA 132 132 ? ? ? A . n A 1 133 ALA 133 133 ? ? ? A . n A 1 134 PRO 134 134 ? ? ? A . n A 1 135 GLU 135 135 ? ? ? A . n A 1 136 PRO 136 136 ? ? ? A . n A 1 137 LYS 137 137 ? ? ? A . n A 1 138 VAL 138 138 ? ? ? A . n A 1 139 GLU 139 139 ? ? ? A . n A 1 140 GLU 140 140 ? ? ? A . n A 1 141 LYS 141 141 ? ? ? A . n A 1 142 LYS 142 142 ? ? ? A . n A 1 143 VAL 143 143 ? ? ? A . n A 1 144 PRO 144 144 ? ? ? A . n A 1 145 GLU 145 145 ? ? ? A . n A 1 146 ALA 146 146 ? ? ? A . n A 1 147 PRO 147 147 ? ? ? A . n A 1 148 ALA 148 148 ? ? ? A . n A 1 149 PRO 149 149 ? ? ? A . n A 1 150 GLU 150 150 ? ? ? A . n A 1 151 PRO 151 151 ? ? ? A . n A 1 152 SER 152 152 ? ? ? A . n A 1 153 LYS 153 153 ? ? ? A . n A 1 154 THR 154 154 ? ? ? A . n A 1 155 ALA 155 155 ? ? ? A . n A 1 156 ALA 156 156 ? ? ? A . n A 1 157 PRO 157 157 ? ? ? A . n A 1 158 ALA 158 158 ? ? ? A . n A 1 159 PRO 159 159 ? ? ? A . n A 1 160 ALA 160 160 ? ? ? A . n A 1 161 PRO 161 161 ? ? ? A . n A 1 162 PRO 162 162 ? ? ? A . n A 1 163 LYS 163 163 ? ? ? A . n A 1 164 GLN 164 164 ? ? ? A . n A 1 165 GLU 165 165 ? ? ? A . n A 1 166 ALA 166 166 ? ? ? A . n A 1 167 PRO 167 167 ? ? ? A . n A 1 168 ALA 168 168 ? ? ? A . n A 1 169 SER 169 169 ? ? ? A . n A 1 170 PRO 170 170 ? ? ? A . n A 1 171 LYS 171 171 ? ? ? A . n A 1 172 PRO 172 172 ? ? ? A . n A 1 173 ALA 173 173 ? ? ? A . n A 1 174 SER 174 174 ? ? ? A . n A 1 175 LYS 175 175 ? ? ? A . n A 1 176 PRO 176 176 ? ? ? A . n A 1 177 ALA 177 177 ? ? ? A . n A 1 178 GLU 178 178 ? ? ? A . n A 1 179 THR 179 179 ? ? ? A . n A 1 180 PRO 180 180 ? ? ? A . n A 1 181 ALA 181 181 ? ? ? A . n A 1 182 VAL 182 182 ? ? ? A . n A 1 183 THR 183 183 ? ? ? A . n A 1 184 LEU 184 184 ? ? ? A . n A 1 185 GLY 185 185 ? ? ? A . n A 1 186 ASN 186 186 ? ? ? A . n A 1 187 ARG 187 187 ? ? ? A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 MET 194 194 194 MET MET A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 MET 197 197 197 MET MET A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 ARG 204 204 204 ARG ARG A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 GLN 207 207 207 GLN GLN A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 GLN 209 209 209 GLN GLN A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 THR 217 217 217 THR THR A . n A 1 218 PHE 218 218 218 PHE PHE A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 MET 223 223 223 MET MET A . n A 1 224 SER 224 224 224 SER SER A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 PHE 229 229 229 PHE PHE A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 THR 241 241 241 THR THR A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 PHE 247 247 247 PHE PHE A . n A 1 248 MET 248 248 248 MET MET A . n A 1 249 SER 249 249 249 SER SER A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 SER 252 252 252 SER SER A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 ASP 261 261 261 ASP ASP A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 VAL 264 264 264 VAL VAL A . n A 1 265 VAL 265 265 265 VAL VAL A . n A 1 266 ASN 266 266 266 ASN ASN A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 SER 268 268 268 SER SER A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 PRO 272 272 272 PRO PRO A . n A 1 273 ASN 273 273 273 ASN ASN A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 THR 277 277 277 THR THR A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 VAL 279 279 279 VAL VAL A . n A 1 280 TYR 280 280 280 TYR TYR A . n A 1 281 ARG 281 281 281 ARG ARG A . n A 1 282 ASP 282 282 282 ASP ASP A . n A 1 283 TYR 283 283 283 TYR TYR A . n A 1 284 VAL 284 284 284 VAL VAL A . n A 1 285 ASP 285 285 285 ASP ASP A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 SER 287 287 287 SER SER A . n A 1 288 VAL 288 288 288 VAL VAL A . n A 1 289 ALA 289 289 289 ALA ALA A . n A 1 290 VAL 290 290 290 VAL VAL A . n A 1 291 ALA 291 291 291 ALA ALA A . n A 1 292 THR 292 292 292 THR THR A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 LYS 294 294 294 LYS LYS A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 LEU 296 296 296 LEU LEU A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 THR 298 298 298 THR THR A . n A 1 299 PRO 299 299 299 PRO PRO A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 VAL 301 301 301 VAL VAL A . n A 1 302 ARG 302 302 302 ARG ARG A . n A 1 303 ASN 303 303 303 ASN ASN A . n A 1 304 ALA 304 304 304 ALA ALA A . n A 1 305 GLU 305 305 305 GLU GLU A . n A 1 306 THR 306 306 306 THR THR A . n A 1 307 MET 307 307 307 MET MET A . n A 1 308 ASP 308 308 308 ASP ASP A . n A 1 309 LEU 309 309 309 LEU LEU A . n A 1 310 ILE 310 310 310 ILE ILE A . n A 1 311 THR 311 311 311 THR THR A . n A 1 312 ILE 312 312 312 ILE ILE A . n A 1 313 GLU 313 313 313 GLU GLU A . n A 1 314 LYS 314 314 314 LYS LYS A . n A 1 315 THR 315 315 315 THR THR A . n A 1 316 ILE 316 316 316 ILE ILE A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLY 320 320 320 GLY GLY A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 LYS 322 322 322 LYS LYS A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 ARG 324 324 324 ARG ARG A . n A 1 325 ASP 325 325 325 ASP ASP A . n A 1 326 GLY 326 326 326 GLY GLY A . n A 1 327 LYS 327 327 327 LYS LYS A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 GLU 331 331 331 GLU GLU A . n A 1 332 ASP 332 332 332 ASP ASP A . n A 1 333 MET 333 333 333 MET MET A . n A 1 334 ALA 334 334 334 ALA ALA A . n A 1 335 GLY 335 335 335 GLY GLY A . n A 1 336 GLY 336 336 336 GLY GLY A . n A 1 337 THR 337 337 337 THR THR A . n A 1 338 PHE 338 338 338 PHE PHE A . n A 1 339 THR 339 339 339 THR THR A . n A 1 340 ILE 340 340 340 ILE ILE A . n A 1 341 SER 341 341 341 SER SER A . n A 1 342 ASN 342 342 342 ASN ASN A . n A 1 343 GLY 343 343 343 GLY GLY A . n A 1 344 GLY 344 344 344 GLY GLY A . n A 1 345 VAL 345 345 345 VAL VAL A . n A 1 346 PHE 346 346 346 PHE PHE A . n A 1 347 GLY 347 347 347 GLY GLY A . n A 1 348 SER 348 348 348 SER SER A . n A 1 349 LEU 349 349 349 LEU LEU A . n A 1 350 MET 350 350 350 MET MET A . n A 1 351 GLY 351 351 351 GLY GLY A . n A 1 352 THR 352 352 352 THR THR A . n A 1 353 PRO 353 353 353 PRO PRO A . n A 1 354 ILE 354 354 354 ILE ILE A . n A 1 355 ILE 355 355 355 ILE ILE A . n A 1 356 ASN 356 356 356 ASN ASN A . n A 1 357 LEU 357 357 357 LEU LEU A . n A 1 358 PRO 358 358 358 PRO PRO A . n A 1 359 GLN 359 359 359 GLN GLN A . n A 1 360 SER 360 360 360 SER SER A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 VAL 362 362 362 VAL VAL A . n A 1 363 LEU 363 363 363 LEU LEU A . n A 1 364 GLY 364 364 364 GLY GLY A . n A 1 365 LEU 365 365 365 LEU LEU A . n A 1 366 HIS 366 366 366 HIS HIS A . n A 1 367 ALA 367 367 367 ALA ALA A . n A 1 368 ILE 368 368 368 ILE ILE A . n A 1 369 LYS 369 369 369 LYS LYS A . n A 1 370 GLU 370 370 370 GLU GLU A . n A 1 371 ARG 371 371 371 ARG ARG A . n A 1 372 PRO 372 372 372 PRO PRO A . n A 1 373 VAL 373 373 373 VAL VAL A . n A 1 374 ALA 374 374 374 ALA ALA A . n A 1 375 VAL 375 375 375 VAL VAL A . n A 1 376 ASN 376 376 376 ASN ASN A . n A 1 377 GLY 377 377 377 GLY GLY A . n A 1 378 LYS 378 378 378 LYS LYS A . n A 1 379 VAL 379 379 379 VAL VAL A . n A 1 380 GLU 380 380 380 GLU GLU A . n A 1 381 ILE 381 381 381 ILE ILE A . n A 1 382 ARG 382 382 382 ARG ARG A . n A 1 383 PRO 383 383 383 PRO PRO A . n A 1 384 MET 384 384 384 MET MET A . n A 1 385 MET 385 385 385 MET MET A . n A 1 386 TYR 386 386 386 TYR TYR A . n A 1 387 LEU 387 387 387 LEU LEU A . n A 1 388 ALA 388 388 388 ALA ALA A . n A 1 389 LEU 389 389 389 LEU LEU A . n A 1 390 THR 390 390 390 THR THR A . n A 1 391 TYR 391 391 391 TYR TYR A . n A 1 392 ASP 392 392 392 ASP ASP A . n A 1 393 HIS 393 393 393 HIS HIS A . n A 1 394 ARG 394 394 394 ARG ARG A . n A 1 395 LEU 395 395 395 LEU LEU A . n A 1 396 LEU 396 396 396 LEU LEU A . n A 1 397 ASP 397 397 397 ASP ASP A . n A 1 398 GLY 398 398 398 GLY GLY A . n A 1 399 ARG 399 399 399 ARG ARG A . n A 1 400 GLU 400 400 400 GLU GLU A . n A 1 401 ALA 401 401 401 ALA ALA A . n A 1 402 VAL 402 402 402 VAL VAL A . n A 1 403 GLN 403 403 403 GLN GLN A . n A 1 404 PHE 404 404 404 PHE PHE A . n A 1 405 LEU 405 405 405 LEU LEU A . n A 1 406 VAL 406 406 406 VAL VAL A . n A 1 407 LYS 407 407 407 LYS LYS A . n A 1 408 VAL 408 408 408 VAL VAL A . n A 1 409 LYS 409 409 409 LYS LYS A . n A 1 410 GLU 410 410 410 GLU GLU A . n A 1 411 TYR 411 411 411 TYR TYR A . n A 1 412 ILE 412 412 412 ILE ILE A . n A 1 413 GLU 413 413 413 GLU GLU A . n A 1 414 ASP 414 414 414 ASP ASP A . n A 1 415 PRO 415 415 415 PRO PRO A . n A 1 416 ARG 416 416 416 ARG ARG A . n A 1 417 LYS 417 417 417 LYS LYS A . n A 1 418 MET 418 418 418 MET MET A . n A 1 419 LEU 419 419 419 LEU LEU A . n A 1 420 LEU 420 420 420 LEU LEU A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8OIU _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8OIU _struct.title ;Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8OIU _struct_keywords.text 'Dihydrolipoyl Succinyltransferase, E2, Oxoglutarate, a-Ketoglutarate, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G0SAX9_CHATD _struct_ref.pdbx_db_accession G0SAX9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLYRGLRMAARAAPKFAVLNTHAALRQLPLQFQHVRTYADKIIKVPQMAESITEGTLKQWNKAVGDYVEADEEIATIETD KIDVAVNAPEAGVIKEFFVNEEDTVLVGQDLVRLEVGGEKPAEAAKEQPKAAAPEPKVEEKKVPEAPAPEPSKTAAPAPA PPKQEAPASPKPASKPAETPAVTLGNREERRVKMNRMRLRIAERLKQSQNTAASLTTFNEVDMSALIEFRNKYKDEVLKK TGVKLGFMSAFSRAVVLAIRDLPVVNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLITIEKTIAELG KKARDGKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQSAVLGLHAIKERPVAVNGKVEIRPMMYLALTYDHRLLDGRE AVQFLVKVKEYIEDPRKMLL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8OIU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 420 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G0SAX9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 420 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 420 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,10,11,12,13,14,15,16,17,18,19,2,20,21,22,23,24,3,4,5,6,7,8,9 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'Size exclusion chromatography (SEC), Activity assays, Cryo-EM reconstruction at 3.35 A resolution (GS-FSC = 0.143)' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.000000 1.000000 -0.000000 0.00000 -1.000000 0.000000 0.000000 326.10200 0.000000 -0.000000 1.000000 0.00000 3 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 326.10200 0.000000 -1.000000 0.000000 326.10200 0.000000 0.000000 1.000000 0.00000 4 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 326.10200 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 326.10200 5 'point symmetry operation' ? ? -0.000000 0.000000 -1.000000 326.10200 0.000000 1.000000 0.000000 0.00000 1.000000 0.000000 -0.000000 0.00000 6 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 326.10200 -0.000000 -0.000000 -1.000000 326.10200 0.000000 -1.000000 0.000000 326.10200 7 'point symmetry operation' ? ? 0.000000 1.000000 -0.000000 0.00000 -0.000000 0.000000 -1.000000 326.10200 -1.000000 0.000000 0.000000 326.10200 8 'point symmetry operation' ? ? -0.000000 -1.000000 0.000000 326.10200 1.000000 -0.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 9 'point symmetry operation' ? ? 0.000000 -0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 326.10200 -0.000000 -1.000000 0.000000 326.10200 10 'point symmetry operation' ? ? 1.000000 0.000000 -0.000000 0.00000 -0.000000 0.000000 1.000000 0.00000 0.000000 -1.000000 0.000000 326.10200 11 'point symmetry operation' ? ? -0.000000 0.000000 1.000000 0.00000 0.000000 -1.000000 0.000000 326.10200 1.000000 0.000000 0.000000 0.00000 12 'point symmetry operation' ? ? 0.000000 1.000000 -0.000000 0.00000 -0.000000 0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 13 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 326.10200 0.000000 -1.000000 0.000000 326.10200 -1.000000 -0.000000 -0.000000 326.10200 14 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 326.10200 -1.000000 0.000000 -0.000000 326.10200 -0.000000 1.000000 0.000000 0.00000 15 'point symmetry operation' ? ? 0.000000 -0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 -0.000000 1.000000 0.000000 0.00000 16 'point symmetry operation' ? ? -0.000000 -1.000000 0.000000 326.10200 0.000000 -0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 326.10200 17 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 326.10200 0.000000 -0.000000 1.000000 0.00000 0.000000 1.000000 0.000000 0.00000 18 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 326.10200 0.000000 0.000000 -1.000000 326.10200 19 'point symmetry operation' ? ? -0.000000 1.000000 0.000000 0.00000 1.000000 0.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 326.10200 20 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 326.10200 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 326.10200 21 'point symmetry operation' ? ? -0.000000 -1.000000 -0.000000 326.10200 -1.000000 0.000000 0.000000 326.10200 0.000000 0.000000 -1.000000 326.10200 22 'point symmetry operation' ? ? 1.000000 0.000000 -0.000000 0.00000 -0.000000 0.000000 -1.000000 326.10200 0.000000 1.000000 0.000000 0.00000 23 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 -0.000000 1.000000 0.000000 0.00000 -1.000000 -0.000000 0.000000 326.10200 24 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 326.10200 0.000000 0.000000 -1.000000 326.10200 1.000000 0.000000 0.000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 195 ? THR A 211 ? ASN A 195 THR A 211 1 ? 17 HELX_P HELX_P2 AA2 MET A 223 ? THR A 241 ? MET A 223 THR A 241 1 ? 19 HELX_P HELX_P3 AA3 GLY A 246 ? ASP A 261 ? GLY A 246 ASP A 261 1 ? 16 HELX_P HELX_P4 AA4 ASP A 308 ? ASP A 325 ? ASP A 308 ASP A 325 1 ? 18 HELX_P HELX_P5 AA5 THR A 329 ? MET A 333 ? THR A 329 MET A 333 5 ? 5 HELX_P HELX_P6 AA6 GLY A 398 ? ASP A 414 ? GLY A 398 ASP A 414 1 ? 17 HELX_P HELX_P7 AA7 ASP A 414 ? LEU A 419 ? ASP A 414 LEU A 419 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 357 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 357 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 358 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 358 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 216 ? THR A 217 ? THR A 216 THR A 217 AA1 2 LEU A 389 ? THR A 390 ? LEU A 389 THR A 390 AA2 1 GLU A 220 ? ASP A 222 ? GLU A 220 ASP A 222 AA2 2 LYS A 378 ? TYR A 386 ? LYS A 378 TYR A 386 AA2 3 LYS A 369 ? VAL A 375 ? LYS A 369 VAL A 375 AA3 1 SER A 287 ? VAL A 288 ? SER A 287 VAL A 288 AA3 2 THR A 339 ? ASN A 342 ? THR A 339 ASN A 342 AA3 3 LEU A 363 ? LEU A 365 ? LEU A 363 LEU A 365 AA4 1 VAL A 290 ? ALA A 291 ? VAL A 290 ALA A 291 AA4 2 LEU A 296 ? VAL A 297 ? LEU A 296 VAL A 297 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 217 ? N THR A 217 O LEU A 389 ? O LEU A 389 AA2 1 2 N VAL A 221 ? N VAL A 221 O MET A 385 ? O MET A 385 AA2 2 3 O LYS A 378 ? O LYS A 378 N VAL A 375 ? N VAL A 375 AA3 1 2 N SER A 287 ? N SER A 287 O ILE A 340 ? O ILE A 340 AA3 2 3 N THR A 339 ? N THR A 339 O LEU A 363 ? O LEU A 363 AA4 1 2 N VAL A 290 ? N VAL A 290 O VAL A 297 ? O VAL A 297 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 273 ? ? 71.78 -7.16 2 1 ARG A 302 ? ? -79.18 -166.17 3 1 MET A 307 ? ? -173.88 146.78 4 1 LEU A 357 ? ? -37.11 135.44 5 1 PRO A 358 ? ? -84.10 38.86 6 1 ALA A 367 ? ? 58.36 71.88 7 1 ALA A 374 ? ? -102.66 64.37 8 1 ASN A 376 ? ? 35.46 42.70 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8OIU _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'Initial fitting was performed in ChimeraX v1.2, then real-space refined in PHENIX v1.19' _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7Q5Q _em_3d_fitting_list.pdb_chain_id all _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id all _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7Q5Q _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8OIU _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'SIMULTANEOUS ITERATIVE (SIRT)' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ;Particles were symmetry expanded for the final reconstruction, then local reconstruction was performed without symmetry application. ; _em_3d_reconstruction.resolution 3.35 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 69028 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 50 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Native 24-mer core of Oxoglutarate Dehydrogenase Complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8OIU _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model OTHER _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 92000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 77.15 _em_imaging.recording_temperature_maximum 103.15 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8OIU _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'For plunging, blot force 0 and blotting time of 4 sec were applied.' # _em_experiment.entry_id 8OIU _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8OIU _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LEU 2 ? A LEU 2 3 1 Y 1 A TYR 3 ? A TYR 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A ARG 7 ? A ARG 7 8 1 Y 1 A MET 8 ? A MET 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A ALA 10 ? A ALA 10 11 1 Y 1 A ARG 11 ? A ARG 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A PRO 14 ? A PRO 14 15 1 Y 1 A LYS 15 ? A LYS 15 16 1 Y 1 A PHE 16 ? A PHE 16 17 1 Y 1 A ALA 17 ? A ALA 17 18 1 Y 1 A VAL 18 ? A VAL 18 19 1 Y 1 A LEU 19 ? A LEU 19 20 1 Y 1 A ASN 20 ? A ASN 20 21 1 Y 1 A THR 21 ? A THR 21 22 1 Y 1 A HIS 22 ? A HIS 22 23 1 Y 1 A ALA 23 ? A ALA 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A LEU 25 ? A LEU 25 26 1 Y 1 A ARG 26 ? A ARG 26 27 1 Y 1 A GLN 27 ? A GLN 27 28 1 Y 1 A LEU 28 ? A LEU 28 29 1 Y 1 A PRO 29 ? A PRO 29 30 1 Y 1 A LEU 30 ? A LEU 30 31 1 Y 1 A GLN 31 ? A GLN 31 32 1 Y 1 A PHE 32 ? A PHE 32 33 1 Y 1 A GLN 33 ? A GLN 33 34 1 Y 1 A HIS 34 ? A HIS 34 35 1 Y 1 A VAL 35 ? A VAL 35 36 1 Y 1 A ARG 36 ? A ARG 36 37 1 Y 1 A THR 37 ? A THR 37 38 1 Y 1 A TYR 38 ? A TYR 38 39 1 Y 1 A ALA 39 ? A ALA 39 40 1 Y 1 A ASP 40 ? A ASP 40 41 1 Y 1 A LYS 41 ? A LYS 41 42 1 Y 1 A ILE 42 ? A ILE 42 43 1 Y 1 A ILE 43 ? A ILE 43 44 1 Y 1 A LYS 44 ? A LYS 44 45 1 Y 1 A VAL 45 ? A VAL 45 46 1 Y 1 A PRO 46 ? A PRO 46 47 1 Y 1 A GLN 47 ? A GLN 47 48 1 Y 1 A MET 48 ? A MET 48 49 1 Y 1 A ALA 49 ? A ALA 49 50 1 Y 1 A GLU 50 ? A GLU 50 51 1 Y 1 A SER 51 ? A SER 51 52 1 Y 1 A ILE 52 ? A ILE 52 53 1 Y 1 A THR 53 ? A THR 53 54 1 Y 1 A GLU 54 ? A GLU 54 55 1 Y 1 A GLY 55 ? A GLY 55 56 1 Y 1 A THR 56 ? A THR 56 57 1 Y 1 A LEU 57 ? A LEU 57 58 1 Y 1 A LYS 58 ? A LYS 58 59 1 Y 1 A GLN 59 ? A GLN 59 60 1 Y 1 A TRP 60 ? A TRP 60 61 1 Y 1 A ASN 61 ? A ASN 61 62 1 Y 1 A LYS 62 ? A LYS 62 63 1 Y 1 A ALA 63 ? A ALA 63 64 1 Y 1 A VAL 64 ? A VAL 64 65 1 Y 1 A GLY 65 ? A GLY 65 66 1 Y 1 A ASP 66 ? A ASP 66 67 1 Y 1 A TYR 67 ? A TYR 67 68 1 Y 1 A VAL 68 ? A VAL 68 69 1 Y 1 A GLU 69 ? A GLU 69 70 1 Y 1 A ALA 70 ? A ALA 70 71 1 Y 1 A ASP 71 ? A ASP 71 72 1 Y 1 A GLU 72 ? A GLU 72 73 1 Y 1 A GLU 73 ? A GLU 73 74 1 Y 1 A ILE 74 ? A ILE 74 75 1 Y 1 A ALA 75 ? A ALA 75 76 1 Y 1 A THR 76 ? A THR 76 77 1 Y 1 A ILE 77 ? A ILE 77 78 1 Y 1 A GLU 78 ? A GLU 78 79 1 Y 1 A THR 79 ? A THR 79 80 1 Y 1 A ASP 80 ? A ASP 80 81 1 Y 1 A LYS 81 ? A LYS 81 82 1 Y 1 A ILE 82 ? A ILE 82 83 1 Y 1 A ASP 83 ? A ASP 83 84 1 Y 1 A VAL 84 ? A VAL 84 85 1 Y 1 A ALA 85 ? A ALA 85 86 1 Y 1 A VAL 86 ? A VAL 86 87 1 Y 1 A ASN 87 ? A ASN 87 88 1 Y 1 A ALA 88 ? A ALA 88 89 1 Y 1 A PRO 89 ? A PRO 89 90 1 Y 1 A GLU 90 ? A GLU 90 91 1 Y 1 A ALA 91 ? A ALA 91 92 1 Y 1 A GLY 92 ? A GLY 92 93 1 Y 1 A VAL 93 ? A VAL 93 94 1 Y 1 A ILE 94 ? A ILE 94 95 1 Y 1 A LYS 95 ? A LYS 95 96 1 Y 1 A GLU 96 ? A GLU 96 97 1 Y 1 A PHE 97 ? A PHE 97 98 1 Y 1 A PHE 98 ? A PHE 98 99 1 Y 1 A VAL 99 ? A VAL 99 100 1 Y 1 A ASN 100 ? A ASN 100 101 1 Y 1 A GLU 101 ? A GLU 101 102 1 Y 1 A GLU 102 ? A GLU 102 103 1 Y 1 A ASP 103 ? A ASP 103 104 1 Y 1 A THR 104 ? A THR 104 105 1 Y 1 A VAL 105 ? A VAL 105 106 1 Y 1 A LEU 106 ? A LEU 106 107 1 Y 1 A VAL 107 ? A VAL 107 108 1 Y 1 A GLY 108 ? A GLY 108 109 1 Y 1 A GLN 109 ? A GLN 109 110 1 Y 1 A ASP 110 ? A ASP 110 111 1 Y 1 A LEU 111 ? A LEU 111 112 1 Y 1 A VAL 112 ? A VAL 112 113 1 Y 1 A ARG 113 ? A ARG 113 114 1 Y 1 A LEU 114 ? A LEU 114 115 1 Y 1 A GLU 115 ? A GLU 115 116 1 Y 1 A VAL 116 ? A VAL 116 117 1 Y 1 A GLY 117 ? A GLY 117 118 1 Y 1 A GLY 118 ? A GLY 118 119 1 Y 1 A GLU 119 ? A GLU 119 120 1 Y 1 A LYS 120 ? A LYS 120 121 1 Y 1 A PRO 121 ? A PRO 121 122 1 Y 1 A ALA 122 ? A ALA 122 123 1 Y 1 A GLU 123 ? A GLU 123 124 1 Y 1 A ALA 124 ? A ALA 124 125 1 Y 1 A ALA 125 ? A ALA 125 126 1 Y 1 A LYS 126 ? A LYS 126 127 1 Y 1 A GLU 127 ? A GLU 127 128 1 Y 1 A GLN 128 ? A GLN 128 129 1 Y 1 A PRO 129 ? A PRO 129 130 1 Y 1 A LYS 130 ? A LYS 130 131 1 Y 1 A ALA 131 ? A ALA 131 132 1 Y 1 A ALA 132 ? A ALA 132 133 1 Y 1 A ALA 133 ? A ALA 133 134 1 Y 1 A PRO 134 ? A PRO 134 135 1 Y 1 A GLU 135 ? A GLU 135 136 1 Y 1 A PRO 136 ? A PRO 136 137 1 Y 1 A LYS 137 ? A LYS 137 138 1 Y 1 A VAL 138 ? A VAL 138 139 1 Y 1 A GLU 139 ? A GLU 139 140 1 Y 1 A GLU 140 ? A GLU 140 141 1 Y 1 A LYS 141 ? A LYS 141 142 1 Y 1 A LYS 142 ? A LYS 142 143 1 Y 1 A VAL 143 ? A VAL 143 144 1 Y 1 A PRO 144 ? A PRO 144 145 1 Y 1 A GLU 145 ? A GLU 145 146 1 Y 1 A ALA 146 ? A ALA 146 147 1 Y 1 A PRO 147 ? A PRO 147 148 1 Y 1 A ALA 148 ? A ALA 148 149 1 Y 1 A PRO 149 ? A PRO 149 150 1 Y 1 A GLU 150 ? A GLU 150 151 1 Y 1 A PRO 151 ? A PRO 151 152 1 Y 1 A SER 152 ? A SER 152 153 1 Y 1 A LYS 153 ? A LYS 153 154 1 Y 1 A THR 154 ? A THR 154 155 1 Y 1 A ALA 155 ? A ALA 155 156 1 Y 1 A ALA 156 ? A ALA 156 157 1 Y 1 A PRO 157 ? A PRO 157 158 1 Y 1 A ALA 158 ? A ALA 158 159 1 Y 1 A PRO 159 ? A PRO 159 160 1 Y 1 A ALA 160 ? A ALA 160 161 1 Y 1 A PRO 161 ? A PRO 161 162 1 Y 1 A PRO 162 ? A PRO 162 163 1 Y 1 A LYS 163 ? A LYS 163 164 1 Y 1 A GLN 164 ? A GLN 164 165 1 Y 1 A GLU 165 ? A GLU 165 166 1 Y 1 A ALA 166 ? A ALA 166 167 1 Y 1 A PRO 167 ? A PRO 167 168 1 Y 1 A ALA 168 ? A ALA 168 169 1 Y 1 A SER 169 ? A SER 169 170 1 Y 1 A PRO 170 ? A PRO 170 171 1 Y 1 A LYS 171 ? A LYS 171 172 1 Y 1 A PRO 172 ? A PRO 172 173 1 Y 1 A ALA 173 ? A ALA 173 174 1 Y 1 A SER 174 ? A SER 174 175 1 Y 1 A LYS 175 ? A LYS 175 176 1 Y 1 A PRO 176 ? A PRO 176 177 1 Y 1 A ALA 177 ? A ALA 177 178 1 Y 1 A GLU 178 ? A GLU 178 179 1 Y 1 A THR 179 ? A THR 179 180 1 Y 1 A PRO 180 ? A PRO 180 181 1 Y 1 A ALA 181 ? A ALA 181 182 1 Y 1 A VAL 182 ? A VAL 182 183 1 Y 1 A THR 183 ? A THR 183 184 1 Y 1 A LEU 184 ? A LEU 184 185 1 Y 1 A GLY 185 ? A GLY 185 186 1 Y 1 A ASN 186 ? A ASN 186 187 1 Y 1 A ARG 187 ? A ARG 187 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2023-03-23 _em_admin.deposition_site PDBE _em_admin.entry_id 8OIU _em_admin.last_update 2024-07-24 _em_admin.map_release_date 2023-05-31 _em_admin.title ;Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution ; # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 200 _em_buffer_component.concentration_units mM _em_buffer_component.formula NH4CH2COOH _em_buffer_component.id 1 _em_buffer_component.name 'Ammonium acetate' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 3 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 759272 _em_entity_assembly_naturalsource.organism 'Thermochaetoides thermophila DSM 1495' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30.0 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 21381 # _em_particle_selection.details 'Template picking was directly applied' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1300 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 3.1 'IMAGE ACQUISITION' 'Data collection' 2 ? ? 1 EPU 2.6 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'Patch CTF' 4 1 ? ? cryoSPARC 3.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' 'Rigid fitting' 7 ? 1 ? 'UCSF ChimeraX' 1.2 OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' 'Real-space refinement' 9 ? 1 ? PHENIX 1.19 'INITIAL EULER ASSIGNMENT' 'Ab-initio reconstruction' 10 1 ? ? cryoSPARC 3.1 'FINAL EULER ASSIGNMENT' 'Local refinement (NEW)' 11 1 ? ? cryoSPARC 3.1 CLASSIFICATION '2D classification' 12 1 ? ? cryoSPARC 3.1 RECONSTRUCTION 'Local refinement (NEW)' 13 1 ? ? cryoSPARC 3.1 # _em_specimen.concentration 0.3 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7Q5Q # _atom_sites.entry_id 8OIU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #