HEADER IMMUNE SYSTEM 24-MAR-23 8OJV TITLE CRYSTAL STRUCTURE OF THE HUMAN IGD FAB - STRUCTURE FAB4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN IGD FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN IGD FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PVITRO; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PVITRO KEYWDS FAB, ANTIBODY, IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.M.DAVIES,R.L.BEAVIL,J.M.MCDONNELL REVDAT 2 16-OCT-24 8OJV 1 REMARK REVDAT 1 14-JUN-23 8OJV 0 JRNL AUTH A.M.DAVIES,R.L.BEAVIL,M.BARBOLOV,B.S.SANDHAR,H.J.GOULD, JRNL AUTH 2 A.J.BEAVIL,B.J.SUTTON,J.M.MCDONNELL JRNL TITL CRYSTAL STRUCTURES OF THE HUMAN IGD FAB REVEAL INSIGHTS INTO JRNL TITL 2 C H 1 DOMAIN DIVERSITY. JRNL REF MOL.IMMUNOL. V. 159 28 2023 JRNL REFN ISSN 0161-5890 JRNL PMID 37267832 JRNL DOI 10.1016/J.MOLIMM.2023.05.006 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.9300 - 4.8100 1.00 2764 145 0.1454 0.1641 REMARK 3 2 4.8100 - 3.8200 1.00 2630 139 0.1312 0.1682 REMARK 3 3 3.8200 - 3.3300 1.00 2621 139 0.1731 0.2271 REMARK 3 4 3.3300 - 3.0300 1.00 2567 133 0.1875 0.2096 REMARK 3 5 3.0300 - 2.8100 1.00 2589 136 0.2025 0.2642 REMARK 3 6 2.8100 - 2.6500 1.00 2562 136 0.2227 0.2506 REMARK 3 7 2.6500 - 2.5100 1.00 2563 134 0.2206 0.2777 REMARK 3 8 2.5100 - 2.4000 1.00 2550 135 0.2196 0.2887 REMARK 3 9 2.4000 - 2.3100 1.00 2515 132 0.2341 0.2648 REMARK 3 10 2.3100 - 2.2300 1.00 2559 134 0.2364 0.2947 REMARK 3 11 2.2300 - 2.1600 1.00 2560 136 0.2435 0.2984 REMARK 3 12 2.1600 - 2.1000 1.00 2533 133 0.2724 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3537 REMARK 3 ANGLE : 0.705 4808 REMARK 3 CHIRALITY : 0.047 528 REMARK 3 PLANARITY : 0.004 616 REMARK 3 DIHEDRAL : 12.439 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6201 -18.4896 1.8388 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.3263 REMARK 3 T33: 0.2833 T12: 0.0379 REMARK 3 T13: 0.0265 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.7437 L22: 1.2156 REMARK 3 L33: 1.1197 L12: 0.5117 REMARK 3 L13: -0.1844 L23: -0.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.0904 S13: -0.1357 REMARK 3 S21: -0.0031 S22: 0.0829 S23: -0.1391 REMARK 3 S31: -0.0612 S32: -0.0650 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 51 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8799 -17.4447 1.7692 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.3743 REMARK 3 T33: 0.2818 T12: 0.0181 REMARK 3 T13: 0.0232 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.9715 L22: 1.2303 REMARK 3 L33: 0.4722 L12: 0.5833 REMARK 3 L13: -0.4733 L23: -0.6261 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.1596 S13: -0.1412 REMARK 3 S21: -0.0406 S22: 0.1033 S23: 0.0368 REMARK 3 S31: -0.0453 S32: -0.0278 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 106 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9850 -21.3468 -26.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.2277 REMARK 3 T33: 0.2609 T12: -0.0105 REMARK 3 T13: 0.0365 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5240 L22: 0.0777 REMARK 3 L33: 1.6379 L12: -0.4530 REMARK 3 L13: 0.0611 L23: 0.6478 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: 0.1557 S13: 0.0080 REMARK 3 S21: -0.1323 S22: -0.0599 S23: 0.0504 REMARK 3 S31: 0.0392 S32: -0.1356 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 156 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8933 -21.3358 -22.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.3554 REMARK 3 T33: 0.3241 T12: -0.0131 REMARK 3 T13: 0.0401 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.1443 L22: 0.8924 REMARK 3 L33: 0.7036 L12: -0.3772 REMARK 3 L13: 0.1201 L23: -0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: 0.3956 S13: 0.0675 REMARK 3 S21: 0.2110 S22: 0.0149 S23: 0.0722 REMARK 3 S31: 0.1598 S32: -0.0948 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 177 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4355 -22.9078 -31.7566 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.3096 REMARK 3 T33: 0.2847 T12: -0.0008 REMARK 3 T13: 0.0641 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.9334 L22: 0.9200 REMARK 3 L33: 0.9230 L12: -0.4220 REMARK 3 L13: 0.8390 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.1224 S13: 0.0075 REMARK 3 S21: 0.0347 S22: -0.0891 S23: -0.0514 REMARK 3 S31: 0.1049 S32: 0.2462 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4580 2.4802 -1.9846 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.3068 REMARK 3 T33: 0.3431 T12: 0.0822 REMARK 3 T13: 0.0531 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.1583 L22: 1.9163 REMARK 3 L33: 1.5668 L12: 0.8599 REMARK 3 L13: -0.6563 L23: 0.2102 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.0390 S13: 0.3110 REMARK 3 S21: 0.1307 S22: 0.1140 S23: 0.1620 REMARK 3 S31: -0.4076 S32: -0.1563 S33: 0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6054 -3.5211 -28.5867 REMARK 3 T TENSOR REMARK 3 T11: 0.3493 T22: 0.2463 REMARK 3 T33: 0.2386 T12: -0.1263 REMARK 3 T13: 0.0380 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.4976 L22: 0.3125 REMARK 3 L33: 0.3005 L12: -0.3035 REMARK 3 L13: 0.0358 L23: -0.2213 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: -0.0253 S13: -0.0789 REMARK 3 S21: 0.1424 S22: -0.0910 S23: 0.0172 REMARK 3 S31: 0.1055 S32: 0.2495 S33: -0.0095 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 135 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5203 -11.6480 -31.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.2296 REMARK 3 T33: 0.2694 T12: -0.0438 REMARK 3 T13: 0.0170 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1003 L22: 2.1804 REMARK 3 L33: 1.2202 L12: -0.5700 REMARK 3 L13: -0.1447 L23: -1.7113 REMARK 3 S TENSOR REMARK 3 S11: 0.2011 S12: -0.0174 S13: -0.0694 REMARK 3 S21: -0.2436 S22: -0.1707 S23: -0.0911 REMARK 3 S31: 0.0943 S32: 0.0634 S33: 0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 192 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1827 -7.5906 -39.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.4481 T22: 0.3035 REMARK 3 T33: 0.3248 T12: 0.0126 REMARK 3 T13: -0.0461 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1190 L22: 1.1631 REMARK 3 L33: 0.7254 L12: 0.3355 REMARK 3 L13: -0.1022 L23: -1.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.2462 S12: 0.1143 S13: -0.0328 REMARK 3 S21: -0.6199 S22: -0.1795 S23: 0.2634 REMARK 3 S31: -0.2009 S32: -0.4854 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 71.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 18% PEG 8000 AND REMARK 280 0.2M LITHIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.88700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.81650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.82250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.81650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.88700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.82250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO H 225 REMARK 465 LYS H 226 REMARK 465 ALA H 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 107 NZ REMARK 470 LYS L 134 CE NZ REMARK 470 LYS L 154 CE NZ REMARK 470 GLU L 188 OE1 OE2 REMARK 470 ARG L 194 CG CD NE CZ NH1 NH2 REMARK 470 GLN H 62 CD OE1 NE2 REMARK 470 LYS H 63 CE NZ REMARK 470 GLU H 89 CD OE1 OE2 REMARK 470 LYS H 140 NZ REMARK 470 GLN H 196 OE1 NE2 REMARK 470 GLU H 223 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 2 33.89 -96.07 REMARK 500 ASN L 28 -80.79 -127.56 REMARK 500 ASN L 53 -44.32 78.68 REMARK 500 ASN L 54 18.58 -152.91 REMARK 500 SER L 69 -167.17 -100.48 REMARK 500 PRO L 146 -166.39 -75.35 REMARK 500 ASP L 156 -110.03 54.17 REMARK 500 GLU L 203 93.62 39.98 REMARK 500 GLU L 203 -137.87 46.35 REMARK 500 ASP H 54 -71.50 -83.11 REMARK 500 TYR H 102 -163.54 -100.65 REMARK 500 SER H 104 37.71 -143.02 REMARK 500 CYS H 136 12.84 89.23 REMARK 500 ARG H 137 -60.10 65.70 REMARK 500 HIS H 138 77.91 -115.44 REMARK 500 SER H 183 -5.95 78.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OJV L 1 217 PDB 8OJV 8OJV 1 217 DBREF 8OJV H 1 227 PDB 8OJV 8OJV 1 227 SEQRES 1 L 217 PCA SER ALA LEU THR GLN PRO PRO SER VAL SER GLY ALA SEQRES 2 L 217 PRO GLY GLN ARG VAL SER ILE SER CYS THR GLY GLY SER SEQRES 3 L 217 SER ASN PHE GLY ALA GLY TYR ASP VAL HIS TRP TYR GLN SEQRES 4 L 217 GLN LEU PRO ALA THR ALA PRO LYS LEU LEU ILE TYR GLY SEQRES 5 L 217 ASN ASN ASN ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 217 GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE THR SEQRES 7 L 217 GLY LEU GLN ALA GLU ASP GLU GLY ASP TYR PHE CYS GLN SEQRES 8 L 217 SER PHE ASP THR SER LEU SER GLY TRP ILE PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 227 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL ARG ASN SEQRES 2 H 227 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 227 TYR THR PHE THR SER TYR ALA ILE HIS TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY HIS ARG LEU GLU TRP VAL GLY ARG ILE ASN SEQRES 5 H 227 THR ASP ASN GLY ASN THR LYS TYR SER GLN LYS PHE HIS SEQRES 6 H 227 GLY ARG VAL ALA LEU SER ARG ASP THR SER ALA SER THR SEQRES 7 H 227 THR TYR MET ASP LEU SER SER LEU ASN SER GLU ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ARG ALA PHE TYR TYR SER SER SEQRES 9 H 227 GLY VAL MET PHE ASP SER TRP GLY GLN GLY ALA LEU VAL SEQRES 10 H 227 THR VAL SER SER ALA PRO THR LYS ALA PRO ASP VAL PHE SEQRES 11 H 227 PRO ILE ILE SER GLY CYS ARG HIS PRO LYS ASP ASN SER SEQRES 12 H 227 PRO VAL VAL LEU ALA CYS LEU ILE THR GLY TYR HIS PRO SEQRES 13 H 227 THR SER VAL THR VAL THR TRP TYR MET GLY THR GLN SER SEQRES 14 H 227 GLN PRO GLN ARG THR PHE PRO GLU ILE GLN ARG ARG ASP SEQRES 15 H 227 SER TYR TYR MET THR SER SER GLN LEU SER THR PRO LEU SEQRES 16 H 227 GLN GLN TRP ARG GLN GLY GLU TYR LYS CYS VAL VAL GLN SEQRES 17 H 227 HIS THR ALA SER LYS SER LYS LYS GLU ILE PHE ARG TRP SEQRES 18 H 227 PRO GLU SER PRO LYS ALA HET PCA L 1 8 HET PCA H 1 8 HET EDO L 301 4 HET EDO L 302 4 HET EDO L 303 4 HET PEG L 304 7 HET PEG L 305 7 HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 8 HET EDO H 306 4 HET EDO H 307 4 HET EDO H 308 4 HET EDO H 309 4 HET CL H 310 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 EDO 12(C2 H6 O2) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 17 CL CL 1- FORMUL 18 HOH *197(H2 O) HELIX 1 AA1 ASN L 28 GLY L 32 5 5 HELIX 2 AA2 GLN L 81 GLU L 85 5 5 HELIX 3 AA3 SER L 126 ALA L 132 1 7 HELIX 4 AA4 THR L 186 HIS L 193 1 8 HELIX 5 AA5 THR H 28 TYR H 32 5 5 HELIX 6 AA6 GLN H 62 HIS H 65 5 4 HELIX 7 AA7 ASN H 87 THR H 91 5 5 HELIX 8 AA8 THR H 210 LYS H 213 5 4 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 106 VAL L 110 1 O THR L 109 N VAL L 10 SHEET 3 AA1 5 GLY L 86 ASP L 94 -1 N GLY L 86 O LEU L 108 SHEET 4 AA1 5 HIS L 36 GLN L 40 -1 N GLN L 40 O ASP L 87 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O ILE L 50 N TRP L 37 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 106 VAL L 110 1 O THR L 109 N VAL L 10 SHEET 3 AA2 4 GLY L 86 ASP L 94 -1 N GLY L 86 O LEU L 108 SHEET 4 AA2 4 GLY L 99 PHE L 102 -1 O ILE L 101 N SER L 92 SHEET 1 AA3 3 VAL L 18 THR L 23 0 SHEET 2 AA3 3 SER L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AA3 3 PHE L 64 LYS L 68 -1 N SER L 65 O ALA L 76 SHEET 1 AA4 4 SER L 119 PHE L 123 0 SHEET 2 AA4 4 ALA L 135 PHE L 144 -1 O SER L 142 N SER L 119 SHEET 3 AA4 4 TYR L 177 LEU L 185 -1 O LEU L 185 N ALA L 135 SHEET 4 AA4 4 VAL L 164 THR L 166 -1 N GLU L 165 O TYR L 182 SHEET 1 AA5 4 SER L 119 PHE L 123 0 SHEET 2 AA5 4 ALA L 135 PHE L 144 -1 O SER L 142 N SER L 119 SHEET 3 AA5 4 TYR L 177 LEU L 185 -1 O LEU L 185 N ALA L 135 SHEET 4 AA5 4 SER L 170 LYS L 171 -1 N SER L 170 O ALA L 178 SHEET 1 AA6 4 SER L 158 PRO L 159 0 SHEET 2 AA6 4 THR L 150 ALA L 155 -1 N ALA L 155 O SER L 158 SHEET 3 AA6 4 TYR L 196 HIS L 202 -1 O THR L 201 N THR L 150 SHEET 4 AA6 4 SER L 205 VAL L 211 -1 O VAL L 207 N VAL L 200 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA7 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA8 6 GLU H 10 ARG H 12 0 SHEET 2 AA8 6 ALA H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA8 6 ALA H 92 TYR H 102 -1 N ALA H 92 O VAL H 117 SHEET 4 AA8 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 GLU H 46 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA8 6 THR H 58 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 AA9 4 GLU H 10 ARG H 12 0 SHEET 2 AA9 4 ALA H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA9 4 ALA H 92 TYR H 102 -1 N ALA H 92 O VAL H 117 SHEET 4 AA9 4 GLY H 105 TRP H 111 -1 O MET H 107 N PHE H 100 SHEET 1 AB1 4 ASP H 128 SER H 134 0 SHEET 2 AB1 4 VAL H 146 TYR H 154 -1 O THR H 152 N ASP H 128 SHEET 3 AB1 4 TYR H 185 LEU H 191 -1 O THR H 187 N ILE H 151 SHEET 4 AB1 4 GLN H 172 THR H 174 -1 N ARG H 173 O GLN H 190 SHEET 1 AB2 4 ASP H 128 SER H 134 0 SHEET 2 AB2 4 VAL H 146 TYR H 154 -1 O THR H 152 N ASP H 128 SHEET 3 AB2 4 TYR H 185 LEU H 191 -1 O THR H 187 N ILE H 151 SHEET 4 AB2 4 ILE H 178 GLN H 179 -1 N ILE H 178 O MET H 186 SHEET 1 AB3 4 GLN H 168 GLN H 170 0 SHEET 2 AB3 4 THR H 160 MET H 165 -1 N TRP H 163 O GLN H 170 SHEET 3 AB3 4 TYR H 203 HIS H 209 -1 O GLN H 208 N THR H 160 SHEET 4 AB3 4 SER H 214 ILE H 218 -1 O LYS H 216 N VAL H 207 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.08 SSBOND 2 CYS L 139 CYS L 198 1555 1555 2.03 SSBOND 3 CYS L 216 CYS H 136 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 5 CYS H 149 CYS H 205 1555 1555 2.03 LINK C PCA L 1 N SER L 2 1555 1555 1.33 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 TYR L 145 PRO L 146 0 -0.97 CISPEP 2 HIS H 155 PRO H 156 0 -3.16 CISPEP 3 THR H 157 SER H 158 0 -3.62 CRYST1 57.774 71.645 131.633 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007597 0.00000 HETATM 1 N PCA L 1 19.687 -15.603 16.472 1.00 39.79 N HETATM 2 CA PCA L 1 20.097 -14.961 15.232 1.00 41.64 C HETATM 3 CB PCA L 1 20.225 -15.992 14.111 1.00 42.19 C HETATM 4 CG PCA L 1 19.733 -17.319 14.659 1.00 46.02 C HETATM 5 CD PCA L 1 19.472 -17.001 16.104 1.00 37.60 C HETATM 6 OE PCA L 1 19.115 -17.868 16.902 1.00 40.48 O HETATM 7 C PCA L 1 19.127 -13.867 14.810 1.00 40.88 C HETATM 8 O PCA L 1 17.907 -14.047 14.864 1.00 36.36 O