HEADER FLAVOPROTEIN 26-MAR-23 8OK0 TITLE CRYSTAL STRUCTURE OF HUMAN NQO1 IN COMPLEX WITH THE INHIBITOR PMSF COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H DEHYDROGENASE [QUINONE] 1; COMPND 3 CHAIN: A, D, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE SEQUENCE IS CORRECT AND THE FAD, PMS, GOL AND ACE, COMPND 6 BELONG TO HETATM AND SHOULD NOT BE INCLUDED IN THE SEQUENCE OF THE COMPND 7 PROTEIN. SO THE SYSTEM IS DOING SOMETHING WRONG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HUMAN NQO1, FLAVOENZYME, CANCER, INHIBITORS, PMSF, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MARTIN-GARCIA,A.GRIECO,M.A.RUIZ-FRESNEDA REVDAT 3 22-NOV-23 8OK0 1 JRNL REVDAT 2 08-NOV-23 8OK0 1 JRNL REVDAT 1 01-NOV-23 8OK0 0 JRNL AUTH A.GRIECO,M.A.RUIZ-FRESNEDA,A.GOMEZ-MULAS,J.L.PACHECO-GARCIA, JRNL AUTH 2 I.QUEREDA-MORALEDA,A.L.PEY,J.M.MARTIN-GARCIA JRNL TITL STRUCTURAL DYNAMICS AT THE ACTIVE SITE OF THE JRNL TITL 2 CANCER-ASSOCIATED FLAVOENZYME NQO1 PROBED BY CHEMICAL JRNL TITL 3 MODIFICATION WITH PMSF. JRNL REF FEBS LETT. V. 597 2687 2023 JRNL REFN ISSN 0014-5793 JRNL PMID 37726177 JRNL DOI 10.1002/1873-3468.14738 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 135910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 15129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.5080 REMARK 3 BIN FREE R VALUE SET COUNT : 972 REMARK 3 BIN FREE R VALUE : 0.4990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 309 REMARK 3 SOLVENT ATOMS : 1016 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9345 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 8752 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12679 ; 1.420 ; 1.824 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20183 ; 0.530 ; 1.758 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1119 ; 6.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ; 5.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1551 ;14.267 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1331 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10880 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2196 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4428 ; 2.932 ; 3.392 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4427 ; 2.932 ; 3.392 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5555 ; 4.167 ; 6.087 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5556 ; 4.167 ; 6.087 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4917 ; 3.663 ; 3.787 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4918 ; 3.663 ; 3.788 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7123 ; 5.779 ; 6.767 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11397 ; 8.839 ;33.730 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11128 ; 8.869 ;33.200 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8OK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M SODIUM REMARK 280 ACETATE, 20% POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.90449 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.46400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.43406 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.90449 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.46400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 93.43406 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS C 59 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR D 129 C PMS D 302 1.79 REMARK 500 OH TYR C 129 O2S PMS B 305 1.89 REMARK 500 OH TYR A 129 O1S PMS A 302 1.89 REMARK 500 OD1 ASP B 134 OG SER B 226 2.06 REMARK 500 NZ LYS B 262 O HOH B 401 2.14 REMARK 500 O HOH B 417 O HOH B 530 2.14 REMARK 500 O HOH A 409 O HOH A 563 2.16 REMARK 500 OH TYR B 127 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 57 42.17 -94.89 REMARK 500 GLU A 124 -49.56 78.40 REMARK 500 TYR A 133 -124.49 61.94 REMARK 500 ILE A 176 -60.04 -100.27 REMARK 500 SER A 192 57.97 39.17 REMARK 500 HIS A 258 52.05 -101.49 REMARK 500 GLU D 124 -49.16 77.49 REMARK 500 TYR D 133 -124.34 61.37 REMARK 500 SER D 192 59.36 37.48 REMARK 500 HIS D 258 52.92 -101.55 REMARK 500 GLU B 124 -47.52 76.35 REMARK 500 TYR B 133 -126.23 62.02 REMARK 500 SER B 192 58.98 37.95 REMARK 500 HIS B 258 52.92 -102.22 REMARK 500 GLU C 124 -49.43 77.13 REMARK 500 TYR C 133 -120.92 60.86 REMARK 500 LEU C 158 161.55 -44.65 REMARK 500 GLN C 159 -3.43 -49.77 REMARK 500 GLN C 159 -3.43 40.80 REMARK 500 SER C 192 58.39 38.65 REMARK 500 HIS C 258 53.12 -102.31 REMARK 500 LYS C 262 -168.20 -119.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 157 LEU C 158 148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 15 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU C 158 12.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 710 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH D 648 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH D 649 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D 650 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D 651 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 603 DISTANCE = 7.20 ANGSTROMS DBREF 8OK0 A 1 273 UNP P15559 NQO1_HUMAN 1 273 DBREF 8OK0 D 1 273 UNP P15559 NQO1_HUMAN 1 273 DBREF 8OK0 B 1 273 UNP P15559 NQO1_HUMAN 1 273 DBREF 8OK0 C 1 273 UNP P15559 NQO1_HUMAN 1 273 SEQRES 1 A 273 MET VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER SEQRES 2 A 273 GLU ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA SEQRES 3 A 273 ALA ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SEQRES 4 A 273 SER ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER SEQRES 5 A 273 ARG LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN SEQRES 6 A 273 PHE GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU SEQRES 7 A 273 GLY HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS SEQRES 8 A 273 LEU GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 A 273 GLN TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE SEQRES 10 A 273 GLU ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA SEQRES 11 A 273 ALA MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA SEQRES 12 A 273 VAL LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SEQRES 13 A 273 SER LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU SEQRES 14 A 273 TRP PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE SEQRES 15 A 273 GLN VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS SEQRES 16 A 273 THR PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP SEQRES 17 A 273 LYS LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU SEQRES 18 A 273 TYR PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN SEQRES 19 A 273 ALA GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU SEQRES 20 A 273 LYS ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU SEQRES 21 A 273 GLY LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG SEQRES 1 D 273 MET VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER SEQRES 2 D 273 GLU ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA SEQRES 3 D 273 ALA ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SEQRES 4 D 273 SER ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER SEQRES 5 D 273 ARG LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN SEQRES 6 D 273 PHE GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU SEQRES 7 D 273 GLY HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS SEQRES 8 D 273 LEU GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 D 273 GLN TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE SEQRES 10 D 273 GLU ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA SEQRES 11 D 273 ALA MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA SEQRES 12 D 273 VAL LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SEQRES 13 D 273 SER LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU SEQRES 14 D 273 TRP PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE SEQRES 15 D 273 GLN VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS SEQRES 16 D 273 THR PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP SEQRES 17 D 273 LYS LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU SEQRES 18 D 273 TYR PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN SEQRES 19 D 273 ALA GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU SEQRES 20 D 273 LYS ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU SEQRES 21 D 273 GLY LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG SEQRES 1 B 273 MET VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER SEQRES 2 B 273 GLU ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA SEQRES 3 B 273 ALA ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SEQRES 4 B 273 SER ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER SEQRES 5 B 273 ARG LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN SEQRES 6 B 273 PHE GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU SEQRES 7 B 273 GLY HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS SEQRES 8 B 273 LEU GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 B 273 GLN TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE SEQRES 10 B 273 GLU ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA SEQRES 11 B 273 ALA MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA SEQRES 12 B 273 VAL LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SEQRES 13 B 273 SER LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU SEQRES 14 B 273 TRP PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE SEQRES 15 B 273 GLN VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS SEQRES 16 B 273 THR PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP SEQRES 17 B 273 LYS LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU SEQRES 18 B 273 TYR PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN SEQRES 19 B 273 ALA GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU SEQRES 20 B 273 LYS ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU SEQRES 21 B 273 GLY LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG SEQRES 1 C 273 MET VAL GLY ARG ARG ALA LEU ILE VAL LEU ALA HIS SER SEQRES 2 C 273 GLU ARG THR SER PHE ASN TYR ALA MET LYS GLU ALA ALA SEQRES 3 C 273 ALA ALA ALA LEU LYS LYS LYS GLY TRP GLU VAL VAL GLU SEQRES 4 C 273 SER ASP LEU TYR ALA MET ASN PHE ASN PRO ILE ILE SER SEQRES 5 C 273 ARG LYS ASP ILE THR GLY LYS LEU LYS ASP PRO ALA ASN SEQRES 6 C 273 PHE GLN TYR PRO ALA GLU SER VAL LEU ALA TYR LYS GLU SEQRES 7 C 273 GLY HIS LEU SER PRO ASP ILE VAL ALA GLU GLN LYS LYS SEQRES 8 C 273 LEU GLU ALA ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 C 273 GLN TRP PHE GLY VAL PRO ALA ILE LEU LYS GLY TRP PHE SEQRES 10 C 273 GLU ARG VAL PHE ILE GLY GLU PHE ALA TYR THR TYR ALA SEQRES 11 C 273 ALA MET TYR ASP LYS GLY PRO PHE ARG SER LYS LYS ALA SEQRES 12 C 273 VAL LEU SER ILE THR THR GLY GLY SER GLY SER MET TYR SEQRES 13 C 273 SER LEU GLN GLY ILE HIS GLY ASP MET ASN VAL ILE LEU SEQRES 14 C 273 TRP PRO ILE GLN SER GLY ILE LEU HIS PHE CYS GLY PHE SEQRES 15 C 273 GLN VAL LEU GLU PRO GLN LEU THR TYR SER ILE GLY HIS SEQRES 16 C 273 THR PRO ALA ASP ALA ARG ILE GLN ILE LEU GLU GLY TRP SEQRES 17 C 273 LYS LYS ARG LEU GLU ASN ILE TRP ASP GLU THR PRO LEU SEQRES 18 C 273 TYR PHE ALA PRO SER SER LEU PHE ASP LEU ASN PHE GLN SEQRES 19 C 273 ALA GLY PHE LEU MET LYS LYS GLU VAL GLN ASP GLU GLU SEQRES 20 C 273 LYS ASN LYS LYS PHE GLY LEU SER VAL GLY HIS HIS LEU SEQRES 21 C 273 GLY LYS SER ILE PRO THR ASP ASN GLN ILE LYS ALA ARG HET FAD A 301 53 HET PMS A 302 10 HET GOL A 303 6 HET ACE A 304 3 HET FAD D 301 53 HET PMS D 302 10 HET GOL D 303 6 HET ACE D 304 3 HET FAD B 301 53 HET PMS B 302 10 HET GOL B 303 6 HET ACE B 304 3 HET PMS B 305 11 HET FAD C 301 53 HET PMS C 302 11 HET GOL C 303 6 HET GOL C 304 6 HET GOL C 305 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PMS PHENYLMETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM ACE ACETYL GROUP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 6 PMS 5(C7 H8 O3 S) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 8 ACE 3(C2 H4 O) FORMUL 23 HOH *1016(H2 O) HELIX 1 AA1 SER A 17 LYS A 33 1 17 HELIX 2 AA2 SER A 52 ILE A 56 5 5 HELIX 3 AA3 GLN A 67 GLY A 79 1 13 HELIX 4 AA4 SER A 82 ALA A 95 1 14 HELIX 5 AA5 PRO A 110 PHE A 121 1 12 HELIX 6 AA6 THR A 128 GLY A 136 5 9 HELIX 7 AA7 SER A 152 SER A 157 5 6 HELIX 8 AA8 ASP A 164 SER A 174 1 11 HELIX 9 AA9 LEU A 177 GLY A 181 5 5 HELIX 10 AB1 SER A 192 THR A 196 5 5 HELIX 11 AB2 PRO A 197 GLU A 213 1 17 HELIX 12 AB3 ASN A 214 GLU A 218 5 5 HELIX 13 AB4 PRO A 225 PHE A 229 5 5 HELIX 14 AB5 LYS A 240 LYS A 248 1 9 HELIX 15 AB6 SER D 17 LYS D 33 1 17 HELIX 16 AB7 SER D 52 ILE D 56 5 5 HELIX 17 AB8 GLN D 67 GLY D 79 1 13 HELIX 18 AB9 SER D 82 ALA D 95 1 14 HELIX 19 AC1 PRO D 110 PHE D 121 1 12 HELIX 20 AC2 THR D 128 GLY D 136 5 9 HELIX 21 AC3 SER D 152 SER D 157 5 6 HELIX 22 AC4 ASP D 164 SER D 174 1 11 HELIX 23 AC5 LEU D 177 GLY D 181 5 5 HELIX 24 AC6 SER D 192 THR D 196 5 5 HELIX 25 AC7 PRO D 197 GLU D 213 1 17 HELIX 26 AC8 ASN D 214 GLU D 218 5 5 HELIX 27 AC9 PRO D 225 PHE D 229 5 5 HELIX 28 AD1 LYS D 240 LYS D 248 1 9 HELIX 29 AD2 SER B 17 LYS B 33 1 17 HELIX 30 AD3 SER B 52 ILE B 56 5 5 HELIX 31 AD4 GLN B 67 GLY B 79 1 13 HELIX 32 AD5 SER B 82 ALA B 95 1 14 HELIX 33 AD6 PRO B 110 PHE B 121 1 12 HELIX 34 AD7 THR B 128 GLY B 136 5 9 HELIX 35 AD8 SER B 152 SER B 157 5 6 HELIX 36 AD9 ASP B 164 SER B 174 1 11 HELIX 37 AE1 LEU B 177 GLY B 181 5 5 HELIX 38 AE2 SER B 192 THR B 196 5 5 HELIX 39 AE3 PRO B 197 GLU B 213 1 17 HELIX 40 AE4 ASN B 214 GLU B 218 5 5 HELIX 41 AE5 PRO B 225 PHE B 229 5 5 HELIX 42 AE6 LYS B 240 LYS B 248 1 9 HELIX 43 AE7 SER C 17 LYS C 33 1 17 HELIX 44 AE8 SER C 52 ILE C 56 5 5 HELIX 45 AE9 GLN C 67 GLY C 79 1 13 HELIX 46 AF1 SER C 82 ALA C 95 1 14 HELIX 47 AF2 PRO C 110 PHE C 121 1 12 HELIX 48 AF3 THR C 128 GLY C 136 5 9 HELIX 49 AF4 SER C 152 SER C 157 5 6 HELIX 50 AF5 ASP C 164 SER C 174 1 11 HELIX 51 AF6 LEU C 177 GLY C 181 5 5 HELIX 52 AF7 SER C 192 THR C 196 5 5 HELIX 53 AF8 PRO C 197 GLU C 213 1 17 HELIX 54 AF9 ASN C 214 GLU C 218 5 5 HELIX 55 AG1 PRO C 225 PHE C 229 5 5 HELIX 56 AG2 LYS C 240 LYS C 248 1 9 SHEET 1 AA1 5 GLU A 36 ASP A 41 0 SHEET 2 AA1 5 ARG A 5 LEU A 10 1 N ALA A 6 O GLU A 36 SHEET 3 AA1 5 LEU A 97 PRO A 103 1 O ILE A 99 N VAL A 9 SHEET 4 AA1 5 LYS A 142 THR A 148 1 O SER A 146 N PHE A 100 SHEET 5 AA1 5 GLN A 183 VAL A 184 1 O GLN A 183 N ALA A 143 SHEET 1 AA2 5 GLU A 36 ASP A 41 0 SHEET 2 AA2 5 ARG A 5 LEU A 10 1 N ALA A 6 O GLU A 36 SHEET 3 AA2 5 LEU A 97 PRO A 103 1 O ILE A 99 N VAL A 9 SHEET 4 AA2 5 LYS A 142 THR A 148 1 O SER A 146 N PHE A 100 SHEET 5 AA2 5 GLN A 188 THR A 190 1 O THR A 190 N ILE A 147 SHEET 1 AA3 5 GLU D 36 ASP D 41 0 SHEET 2 AA3 5 ARG D 5 LEU D 10 1 N ALA D 6 O GLU D 36 SHEET 3 AA3 5 LEU D 97 PRO D 103 1 O ILE D 99 N VAL D 9 SHEET 4 AA3 5 LYS D 142 THR D 148 1 O SER D 146 N PHE D 100 SHEET 5 AA3 5 GLN D 183 VAL D 184 1 O GLN D 183 N ALA D 143 SHEET 1 AA4 5 GLU D 36 ASP D 41 0 SHEET 2 AA4 5 ARG D 5 LEU D 10 1 N ALA D 6 O GLU D 36 SHEET 3 AA4 5 LEU D 97 PRO D 103 1 O ILE D 99 N VAL D 9 SHEET 4 AA4 5 LYS D 142 THR D 148 1 O SER D 146 N PHE D 100 SHEET 5 AA4 5 GLN D 188 THR D 190 1 O THR D 190 N ILE D 147 SHEET 1 AA5 5 GLU B 36 ASP B 41 0 SHEET 2 AA5 5 ARG B 5 LEU B 10 1 N ALA B 6 O GLU B 36 SHEET 3 AA5 5 LEU B 97 PRO B 103 1 O ILE B 99 N VAL B 9 SHEET 4 AA5 5 LYS B 142 THR B 148 1 O SER B 146 N PHE B 100 SHEET 5 AA5 5 GLN B 183 VAL B 184 1 O GLN B 183 N ALA B 143 SHEET 1 AA6 5 GLU B 36 ASP B 41 0 SHEET 2 AA6 5 ARG B 5 LEU B 10 1 N ALA B 6 O GLU B 36 SHEET 3 AA6 5 LEU B 97 PRO B 103 1 O ILE B 99 N VAL B 9 SHEET 4 AA6 5 LYS B 142 THR B 148 1 O SER B 146 N PHE B 100 SHEET 5 AA6 5 GLN B 188 THR B 190 1 O THR B 190 N ILE B 147 SHEET 1 AA7 5 GLU C 36 ASP C 41 0 SHEET 2 AA7 5 ARG C 5 LEU C 10 1 N ALA C 6 O GLU C 36 SHEET 3 AA7 5 LEU C 97 PRO C 103 1 O ILE C 99 N VAL C 9 SHEET 4 AA7 5 LYS C 142 THR C 148 1 O SER C 146 N PHE C 100 SHEET 5 AA7 5 GLN C 183 VAL C 184 1 O GLN C 183 N ALA C 143 SHEET 1 AA8 5 GLU C 36 ASP C 41 0 SHEET 2 AA8 5 ARG C 5 LEU C 10 1 N ALA C 6 O GLU C 36 SHEET 3 AA8 5 LEU C 97 PRO C 103 1 O ILE C 99 N VAL C 9 SHEET 4 AA8 5 LYS C 142 THR C 148 1 O SER C 146 N PHE C 100 SHEET 5 AA8 5 GLN C 188 THR C 190 1 O THR C 190 N ILE C 147 LINK OH TYR A 129 S PMS A 302 1555 1555 1.63 LINK OH TYR D 129 S PMS D 302 1555 1555 1.59 LINK OH TYR B 129 S PMS B 302 1555 1555 1.61 CRYST1 107.172 58.928 189.161 90.00 98.93 90.00 I 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009331 0.000000 0.001466 0.00000 SCALE2 0.000000 0.016970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005351 0.00000