HEADER OXIDOREDUCTASE 31-MAR-23 8OMX TITLE NI,FE-CODH -600MV STATE : 1 MIN DIOXYGEN EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.7.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII, CHY_0085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLUSTER C, 4FE-4S, CYTOPLASM, IRON, IRON-SULFUR, MEMBRANE, METAL- KEYWDS 2 BINDING, NICKEL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASAK,J.-H.JEOUNG,H.DOBBEK REVDAT 1 06-DEC-23 8OMX 0 JRNL AUTH Y.BASAK,J.H.JEOUNG,L.DOMNIK,H.DOBBEK JRNL TITL STEPWISE O 2 -INDUCED REARRANGEMENT AND DISASSEMBLY OF THE JRNL TITL 2 [NIFE 4 (OH)( MU 3 -S) 4 ] ACTIVE SITE CLUSTER OF CO JRNL TITL 3 DEHYDROGENASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 05341 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 37279092 JRNL DOI 10.1002/ANIE.202305341 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 83024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.530 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8200 - 3.7100 0.95 5585 146 0.1264 0.1636 REMARK 3 2 3.7100 - 2.9400 0.96 5557 144 0.1430 0.1839 REMARK 3 3 2.9400 - 2.5700 0.91 5244 136 0.1554 0.1855 REMARK 3 4 2.5700 - 2.3300 0.94 5412 140 0.1563 0.1920 REMARK 3 5 2.3300 - 2.1700 0.95 5447 141 0.1480 0.1810 REMARK 3 6 2.1700 - 2.0400 0.96 5549 145 0.1482 0.2072 REMARK 3 7 2.0400 - 1.9400 0.96 5485 142 0.1483 0.1903 REMARK 3 8 1.9400 - 1.8500 0.91 5257 136 0.1583 0.1943 REMARK 3 9 1.8500 - 1.7800 0.96 5459 142 0.1605 0.1980 REMARK 3 10 1.7800 - 1.7200 0.96 5524 143 0.1693 0.2526 REMARK 3 11 1.7200 - 1.6700 0.95 5444 141 0.1958 0.2114 REMARK 3 12 1.6700 - 1.6200 0.95 5429 141 0.2072 0.2393 REMARK 3 13 1.6200 - 1.5800 0.95 5394 140 0.2332 0.2417 REMARK 3 14 1.5800 - 1.5400 0.93 5376 140 0.2631 0.2505 REMARK 3 15 1.5400 - 1.5000 0.83 4762 123 0.3082 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4897 REMARK 3 ANGLE : 1.091 6705 REMARK 3 CHIRALITY : 1.454 808 REMARK 3 PLANARITY : 0.010 869 REMARK 3 DIHEDRAL : 19.557 1835 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 4 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.8270 -7.7772 74.9417 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1533 REMARK 3 T33: 0.1783 T12: 0.0032 REMARK 3 T13: 0.0047 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.3606 L22: 0.3533 REMARK 3 L33: 0.3997 L12: 0.0162 REMARK 3 L13: 0.3387 L23: -0.0930 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.0095 S13: -0.1195 REMARK 3 S21: 0.0492 S22: -0.0331 S23: -0.0638 REMARK 3 S31: 0.0892 S32: 0.0298 S33: 0.0023 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 74 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.1315 27.9151 76.7531 REMARK 3 T TENSOR REMARK 3 T11: 0.2417 T22: 0.1278 REMARK 3 T33: 0.2101 T12: -0.0181 REMARK 3 T13: -0.0406 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.5196 L22: 0.5895 REMARK 3 L33: 0.6908 L12: -0.2639 REMARK 3 L13: -0.0794 L23: 0.1088 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: 0.0019 S13: 0.2016 REMARK 3 S21: 0.0246 S22: 0.0047 S23: -0.0108 REMARK 3 S31: -0.2978 S32: 0.0444 S33: -0.0333 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 155 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.5528 20.2944 64.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1603 REMARK 3 T33: 0.1642 T12: -0.0389 REMARK 3 T13: -0.0027 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.3191 L22: 0.5090 REMARK 3 L33: 0.2137 L12: 0.0591 REMARK 3 L13: 0.2295 L23: -0.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: 0.0942 S13: 0.0827 REMARK 3 S21: -0.0848 S22: 0.0067 S23: -0.0622 REMARK 3 S31: -0.1721 S32: 0.0714 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 235 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.7496 16.1624 100.3532 REMARK 3 T TENSOR REMARK 3 T11: 0.3226 T22: 0.1670 REMARK 3 T33: 0.1205 T12: -0.0010 REMARK 3 T13: -0.0145 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.5321 L22: 0.2189 REMARK 3 L33: 0.2901 L12: 0.3044 REMARK 3 L13: -0.0556 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.1194 S13: 0.1048 REMARK 3 S21: 0.3330 S22: -0.0196 S23: 0.0156 REMARK 3 S31: -0.1349 S32: -0.1517 S33: -0.0283 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 294 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.7287 11.5232 93.5956 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.2046 REMARK 3 T33: 0.1687 T12: 0.0114 REMARK 3 T13: 0.0135 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5373 L22: 0.7976 REMARK 3 L33: 0.3652 L12: 0.2575 REMARK 3 L13: 0.2183 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.1186 S13: 0.0874 REMARK 3 S21: 0.2531 S22: 0.0115 S23: 0.0678 REMARK 3 S31: -0.1574 S32: -0.0848 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 390 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.0817 10.8038 88.3206 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.2017 REMARK 3 T33: 0.2014 T12: -0.0521 REMARK 3 T13: -0.0511 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.4117 L22: 0.8862 REMARK 3 L33: 0.3342 L12: 0.1131 REMARK 3 L13: -0.1455 L23: -0.2648 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.0959 S13: -0.0926 REMARK 3 S21: 0.2003 S22: -0.0876 S23: -0.1878 REMARK 3 S31: -0.0833 S32: 0.0960 S33: 0.0047 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 512 THROUGH 636 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.3935 9.5691 72.2568 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1804 REMARK 3 T33: 0.1822 T12: -0.0352 REMARK 3 T13: 0.0028 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.4860 L22: 0.6771 REMARK 3 L33: 0.2763 L12: 0.1445 REMARK 3 L13: 0.0362 L23: 0.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0114 S13: -0.0587 REMARK 3 S21: 0.0406 S22: -0.0167 S23: -0.1502 REMARK 3 S31: -0.0655 S32: 0.0998 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.380 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1150 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, PEG 3350 10-18%, REMARK 280 AMMONIUM SULPHATE 0.18M, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.37000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.37000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.75050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 172.44170 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 132.80683 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 LYS X 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS X 294 S H2S X 1005 1.32 REMARK 500 NE2 HIS X 261 FE FE2 X 1004 1.70 REMARK 500 OE2 GLU X 615 O HOH X 1101 2.18 REMARK 500 O HOH X 1184 O HOH X 1607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 54.33 -93.24 REMARK 500 ASP X 63 -162.63 -110.11 REMARK 500 ALA X 112 86.62 -158.51 REMARK 500 LYS X 157 -169.77 -165.79 REMARK 500 CYS X 201 -122.26 -117.16 REMARK 500 CYS X 201 -122.51 -117.03 REMARK 500 ALA X 203 46.39 -147.42 REMARK 500 THR X 242 -154.32 -156.11 REMARK 500 ASN X 245 171.33 95.31 REMARK 500 HIS X 261 -45.88 -132.19 REMARK 500 CYS X 294 -152.60 60.58 REMARK 500 CYS X 294 -153.30 60.58 REMARK 500 SER X 312 -115.93 46.70 REMARK 500 ASP X 330 -94.84 -111.88 REMARK 500 ASP X 330 -96.30 -110.32 REMARK 500 GLN X 332 126.10 83.80 REMARK 500 ASN X 420 96.89 -162.67 REMARK 500 ASP X 454 -7.89 82.00 REMARK 500 MET X 560 -55.59 -136.61 REMARK 500 SER X 598 -67.40 -140.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X1670 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH X1671 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 107.6 REMARK 620 3 FES X1002 S2 115.3 102.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 116.8 REMARK 620 3 FES X1002 S2 112.5 103.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 117.3 REMARK 620 3 SF4 X1001 S2 108.5 105.2 REMARK 620 4 SF4 X1001 S4 113.0 104.5 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 120.5 REMARK 620 3 SF4 X1001 S3 101.1 104.6 REMARK 620 4 SF4 X1001 S4 121.7 103.5 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 108.2 REMARK 620 3 SF4 X1001 S3 117.6 103.3 REMARK 620 4 SF4 X1001 S4 116.2 106.4 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 120.4 REMARK 620 3 SF4 X1001 S2 116.1 101.8 REMARK 620 4 SF4 X1001 S3 111.1 102.2 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 295 SG REMARK 620 2 NFS X1003 S1 107.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS X1003 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 NFS X1003 S1 114.7 REMARK 620 3 NFS X1003 S4 117.0 96.4 REMARK 620 4 NFS X1003 S5 100.4 120.7 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS X1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 NFS X1003 S3 126.6 REMARK 620 3 NFS X1003 S4 108.3 101.1 REMARK 620 4 NFS X1003 S5 111.6 98.7 109.3 REMARK 620 5 HOH X1568 O 83.6 87.2 155.7 46.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS X1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 NFS X1003 S1 114.1 REMARK 620 3 NFS X1003 S3 108.9 111.5 REMARK 620 4 NFS X1003 S4 114.3 100.4 107.3 REMARK 620 5 H2S X1005 S 74.1 57.7 168.1 81.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS X1003 NI1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 NFS X1003 S2 90.3 REMARK 620 3 NFS X1003 S3 89.3 156.3 REMARK 620 4 NFS X1003 S5 170.3 80.0 99.4 REMARK 620 5 HOH X1524 O 93.3 50.9 152.7 81.0 REMARK 620 6 HOH X1568 O 131.9 101.4 96.4 51.9 62.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NFS X1003 S1 REMARK 620 2 NFS X1003 S2 130.9 REMARK 620 N 1 DBREF 8OMX X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQRES 1 X 636 MET ALA LYS GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 X 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 X 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 X 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 X 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 X 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 X 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 X 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 X 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 X 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 X 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 X 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 X 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 X 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 X 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 X 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 X 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 X 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 X 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 X 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 X 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 X 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 X 636 GLY ILE ASN VAL VAL GLY ILE CYS CYS THR GLY ASN GLU SEQRES 24 X 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 X 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 X 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 X 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 X 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 X 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 X 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 X 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 X 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 X 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 X 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 X 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 X 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 X 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 X 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 X 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 X 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 X 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 X 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 X 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 X 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 X 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 X 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 X 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 X 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 X 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP HET SF4 X1001 8 HET FES X1002 4 HET NFS X1003 9 HET FE2 X1004 2 HET H2S X1005 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM NFS FE(4)-NI(1)-S(5) CLUSTER HETNAM FE2 FE (II) ION HETNAM H2S HYDROSULFURIC ACID HETSYN H2S HYDROGEN SULFIDE FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 NFS FE4 NI S5 FORMUL 5 FE2 FE 2+ FORMUL 6 H2S H2 S FORMUL 7 HOH *571(H2 O) HELIX 1 AA1 ASP X 10 GLY X 24 1 15 HELIX 2 AA2 THR X 27 LYS X 36 1 10 HELIX 3 AA3 CYS X 39 GLY X 45 1 7 HELIX 4 AA4 THR X 73 GLN X 109 1 37 HELIX 5 AA5 ASP X 119 GLY X 131 1 13 HELIX 6 AA6 LYS X 138 ASP X 153 1 16 HELIX 7 AA7 VAL X 161 THR X 166 1 6 HELIX 8 AA8 PRO X 169 HIS X 179 1 11 HELIX 9 AA9 GLY X 185 THR X 197 1 13 HELIX 10 AB1 ASP X 204 GLY X 235 1 32 HELIX 11 AB2 ASN X 245 LEU X 249 5 5 HELIX 12 AB3 LEU X 265 MET X 276 1 12 HELIX 13 AB4 MET X 276 ALA X 283 1 8 HELIX 14 AB5 CYS X 294 GLY X 305 1 12 HELIX 15 AB6 HIS X 311 SER X 314 5 4 HELIX 16 AB7 GLN X 315 THR X 321 1 7 HELIX 17 AB8 SER X 337 GLY X 346 1 10 HELIX 18 AB9 ALA X 367 GLU X 369 5 3 HELIX 19 AC1 ALA X 370 ARG X 389 1 20 HELIX 20 AC2 SER X 408 LYS X 418 1 11 HELIX 21 AC3 PRO X 424 ASN X 434 1 11 HELIX 22 AC4 ASP X 454 GLN X 467 1 14 HELIX 23 AC5 GLY X 475 HIS X 484 1 10 HELIX 24 AC6 ASP X 488 ALA X 490 5 3 HELIX 25 AC7 ASN X 491 CYS X 496 1 6 HELIX 26 AC8 GLY X 497 ASN X 511 1 15 HELIX 27 AC9 ASP X 528 GLY X 544 1 17 HELIX 28 AD1 ASP X 546 LEU X 550 5 5 HELIX 29 AD2 HIS X 561 GLY X 575 1 15 HELIX 30 AD3 SER X 589 SER X 598 1 10 HELIX 31 AD4 VAL X 600 GLY X 605 1 6 HELIX 32 AD5 ASP X 613 LEU X 632 1 20 SHEET 1 AA1 2 CYS X 47 CYS X 48 0 SHEET 2 AA1 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 AA2 2 VAL X 240 SER X 244 0 SHEET 2 AA2 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 AA3 6 ALA X 308 THR X 310 0 SHEET 2 AA3 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 AA3 6 VAL X 254 HIS X 259 1 N VAL X 254 O ASN X 289 SHEET 4 AA3 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 AA3 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 AA3 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 AA4 6 VAL X 520 GLY X 524 0 SHEET 2 AA4 6 LEU X 470 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 AA4 6 VAL X 440 PHE X 443 1 N CYS X 441 O VAL X 472 SHEET 4 AA4 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 AA4 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 554 SHEET 6 AA4 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK S1 NFS X1003 S H2S X1005 1555 1555 2.04 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.28 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.31 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.35 LINK SG CYS X 51 FE2 SF4 X1001 1555 1555 2.30 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.36 LINK SG CYS X 70 FE4 SF4 X1001 1555 1555 2.28 LINK SG BCYS X 295 FE BFE2 X1004 1555 1555 2.31 LINK SG CYS X 333 FE2 NFS X1003 1555 1555 2.25 LINK SG CYS X 446 FE3 NFS X1003 1555 1555 2.37 LINK SG CYS X 476 FE4 NFS X1003 1555 1555 2.36 LINK SG ACYS X 526 NI1 NFS X1003 1555 1555 2.19 LINK S1 NFS X1003 FE BFE2 X1004 1555 1555 2.44 LINK S1 NFS X1003 FE AFE2 X1004 1555 1555 2.49 LINK S2 NFS X1003 FE AFE2 X1004 1555 1555 2.40 LINK FE4 NFS X1003 S H2S X1005 1555 1555 2.03 LINK NI1 NFS X1003 O HOH X1524 1555 1555 2.08 LINK NI1 NFS X1003 O HOH X1568 1555 1555 2.16 LINK FE3 NFS X1003 O HOH X1568 1555 1555 2.52 CISPEP 1 LYS X 36 PRO X 37 0 -4.02 CISPEP 2 GLY X 54 PRO X 55 0 5.24 CISPEP 3 GLU X 64 PRO X 65 0 2.53 CISPEP 4 GLU X 64 PRO X 65 0 3.86 CRYST1 112.740 75.501 71.503 90.00 111.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008870 0.000000 0.003542 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015059 0.00000