HEADER MEMBRANE PROTEIN 04-APR-23 8OO1 TITLE WIDE INWARD-OPEN LIGANDED URAA IN COMPLEX WITH A CONFORMATION- TITLE 2 SELECTIVE SYNTHETIC NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL PERMEASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: URACIL TRANSPORTER,URACIL/H(+) SYMPORTER URAA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SY45; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: URAA, Z3760, ECS3359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1211845; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 1211845 KEYWDS SLC23, URACIL TRANSPORTER, URAA, MEMBRANE PROTEIN, SYBODY, NANOBODY EXPDTA X-RAY DIFFRACTION AUTHOR B.T.KUHN,E.R.GEERTSMA REVDAT 1 10-APR-24 8OO1 0 JRNL AUTH B.T.KUHN,J.ZOELLER,I.ZIMMERMANN,T.GEMEINHARDT,D.OEZKUL, JRNL AUTH 2 J.D.LANGER,M.A.SEEGER,E.R.GEERTSMA JRNL TITL INTERDOMAIN-LINKERS CONTROL CONFORMATIONAL TRANSITIONS IN AN JRNL TITL 2 SLC23 ELEVATOR TRANSPORTER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 19362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4200 - 7.0700 0.99 2721 159 0.2547 0.2837 REMARK 3 2 7.0700 - 5.6200 1.00 2673 147 0.2805 0.2768 REMARK 3 3 5.6200 - 4.9100 1.00 2691 133 0.2560 0.2926 REMARK 3 4 4.9100 - 4.4600 1.00 2644 162 0.2449 0.2724 REMARK 3 5 4.4600 - 4.1400 1.00 2659 131 0.2664 0.2760 REMARK 3 6 4.1400 - 3.9000 1.00 2669 142 0.2947 0.3452 REMARK 3 7 3.9000 - 3.7000 0.87 2316 115 0.3264 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.505 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.097 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8330 REMARK 3 ANGLE : 0.453 11334 REMARK 3 CHIRALITY : 0.037 1403 REMARK 3 PLANARITY : 0.003 1359 REMARK 3 DIHEDRAL : 20.141 1205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 4 THROUGH 412) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8854 15.1533 18.4489 REMARK 3 T TENSOR REMARK 3 T11: 0.3743 T22: 0.2598 REMARK 3 T33: 0.2526 T12: 0.0259 REMARK 3 T13: 0.0594 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 0.6525 L22: 1.0023 REMARK 3 L33: 1.1464 L12: -0.4853 REMARK 3 L13: -0.1398 L23: -0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.2333 S12: -0.0294 S13: 0.0768 REMARK 3 S21: -0.1283 S22: 0.0895 S23: 0.1678 REMARK 3 S31: -0.5454 S32: -0.2284 S33: 0.2588 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 125) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6056 -0.6443 -4.0897 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.4620 REMARK 3 T33: 0.3821 T12: -0.0252 REMARK 3 T13: -0.0363 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.3987 L22: 0.3522 REMARK 3 L33: 1.2741 L12: -0.3195 REMARK 3 L13: -0.3519 L23: 0.4311 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: 0.0081 S13: -0.1834 REMARK 3 S21: -0.1102 S22: 0.0137 S23: -0.1078 REMARK 3 S31: -0.1698 S32: 0.2399 S33: -0.0791 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 5 THROUGH 412) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9491 -25.0545 31.2035 REMARK 3 T TENSOR REMARK 3 T11: 0.3941 T22: 0.2210 REMARK 3 T33: 0.1415 T12: 0.0141 REMARK 3 T13: 0.0524 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 0.6185 L22: 0.7228 REMARK 3 L33: 1.1639 L12: 0.1869 REMARK 3 L13: -0.3816 L23: 0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1893 S13: -0.0486 REMARK 3 S21: 0.2011 S22: 0.1119 S23: 0.1365 REMARK 3 S31: 0.6298 S32: -0.2543 S33: 0.2907 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 0 THROUGH 125) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9379 -8.9477 59.9758 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.3528 REMARK 3 T33: 0.2639 T12: 0.0370 REMARK 3 T13: -0.0677 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 0.2847 REMARK 3 L33: 2.0062 L12: -0.0560 REMARK 3 L13: -0.3773 L23: 0.7328 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: 0.1752 S13: -0.0571 REMARK 3 S21: 0.0733 S22: -0.0129 S23: -0.0309 REMARK 3 S31: 0.3234 S32: 0.1714 S33: -0.0345 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 5 THROUGH 412 OR REMARK 3 RESID 550 THROUGH 502)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 5 THROUGH 412 OR REMARK 3 RESID 550 THROUGH 502)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'B' REMARK 3 SELECTION : (CHAIN 'D' AND RESID 1 THROUGH 125) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23194 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 49.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 63.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, 50 MM MAGNESIUM ACETATE, REMARK 280 0.1% BENZAMIDINE, 40% (V/V) PEG400, 1 MM URACIL, PH 8.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 VAL A 417 REMARK 465 VAL A 418 REMARK 465 LEU A 419 REMARK 465 ASP A 420 REMARK 465 ALA A 421 REMARK 465 GLU A 422 REMARK 465 ASP A 423 REMARK 465 ALA A 424 REMARK 465 ASP A 425 REMARK 465 ILE A 426 REMARK 465 THR A 427 REMARK 465 ASP A 428 REMARK 465 LYS A 429 REMARK 465 ALA A 430 REMARK 465 LEU A 431 REMARK 465 GLU A 432 REMARK 465 VAL A 433 REMARK 465 LEU A 434 REMARK 465 PHE A 435 REMARK 465 GLN A 436 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 126 REMARK 465 ARG B 127 REMARK 465 ALA B 128 REMARK 465 GLY B 129 REMARK 465 GLU B 130 REMARK 465 GLN B 131 REMARK 465 LYS B 132 REMARK 465 LEU B 133 REMARK 465 ILE B 134 REMARK 465 SER B 135 REMARK 465 GLU B 136 REMARK 465 GLU B 137 REMARK 465 ASP B 138 REMARK 465 LEU B 139 REMARK 465 ASN B 140 REMARK 465 SER B 141 REMARK 465 ALA B 142 REMARK 465 VAL B 143 REMARK 465 ASP B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 ARG C 3 REMARK 465 ARG C 4 REMARK 465 ARG C 413 REMARK 465 PRO C 414 REMARK 465 GLU C 415 REMARK 465 GLU C 416 REMARK 465 VAL C 417 REMARK 465 VAL C 418 REMARK 465 LEU C 419 REMARK 465 ASP C 420 REMARK 465 ALA C 421 REMARK 465 GLU C 422 REMARK 465 ASP C 423 REMARK 465 ALA C 424 REMARK 465 ASP C 425 REMARK 465 ILE C 426 REMARK 465 THR C 427 REMARK 465 ASP C 428 REMARK 465 LYS C 429 REMARK 465 ALA C 430 REMARK 465 LEU C 431 REMARK 465 GLU C 432 REMARK 465 VAL C 433 REMARK 465 LEU C 434 REMARK 465 PHE C 435 REMARK 465 GLN C 436 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 SER D -1 REMARK 465 GLY D 126 REMARK 465 ARG D 127 REMARK 465 ALA D 128 REMARK 465 GLY D 129 REMARK 465 GLU D 130 REMARK 465 GLN D 131 REMARK 465 LYS D 132 REMARK 465 LEU D 133 REMARK 465 ILE D 134 REMARK 465 SER D 135 REMARK 465 GLU D 136 REMARK 465 GLU D 137 REMARK 465 ASP D 138 REMARK 465 LEU D 139 REMARK 465 ASN D 140 REMARK 465 SER D 141 REMARK 465 ALA D 142 REMARK 465 VAL D 143 REMARK 465 ASP D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 149 -131.79 -85.79 REMARK 500 ASP A 256 88.02 -64.39 REMARK 500 LYS A 357 60.27 60.85 REMARK 500 PRO B 41 102.41 -58.87 REMARK 500 TYR B 100 -160.65 -108.75 REMARK 500 ALA C 149 -133.76 -86.66 REMARK 500 ASP C 256 88.46 -63.56 REMARK 500 PRO D 41 102.80 -59.48 REMARK 500 TYR D 100 -160.61 -109.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8OMZ RELATED DB: PDB REMARK 900 8OMZ CONTAINS THE SAME STRUCTURE WITHOUT LIGAND DBREF 8OO1 A 2 429 UNP P0AGM8 URAA_ECO57 2 429 DBREF 8OO1 B -3 150 PDB 8OO1 8OO1 -3 150 DBREF 8OO1 C 2 429 UNP P0AGM8 URAA_ECO57 2 429 DBREF 8OO1 D -3 150 PDB 8OO1 8OO1 -3 150 SEQADV 8OO1 MET A 0 UNP P0AGM8 INITIATING METHIONINE SEQADV 8OO1 SER A 1 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 PRO A 320 UNP P0AGM8 GLY 320 ENGINEERED MUTATION SEQADV 8OO1 ALA A 430 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 LEU A 431 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 GLU A 432 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 VAL A 433 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 LEU A 434 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 PHE A 435 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 GLN A 436 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 MET C 0 UNP P0AGM8 INITIATING METHIONINE SEQADV 8OO1 SER C 1 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 PRO C 320 UNP P0AGM8 GLY 320 ENGINEERED MUTATION SEQADV 8OO1 ALA C 430 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 LEU C 431 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 GLU C 432 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 VAL C 433 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 LEU C 434 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 PHE C 435 UNP P0AGM8 EXPRESSION TAG SEQADV 8OO1 GLN C 436 UNP P0AGM8 EXPRESSION TAG SEQRES 1 A 437 MET SER THR ARG ARG ALA ILE GLY VAL SER GLU ARG PRO SEQRES 2 A 437 PRO LEU LEU GLN THR ILE PRO LEU SER LEU GLN HIS LEU SEQRES 3 A 437 PHE ALA MET PHE GLY ALA THR VAL LEU VAL PRO VAL LEU SEQRES 4 A 437 PHE HIS ILE ASN PRO ALA THR VAL LEU LEU PHE ASN GLY SEQRES 5 A 437 ILE GLY THR LEU LEU TYR LEU PHE ILE CYS LYS GLY LYS SEQRES 6 A 437 ILE PRO ALA TYR LEU GLY SER SER PHE ALA PHE ILE SER SEQRES 7 A 437 PRO VAL LEU LEU LEU LEU PRO LEU GLY TYR GLU VAL ALA SEQRES 8 A 437 LEU GLY GLY PHE ILE MET CYS GLY VAL LEU PHE CYS LEU SEQRES 9 A 437 VAL SER PHE ILE VAL LYS LYS ALA GLY THR GLY TRP LEU SEQRES 10 A 437 ASP VAL LEU PHE PRO PRO ALA ALA MET GLY ALA ILE VAL SEQRES 11 A 437 ALA VAL ILE GLY LEU GLU LEU ALA GLY VAL ALA ALA GLY SEQRES 12 A 437 MET ALA GLY LEU LEU PRO ALA GLU GLY GLN THR PRO ASP SEQRES 13 A 437 SER LYS THR ILE ILE ILE SER ILE THR THR LEU ALA VAL SEQRES 14 A 437 THR VAL LEU GLY SER VAL LEU PHE ARG GLY PHE LEU ALA SEQRES 15 A 437 ILE ILE PRO ILE LEU ILE GLY VAL LEU VAL GLY TYR ALA SEQRES 16 A 437 LEU SER PHE ALA MET GLY ILE VAL ASP THR THR PRO ILE SEQRES 17 A 437 ILE ASN ALA HIS TRP PHE ALA LEU PRO THR LEU TYR THR SEQRES 18 A 437 PRO ARG PHE GLU TRP PHE ALA ILE LEU THR ILE LEU PRO SEQRES 19 A 437 ALA ALA LEU VAL VAL ILE ALA GLU HIS VAL GLY HIS LEU SEQRES 20 A 437 VAL VAL THR ALA ASN ILE VAL LYS LYS ASP LEU LEU ARG SEQRES 21 A 437 ASP PRO GLY LEU HIS ARG SER MET PHE ALA ASN GLY LEU SEQRES 22 A 437 SER THR VAL ILE SER GLY PHE PHE GLY SER THR PRO ASN SEQRES 23 A 437 THR THR TYR GLY GLU ASN ILE GLY VAL MET ALA ILE THR SEQRES 24 A 437 ARG VAL TYR SER THR TRP VAL ILE GLY GLY ALA ALA ILE SEQRES 25 A 437 PHE ALA ILE LEU LEU SER CYS VAL PRO LYS LEU ALA ALA SEQRES 26 A 437 ALA ILE GLN MET ILE PRO LEU PRO VAL MET GLY GLY VAL SEQRES 27 A 437 SER LEU LEU LEU TYR GLY VAL ILE GLY ALA SER GLY ILE SEQRES 28 A 437 ARG VAL LEU ILE GLU SER LYS VAL ASP TYR ASN LYS ALA SEQRES 29 A 437 GLN ASN LEU ILE LEU THR SER VAL ILE LEU ILE ILE GLY SEQRES 30 A 437 VAL SER GLY ALA LYS VAL ASN ILE GLY ALA ALA GLU LEU SEQRES 31 A 437 LYS GLY MET ALA LEU ALA THR ILE VAL GLY ILE GLY LEU SEQRES 32 A 437 SER LEU ILE PHE LYS LEU ILE SER VAL LEU ARG PRO GLU SEQRES 33 A 437 GLU VAL VAL LEU ASP ALA GLU ASP ALA ASP ILE THR ASP SEQRES 34 A 437 LYS ALA LEU GLU VAL LEU PHE GLN SEQRES 1 B 154 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 B 154 GLY SER VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 B 154 ALA ALA SER GLY ASN ILE ALA TYR ILE HIS TYR LEU GLY SEQRES 4 B 154 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SEQRES 5 B 154 ALA ALA LEU SER THR THR LEU GLY ASN THR TYR TYR ALA SEQRES 6 B 154 ASP SER VAL LYS GLY ARG PHE THR VAL SER LEU ASP ASN SEQRES 7 B 154 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 B 154 PRO GLU ASP THR ALA LEU TYR TYR CYS ALA ALA ALA TYR SEQRES 9 B 154 PHE GLY TYR SER SER PRO LEU ALA HIS GLU ARG TYR MET SEQRES 10 B 154 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER ALA GLY SEQRES 11 B 154 ARG ALA GLY GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 12 B 154 ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS SEQRES 1 C 437 MET SER THR ARG ARG ALA ILE GLY VAL SER GLU ARG PRO SEQRES 2 C 437 PRO LEU LEU GLN THR ILE PRO LEU SER LEU GLN HIS LEU SEQRES 3 C 437 PHE ALA MET PHE GLY ALA THR VAL LEU VAL PRO VAL LEU SEQRES 4 C 437 PHE HIS ILE ASN PRO ALA THR VAL LEU LEU PHE ASN GLY SEQRES 5 C 437 ILE GLY THR LEU LEU TYR LEU PHE ILE CYS LYS GLY LYS SEQRES 6 C 437 ILE PRO ALA TYR LEU GLY SER SER PHE ALA PHE ILE SER SEQRES 7 C 437 PRO VAL LEU LEU LEU LEU PRO LEU GLY TYR GLU VAL ALA SEQRES 8 C 437 LEU GLY GLY PHE ILE MET CYS GLY VAL LEU PHE CYS LEU SEQRES 9 C 437 VAL SER PHE ILE VAL LYS LYS ALA GLY THR GLY TRP LEU SEQRES 10 C 437 ASP VAL LEU PHE PRO PRO ALA ALA MET GLY ALA ILE VAL SEQRES 11 C 437 ALA VAL ILE GLY LEU GLU LEU ALA GLY VAL ALA ALA GLY SEQRES 12 C 437 MET ALA GLY LEU LEU PRO ALA GLU GLY GLN THR PRO ASP SEQRES 13 C 437 SER LYS THR ILE ILE ILE SER ILE THR THR LEU ALA VAL SEQRES 14 C 437 THR VAL LEU GLY SER VAL LEU PHE ARG GLY PHE LEU ALA SEQRES 15 C 437 ILE ILE PRO ILE LEU ILE GLY VAL LEU VAL GLY TYR ALA SEQRES 16 C 437 LEU SER PHE ALA MET GLY ILE VAL ASP THR THR PRO ILE SEQRES 17 C 437 ILE ASN ALA HIS TRP PHE ALA LEU PRO THR LEU TYR THR SEQRES 18 C 437 PRO ARG PHE GLU TRP PHE ALA ILE LEU THR ILE LEU PRO SEQRES 19 C 437 ALA ALA LEU VAL VAL ILE ALA GLU HIS VAL GLY HIS LEU SEQRES 20 C 437 VAL VAL THR ALA ASN ILE VAL LYS LYS ASP LEU LEU ARG SEQRES 21 C 437 ASP PRO GLY LEU HIS ARG SER MET PHE ALA ASN GLY LEU SEQRES 22 C 437 SER THR VAL ILE SER GLY PHE PHE GLY SER THR PRO ASN SEQRES 23 C 437 THR THR TYR GLY GLU ASN ILE GLY VAL MET ALA ILE THR SEQRES 24 C 437 ARG VAL TYR SER THR TRP VAL ILE GLY GLY ALA ALA ILE SEQRES 25 C 437 PHE ALA ILE LEU LEU SER CYS VAL PRO LYS LEU ALA ALA SEQRES 26 C 437 ALA ILE GLN MET ILE PRO LEU PRO VAL MET GLY GLY VAL SEQRES 27 C 437 SER LEU LEU LEU TYR GLY VAL ILE GLY ALA SER GLY ILE SEQRES 28 C 437 ARG VAL LEU ILE GLU SER LYS VAL ASP TYR ASN LYS ALA SEQRES 29 C 437 GLN ASN LEU ILE LEU THR SER VAL ILE LEU ILE ILE GLY SEQRES 30 C 437 VAL SER GLY ALA LYS VAL ASN ILE GLY ALA ALA GLU LEU SEQRES 31 C 437 LYS GLY MET ALA LEU ALA THR ILE VAL GLY ILE GLY LEU SEQRES 32 C 437 SER LEU ILE PHE LYS LEU ILE SER VAL LEU ARG PRO GLU SEQRES 33 C 437 GLU VAL VAL LEU ASP ALA GLU ASP ALA ASP ILE THR ASP SEQRES 34 C 437 LYS ALA LEU GLU VAL LEU PHE GLN SEQRES 1 D 154 GLY SER SER SER GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 D 154 GLY SER VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 D 154 ALA ALA SER GLY ASN ILE ALA TYR ILE HIS TYR LEU GLY SEQRES 4 D 154 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SEQRES 5 D 154 ALA ALA LEU SER THR THR LEU GLY ASN THR TYR TYR ALA SEQRES 6 D 154 ASP SER VAL LYS GLY ARG PHE THR VAL SER LEU ASP ASN SEQRES 7 D 154 ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 8 D 154 PRO GLU ASP THR ALA LEU TYR TYR CYS ALA ALA ALA TYR SEQRES 9 D 154 PHE GLY TYR SER SER PRO LEU ALA HIS GLU ARG TYR MET SEQRES 10 D 154 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER ALA GLY SEQRES 11 D 154 ARG ALA GLY GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 12 D 154 ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS HET 1PE A 501 16 HET BNG A 502 21 HET BNG A 503 21 HET URA A 504 8 HET DMU B 201 33 HET BNG C 501 21 HET BNG C 502 21 HET BNG C 503 21 HET URA C 504 8 HET DMU D 201 33 HET 1PE D 202 16 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM URA URACIL HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETSYN 1PE PEG400 HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE HETSYN DMU DECYLMALTOSIDE FORMUL 5 1PE 2(C10 H22 O6) FORMUL 6 BNG 5(C15 H30 O6) FORMUL 8 URA 2(C4 H4 N2 O2) FORMUL 9 DMU 2(C22 H42 O11) HELIX 1 AA1 GLN A 16 PHE A 39 1 24 HELIX 2 AA2 ASN A 42 CYS A 61 1 20 HELIX 3 AA3 PHE A 75 LEU A 81 1 7 HELIX 4 AA4 LEU A 82 LEU A 85 5 4 HELIX 5 AA5 GLY A 86 GLY A 112 1 27 HELIX 6 AA6 GLY A 114 PHE A 120 1 7 HELIX 7 AA7 PRO A 121 ALA A 144 1 24 HELIX 8 AA8 ASP A 155 PHE A 176 1 22 HELIX 9 AA9 PRO A 184 GLY A 200 1 17 HELIX 10 AB1 THR A 204 ALA A 210 1 7 HELIX 11 AB2 GLU A 224 VAL A 253 1 30 HELIX 12 AB3 GLY A 262 PHE A 279 1 18 HELIX 13 AB4 TYR A 288 ARG A 299 1 12 HELIX 14 AB5 SER A 302 CYS A 318 1 17 HELIX 15 AB6 VAL A 319 MET A 328 1 10 HELIX 16 AB7 PRO A 330 SER A 356 1 27 HELIX 17 AB8 LYS A 362 GLY A 379 1 18 HELIX 18 AB9 GLY A 391 LEU A 412 1 22 HELIX 19 AC1 LYS B 87 THR B 91 5 5 HELIX 20 AC2 GLN C 16 VAL C 33 1 18 HELIX 21 AC3 VAL C 33 PHE C 39 1 7 HELIX 22 AC4 ASN C 42 CYS C 61 1 20 HELIX 23 AC5 PHE C 75 LEU C 81 1 7 HELIX 24 AC6 LEU C 82 LEU C 85 5 4 HELIX 25 AC7 GLY C 86 SER C 105 1 20 HELIX 26 AC8 ILE C 107 GLY C 112 1 6 HELIX 27 AC9 GLY C 114 PHE C 120 1 7 HELIX 28 AD1 PRO C 121 GLY C 145 1 25 HELIX 29 AD2 ASP C 155 PHE C 176 1 22 HELIX 30 AD3 PRO C 184 GLY C 200 1 17 HELIX 31 AD4 THR C 204 ALA C 210 1 7 HELIX 32 AD5 GLU C 224 VAL C 253 1 30 HELIX 33 AD6 GLY C 262 PHE C 279 1 18 HELIX 34 AD7 TYR C 288 ARG C 299 1 12 HELIX 35 AD8 SER C 302 CYS C 318 1 17 HELIX 36 AD9 VAL C 319 MET C 328 1 10 HELIX 37 AE1 PRO C 330 SER C 356 1 27 HELIX 38 AE2 LYS C 362 GLY C 379 1 18 HELIX 39 AE3 GLY C 391 LEU C 412 1 22 HELIX 40 AE4 LYS D 87 THR D 91 5 5 SHEET 1 AA1 2 LEU A 69 SER A 71 0 SHEET 2 AA1 2 ASN A 285 THR A 287 -1 O THR A 286 N GLY A 70 SHEET 1 AA2 2 VAL A 382 ILE A 384 0 SHEET 2 AA2 2 ALA A 387 LEU A 389 -1 O ALA A 387 N ILE A 384 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 SER B 17 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA3 4 THR B 78 ASN B 84 -1 O MET B 83 N LEU B 18 SHEET 4 AA3 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA4 5 THR B 58 TYR B 60 0 SHEET 2 AA4 5 ARG B 45 LEU B 51 -1 N ALA B 50 O TYR B 59 SHEET 3 AA4 5 TYR B 33 GLN B 39 -1 N ARG B 38 O GLU B 46 SHEET 4 AA4 5 ALA B 92 ALA B 99 -1 O TYR B 95 N PHE B 37 SHEET 5 AA4 5 TYR B 112 TRP B 115 -1 O TYR B 114 N ALA B 98 SHEET 1 AA5 5 THR B 58 TYR B 60 0 SHEET 2 AA5 5 ARG B 45 LEU B 51 -1 N ALA B 50 O TYR B 59 SHEET 3 AA5 5 TYR B 33 GLN B 39 -1 N ARG B 38 O GLU B 46 SHEET 4 AA5 5 ALA B 92 ALA B 99 -1 O TYR B 95 N PHE B 37 SHEET 5 AA5 5 THR B 119 VAL B 121 -1 O VAL B 121 N ALA B 92 SHEET 1 AA6 2 LEU C 69 SER C 71 0 SHEET 2 AA6 2 ASN C 285 THR C 287 -1 O THR C 286 N GLY C 70 SHEET 1 AA7 2 VAL C 382 ILE C 384 0 SHEET 2 AA7 2 ALA C 387 LEU C 389 -1 O ALA C 387 N ILE C 384 SHEET 1 AA8 4 GLN D 3 GLY D 8 0 SHEET 2 AA8 4 SER D 17 SER D 25 -1 O SER D 25 N GLN D 3 SHEET 3 AA8 4 THR D 78 ASN D 84 -1 O MET D 83 N LEU D 18 SHEET 4 AA8 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA9 6 GLY D 10 VAL D 12 0 SHEET 2 AA9 6 THR D 119 VAL D 123 1 O GLN D 120 N GLY D 10 SHEET 3 AA9 6 ALA D 92 ALA D 99 -1 N TYR D 94 O THR D 119 SHEET 4 AA9 6 TYR D 33 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 AA9 6 ARG D 45 LEU D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 AA9 6 THR D 58 TYR D 60 -1 O TYR D 59 N ALA D 50 SHEET 1 AB1 4 GLY D 10 VAL D 12 0 SHEET 2 AB1 4 THR D 119 VAL D 123 1 O GLN D 120 N GLY D 10 SHEET 3 AB1 4 ALA D 92 ALA D 99 -1 N TYR D 94 O THR D 119 SHEET 4 AB1 4 TYR D 112 TRP D 115 -1 O MET D 113 N ALA D 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 2 CYS D 22 CYS D 96 1555 1555 2.03 CISPEP 1 ASP A 260 PRO A 261 0 1.82 CISPEP 2 ASP C 260 PRO C 261 0 1.30 CRYST1 86.250 116.820 94.300 90.00 100.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011594 0.000000 0.002146 0.00000 SCALE2 0.000000 0.008560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010785 0.00000