HEADER IMMUNE SYSTEM 07-APR-23 8OPI TITLE VHH Z70 MUTANT 1 IN INTERACTION WITH PHF6 TAU PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH Z70 MUTANT 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHF6 TAU PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS VHH, NANOBODY, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.DUPRE,J.MORTELECQUE,M.NGUYEN,X.HANOULLE,I.LANDRIEU REVDAT 4 09-OCT-24 8OPI 1 REMARK REVDAT 3 24-APR-24 8OPI 1 JRNL REVDAT 2 17-APR-24 8OPI 1 JRNL REVDAT 1 31-MAY-23 8OPI 0 JRNL AUTH J.MORTELECQUE,O.ZEJNELI,S.BEGARD,M.C.SIMOES,L.ELHAJJAR, JRNL AUTH 2 M.NGUYEN,F.X.CANTRELLE,X.HANOULLE,J.C.RAIN,M.COLIN, JRNL AUTH 3 C.M.GOMES,L.BUEE,I.LANDRIEU,C.DANIS,E.DUPRE JRNL TITL A SELECTION AND OPTIMIZATION STRATEGY FOR SINGLE-DOMAIN JRNL TITL 2 ANTIBODIES TARGETING THE PHF6 LINEAR PEPTIDE WITHIN THE TAU JRNL TITL 3 INTRINSICALLY DISORDERED PROTEIN. JRNL REF J.BIOL.CHEM. V. 300 07163 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38484799 JRNL DOI 10.1016/J.JBC.2024.107163 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00200 REMARK 3 B22 (A**2) : 1.00200 REMARK 3 B33 (A**2) : -3.25100 REMARK 3 B12 (A**2) : 0.50100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 959 ; 0.011 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 857 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1302 ; 1.827 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1973 ; 0.610 ; 1.562 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.902 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ;17.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 145 ;13.461 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 141 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1157 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 239 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 140 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 59 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 480 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 66 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 499 ; 4.195 ; 3.208 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 499 ; 4.196 ; 3.207 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 621 ; 5.781 ; 5.694 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 622 ; 5.779 ; 5.698 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 460 ; 4.924 ; 3.518 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 461 ; 4.919 ; 3.522 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 676 ; 7.249 ; 6.224 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 677 ; 7.246 ; 6.227 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8OPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 44.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.50 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 44.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 30.30 REMARK 200 R MERGE FOR SHELL (I) : 0.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 4.25% REMARK 280 ISOPROPANOL, 15% LLYCEROL, PH 7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.60733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.80367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.70550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 5.90183 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.50917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.60733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 11.80367 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 5.90183 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 17.70550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.50917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 SER A 112 REMARK 465 TYR A 113 REMARK 465 GLY A 114 REMARK 465 GLU A 115 REMARK 465 ALA A 125 REMARK 465 ALA A 126 REMARK 465 ALA A 127 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 GLY B 303 REMARK 465 LYS B 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 PHE A 110 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 LYS B 313 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 63 H ILE A 73 1.20 REMARK 500 HG1 THR A 94 H VAL A 122 1.35 REMARK 500 HH TYR A 83 O HOH A 201 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG SER A 9 H ALA A 25 7554 1.09 REMARK 500 O HOH A 204 O HOH A 204 12554 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 99 CB - CA - C ANGL. DEV. = -22.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -153.62 -74.34 REMARK 500 SER A 59 -153.98 -73.36 REMARK 500 ALA A 95 169.63 176.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 75 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8OP0 RELATED DB: PDB REMARK 900 8OP0 CONTAINS ANOTHER VHH MUTANT DBREF 8OPI A -1 127 PDB 8OPI 8OPI -1 127 DBREF 8OPI B 301 314 PDB 8OPI 8OPI 301 314 SEQRES 1 A 129 GLY ALA MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY SEQRES 2 A 129 VAL PHE VAL GLN SER GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 A 129 ALA ALA SER GLY ALA THR SER THR PHE ASP GLY MET GLY SEQRES 4 A 129 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL SEQRES 5 A 129 SER ALA ILE SER TYR GLU GLN GLY SER TYR THR TYR TYR SEQRES 6 A 129 ALA ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP SEQRES 7 A 129 ASN SER LYS ASN MET VAL TYR LEU GLN MET ASN SER LEU SEQRES 8 A 129 ARG ALA GLU ASP THR ALA THR TYR TYR CYS ALA PRO ALA SEQRES 9 A 129 TYR GLU GLY ASP LEU TYR ALA PHE ASP SER TYR GLY GLU SEQRES 10 A 129 GLN GLY THR GLN VAL THR VAL SER SER ALA ALA ALA SEQRES 1 B 14 PRO GLY GLY GLY SER VAL GLN ILE VAL TYR LYS PRO LYS SEQRES 2 B 14 LYS FORMUL 3 HOH *89(H2 O) HELIX 1 AA1 ASP A 65 LYS A 68 5 4 HELIX 2 AA2 ASN A 77 LYS A 79 5 3 HELIX 3 AA3 ARG A 90 THR A 94 5 5 SHEET 1 AA1 6 VAL A 12 GLN A 15 0 SHEET 2 AA1 6 THR A 118 SER A 123 1 O THR A 121 N VAL A 12 SHEET 3 AA1 6 ALA A 95 TYR A 103 -1 N TYR A 97 O THR A 118 SHEET 4 AA1 6 GLY A 35 GLN A 41 -1 N PHE A 39 O TYR A 98 SHEET 5 AA1 6 GLU A 48 SER A 54 -1 O ILE A 53 N MET A 36 SHEET 6 AA1 6 THR A 61 TYR A 63 -1 O TYR A 62 N ALA A 52 SHEET 1 AA2 5 VAL A 12 GLN A 15 0 SHEET 2 AA2 5 THR A 118 SER A 123 1 O THR A 121 N VAL A 12 SHEET 3 AA2 5 ALA A 95 TYR A 103 -1 N TYR A 97 O THR A 118 SHEET 4 AA2 5 ASP A 106 ALA A 109 -1 O TYR A 108 N PRO A 101 SHEET 5 AA2 5 GLN B 307 VAL B 309 -1 O GLN B 307 N ALA A 109 SHEET 1 AA3 3 LEU A 20 ALA A 25 0 SHEET 2 AA3 3 MET A 81 MET A 86 -1 O MET A 86 N LEU A 20 SHEET 3 AA3 3 PHE A 71 ASP A 76 -1 N ASP A 76 O MET A 81 SSBOND 1 CYS A 24 CYS A 99 1555 1555 1.98 CRYST1 135.165 135.165 35.411 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007398 0.004271 0.000000 0.00000 SCALE2 0.000000 0.008543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028240 0.00000 TER 1681 SER A 124 TER 1834 LYS B 313 HETATM 1835 O HOH A 201 -31.981 -35.657 -16.706 1.00 52.03 O0 HETATM 1836 O HOH A 202 -45.698 -40.873 -10.633 1.00 51.83 O0 HETATM 1837 O HOH A 203 -33.820 -29.392 -11.380 1.00 48.90 O0 HETATM 1838 O HOH A 204 -45.288 -26.372 -3.685 1.00 49.27 O0 HETATM 1839 O HOH A 205 -30.533 -49.471 4.620 1.00 51.44 O0 HETATM 1840 O HOH A 206 -28.603 -46.879 11.141 1.00 46.14 O0 HETATM 1841 O HOH A 207 -27.832 -43.461 9.175 1.00 42.19 O0 HETATM 1842 O HOH A 208 -33.103 -42.255 8.120 1.00 42.34 O0 HETATM 1843 O HOH A 209 -33.041 -50.648 2.901 1.00 47.08 O0 HETATM 1844 O HOH A 210 -38.198 -26.635 -2.714 1.00 32.64 O0 HETATM 1845 O HOH A 211 -52.027 -40.393 -0.284 1.00 33.79 O0 HETATM 1846 O HOH A 212 -34.098 -38.333 10.732 1.00 47.77 O0 HETATM 1847 O HOH A 213 -49.547 -33.160 -9.709 1.00 31.74 O0 HETATM 1848 O HOH A 214 -41.115 -26.858 -5.679 1.00 44.99 O0 HETATM 1849 O HOH A 215 -35.365 -27.839 1.657 1.00 40.72 O0 HETATM 1850 O HOH A 216 -19.103 -31.230 8.112 1.00 55.65 O0 HETATM 1851 O HOH A 217 -25.782 -56.460 0.187 1.00 55.38 O0 HETATM 1852 O HOH A 218 -31.924 -41.936 -12.601 1.00 54.99 O0 HETATM 1853 O HOH A 219 -38.779 -50.467 0.852 1.00 51.80 O0 HETATM 1854 O HOH A 220 -50.381 -38.427 5.100 1.00 34.01 O0 HETATM 1855 O HOH A 221 -36.807 -34.581 -23.079 1.00 40.27 O0 HETATM 1856 O HOH A 222 -28.312 -48.441 3.763 1.00 48.58 O0 HETATM 1857 O HOH A 223 -41.697 -45.151 9.310 1.00 54.39 O0 HETATM 1858 O HOH A 224 -38.688 -27.279 -5.655 1.00 49.93 O0 HETATM 1859 O HOH A 225 -25.988 -51.276 -3.391 1.00 57.52 O0 HETATM 1860 O HOH A 226 -22.160 -46.485 0.564 1.00 39.48 O0 HETATM 1861 O HOH A 227 -30.800 -36.431 8.340 1.00 35.05 O0 HETATM 1862 O HOH A 228 -30.494 -41.667 7.176 1.00 34.62 O0 HETATM 1863 O HOH A 229 -30.413 -28.356 -1.786 1.00 36.88 O0 HETATM 1864 O HOH A 230 -29.088 -51.106 0.280 1.00 50.83 O0 HETATM 1865 O HOH A 231 -31.167 -51.529 -2.760 1.00 53.06 O0 HETATM 1866 O HOH A 232 -41.922 -26.761 0.386 1.00 49.26 O0 HETATM 1867 O HOH A 233 -33.247 -30.433 -7.205 1.00 29.54 O0 HETATM 1868 O HOH A 234 -30.480 -34.569 10.350 1.00 49.00 O0 HETATM 1869 O HOH A 235 -44.606 -28.547 -6.673 1.00 43.06 O0 HETATM 1870 O HOH A 236 -34.264 -44.893 8.076 1.00 32.35 O0 HETATM 1871 O HOH A 237 -28.729 -47.088 -7.522 1.00 28.27 O0 HETATM 1872 O HOH A 238 -39.568 -38.224 7.510 1.00 41.52 O0 HETATM 1873 O HOH A 239 -32.489 -44.808 -5.738 1.00 29.71 O0 HETATM 1874 O HOH A 240 -51.158 -32.542 -0.761 1.00 49.53 O0 HETATM 1875 O HOH A 241 -24.952 -30.569 7.639 1.00 47.37 O0 HETATM 1876 O HOH A 242 -19.180 -39.095 -3.905 1.00 25.42 O0 HETATM 1877 O HOH A 243 -40.287 -49.186 7.666 1.00 45.12 O0 HETATM 1878 O HOH A 244 -23.916 -32.073 -6.061 1.00 50.78 O0 HETATM 1879 O HOH A 245 -32.395 -42.203 -6.356 1.00 34.02 O0 HETATM 1880 O HOH A 246 -20.830 -36.885 -4.457 1.00 33.95 O0 HETATM 1881 O HOH A 247 -41.144 -40.752 7.780 1.00 34.85 O0 HETATM 1882 O HOH A 248 -33.044 -31.174 -16.164 1.00 48.00 O0 HETATM 1883 O HOH A 249 -47.770 -35.117 -15.677 1.00 51.37 O0 HETATM 1884 O HOH A 250 -27.150 -26.467 -4.795 1.00 46.31 O0 HETATM 1885 O HOH A 251 -36.585 -46.085 12.931 1.00 67.86 O0 HETATM 1886 O HOH A 252 -51.967 -37.150 2.009 1.00 46.60 O0 HETATM 1887 O HOH A 253 -31.888 -30.121 7.770 1.00 41.62 O0 HETATM 1888 O HOH A 254 -39.058 -28.131 -10.181 1.00 34.20 O0 HETATM 1889 O HOH A 255 -42.657 -29.959 3.818 1.00 31.67 O0 HETATM 1890 O HOH A 256 -17.171 -36.221 -0.748 1.00 38.53 O0 HETATM 1891 O HOH A 257 -40.817 -34.370 9.203 1.00 38.67 O0 HETATM 1892 O HOH A 258 -22.760 -29.232 0.251 1.00 36.92 O0 HETATM 1893 O HOH A 259 -55.302 -29.092 -9.703 1.00 48.39 O0 HETATM 1894 O HOH A 260 -37.677 -35.423 10.070 1.00 40.98 O0 HETATM 1895 O HOH A 261 -22.763 -31.410 7.482 1.00 49.54 O0 HETATM 1896 O HOH A 262 -28.444 -51.292 -4.180 1.00 50.78 O0 HETATM 1897 O HOH A 263 -48.372 -27.736 -14.235 1.00 49.56 O0 HETATM 1898 O HOH A 264 -35.051 -46.326 -6.372 1.00 42.94 O0 HETATM 1899 O HOH A 265 -54.396 -38.337 -9.793 1.00 53.90 O0 HETATM 1900 O HOH A 266 -51.401 -31.886 -8.189 1.00 43.80 O0 HETATM 1901 O HOH A 267 -54.645 -39.661 -0.065 1.00 47.54 O0 HETATM 1902 O HOH A 268 -29.027 -26.191 0.086 1.00 51.65 O0 HETATM 1903 O HOH A 269 -52.513 -32.684 1.588 1.00 66.58 O0 HETATM 1904 O HOH A 270 -30.190 -26.858 -4.235 1.00 56.52 O0 HETATM 1905 O HOH A 271 -26.290 -46.956 3.750 1.00 52.78 O0 HETATM 1906 O HOH A 272 -30.301 -32.382 -12.981 1.00 49.29 O0 HETATM 1907 O HOH A 273 -31.085 -30.871 -8.762 1.00 45.80 O0 HETATM 1908 O HOH A 274 -22.311 -28.367 5.858 1.00 56.72 O0 HETATM 1909 O HOH A 275 -50.632 -33.803 -11.868 1.00 48.95 O0 HETATM 1910 O HOH A 276 -31.405 -51.465 5.774 1.00 66.25 O0 HETATM 1911 O HOH A 277 -41.703 -27.356 3.254 1.00 59.84 O0 HETATM 1912 O HOH A 278 -32.413 -27.926 -7.180 1.00 52.47 O0 HETATM 1913 O HOH A 279 -17.039 -33.880 -0.534 1.00 61.65 O0 HETATM 1914 O HOH A 280 -46.884 -48.830 -8.137 1.00 70.27 O0 HETATM 1915 O HOH A 281 -40.553 -25.737 -1.376 1.00 49.46 O0 HETATM 1916 O HOH A 282 -38.936 -49.761 -3.485 1.00 49.92 O0 HETATM 1917 O HOH A 283 -53.068 -45.536 -4.451 1.00 55.54 O0 HETATM 1918 O HOH B 401 -53.545 -59.041 -1.223 1.00 41.04 O0 HETATM 1919 O HOH B 402 -48.766 -37.812 7.170 1.00 39.21 O0 HETATM 1920 O HOH B 403 -46.819 -54.789 -4.747 1.00 51.08 O0 HETATM 1921 O HOH B 404 -52.829 -55.721 -7.713 1.00 66.54 O0 HETATM 1922 O HOH B 405 -45.415 -39.277 9.228 1.00 47.53 O0 HETATM 1923 O HOH B 406 -41.301 -36.449 7.650 1.00 42.08 O0 CONECT 221 1398 CONECT 222 1399 CONECT 1398 221 CONECT 1399 222 MASTER 396 0 0 3 14 0 0 6 1008 2 4 12 END