HEADER LUMINESCENT PROTEIN 12-APR-23 8OQB TITLE SOLUTION STRUCTURE OF 6XHIS-TAGGED WILD-TYPE GAUSSIA LUCIFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GAUSSIA LUCIFERASE WITH 6XHIS TAG FOR PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GAUSSIA PRINCEPS; SOURCE 3 ORGANISM_TAXID: 148582; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET-29B(+) KEYWDS LUMINESCENCE, LUCIFERASE, COELENTERAZINE OXIDATION, LUMINESCENT KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.M.DIJKEMA,K.TEILUM,A.PRESTEL,J.R.WINTHER REVDAT 1 28-FEB-24 8OQB 0 JRNL AUTH F.M.DIJKEMA,M.I.ESCARPIZO-LORENZANA,M.K.NORDENTOFT,H.C.RABE, JRNL AUTH 2 C.SAHIN,M.LANDREH,R.M.BRANCA,E.S.SORENSEN,B.S.CHRISTENSEN, JRNL AUTH 3 A.PRESTEL,K.TEILUM,J.R.WINTHER JRNL TITL A SUICIDAL AND EXTENSIVELY DISORDERED LUCIFERASE WITH A JRNL TITL 2 BRIGHT LUMINESCENCE JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2023.12.21.572513 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.34, CYANA 3.98.13 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292128260. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 57.6 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM U-N15; U-C13 GAUSSIA REMARK 210 LUCIFERASE, 0.02 % W/V SODIUM REMARK 210 AZIDE, 50 MM SODIUM DIHYDROGEN REMARK 210 PHOSPHATE, 0.125 MM SODIUM REMARK 210 TRIMETHYLSILYLPROPANESULFONATE (D REMARK 210 SS), 7.5 MM SODIUM HYDROXIDE, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D HNCACO; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HN(COCA) REMARK 210 CB; 2D 1H-13C HSQC ALIPHATIC; 2D REMARK 210 1H-13C HSQC AROMATIC; 2D 1H-15N REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.34, CCPNMR ANALYSIS REMARK 210 2.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ASN A 12 REMARK 465 ASN A 13 REMARK 465 GLU A 14 REMARK 465 ASP A 15 REMARK 465 PHE A 16 REMARK 465 ASN A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 PHE A 25 REMARK 465 ALA A 26 REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 ASP A 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 37 80.74 -157.21 REMARK 500 1 LEU A 67 -38.81 -130.44 REMARK 500 1 ARG A 83 -177.19 52.85 REMARK 500 1 TYR A 87 144.01 61.33 REMARK 500 1 SER A 93 117.90 170.79 REMARK 500 1 GLN A 95 105.39 -168.99 REMARK 500 1 ALA A 101 117.07 60.61 REMARK 500 1 CYS A 127 82.60 -69.35 REMARK 500 1 GLN A 153 -167.71 46.82 REMARK 500 1 CYS A 155 -79.88 176.02 REMARK 500 2 LYS A 40 168.01 61.20 REMARK 500 2 LYS A 41 -164.08 50.89 REMARK 500 2 THR A 86 125.13 63.91 REMARK 500 2 CYS A 127 83.39 -67.85 REMARK 500 2 ARG A 154 -95.51 67.12 REMARK 500 2 THR A 157 93.82 39.97 REMARK 500 2 VAL A 166 16.12 56.69 REMARK 500 3 LYS A 41 -157.79 -105.00 REMARK 500 3 TYR A 87 -68.41 -145.69 REMARK 500 3 GLU A 88 -99.88 48.31 REMARK 500 3 ASP A 90 72.06 -108.78 REMARK 500 3 CYS A 127 99.68 -62.12 REMARK 500 3 CYS A 143 32.40 -141.17 REMARK 500 3 ARG A 154 -89.20 71.98 REMARK 500 3 PHE A 158 163.45 59.47 REMARK 500 4 LYS A 40 176.25 55.32 REMARK 500 4 CYS A 143 16.64 59.65 REMARK 500 4 THR A 157 87.52 66.82 REMARK 500 4 LYS A 161 -177.33 51.26 REMARK 500 5 LEU A 67 -33.76 -134.46 REMARK 500 5 GLU A 88 -95.60 52.27 REMARK 500 5 CYS A 127 84.94 -63.01 REMARK 500 5 SER A 144 74.29 81.36 REMARK 500 5 GLN A 153 -169.49 -161.63 REMARK 500 6 PRO A 81 69.73 -67.53 REMARK 500 6 ARG A 83 79.86 60.10 REMARK 500 6 LYS A 91 -49.34 76.08 REMARK 500 6 GLU A 92 22.82 -176.17 REMARK 500 6 GLN A 95 -171.19 57.95 REMARK 500 6 CYS A 127 95.74 -62.81 REMARK 500 6 VAL A 141 58.72 -93.68 REMARK 500 6 PRO A 152 -169.96 -65.82 REMARK 500 6 PHE A 158 -169.35 -122.59 REMARK 500 6 ALA A 159 98.53 69.36 REMARK 500 6 GLN A 165 177.81 57.55 REMARK 500 7 LYS A 40 -87.13 61.11 REMARK 500 7 CYS A 59 157.22 -46.56 REMARK 500 7 CYS A 127 83.74 -64.27 REMARK 500 7 GLN A 153 137.28 -176.06 REMARK 500 7 ARG A 154 -80.82 -163.69 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34803 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF 6XHIS-TAGGED WILD-TYPE GAUSSIA LUCIFERASE DBREF 8OQB A 8 175 UNP Q9BLZ2 Q9BLZ2_9MAXI 18 185 SEQADV 8OQB MET A 1 UNP Q9BLZ2 INITIATING METHIONINE SEQADV 8OQB HIS A 2 UNP Q9BLZ2 EXPRESSION TAG SEQADV 8OQB HIS A 3 UNP Q9BLZ2 EXPRESSION TAG SEQADV 8OQB HIS A 4 UNP Q9BLZ2 EXPRESSION TAG SEQADV 8OQB HIS A 5 UNP Q9BLZ2 EXPRESSION TAG SEQADV 8OQB HIS A 6 UNP Q9BLZ2 EXPRESSION TAG SEQADV 8OQB HIS A 7 UNP Q9BLZ2 EXPRESSION TAG SEQRES 1 A 175 MET HIS HIS HIS HIS HIS HIS LYS PRO THR GLU ASN ASN SEQRES 2 A 175 GLU ASP PHE ASN ILE VAL ALA VAL ALA SER ASN PHE ALA SEQRES 3 A 175 THR THR ASP LEU ASP ALA ASP ARG GLY LYS LEU PRO GLY SEQRES 4 A 175 LYS LYS LEU PRO LEU GLU VAL LEU LYS GLU MET GLU ALA SEQRES 5 A 175 ASN ALA ARG LYS ALA GLY CYS THR ARG GLY CYS LEU ILE SEQRES 6 A 175 CYS LEU SER HIS ILE LYS CYS THR PRO LYS MET LYS LYS SEQRES 7 A 175 PHE ILE PRO GLY ARG CYS HIS THR TYR GLU GLY ASP LYS SEQRES 8 A 175 GLU SER ALA GLN GLY GLY ILE GLY GLU ALA ILE VAL ASP SEQRES 9 A 175 ILE PRO GLU ILE PRO GLY PHE LYS ASP LEU GLU PRO MET SEQRES 10 A 175 GLU GLN PHE ILE ALA GLN VAL ASP LEU CYS VAL ASP CYS SEQRES 11 A 175 THR THR GLY CYS LEU LYS GLY LEU ALA ASN VAL GLN CYS SEQRES 12 A 175 SER ASP LEU LEU LYS LYS TRP LEU PRO GLN ARG CYS ALA SEQRES 13 A 175 THR PHE ALA SER LYS ILE GLN GLY GLN VAL ASP LYS ILE SEQRES 14 A 175 LYS GLY ALA GLY GLY ASP HELIX 1 AA1 LEU A 30 GLY A 35 1 6 HELIX 2 AA2 PRO A 43 GLY A 58 1 16 HELIX 3 AA3 THR A 60 HIS A 69 1 10 HELIX 4 AA4 THR A 73 ILE A 80 1 8 HELIX 5 AA5 GLU A 115 ASP A 125 1 11 HELIX 6 AA6 THR A 131 VAL A 141 1 11 HELIX 7 AA7 SER A 144 LEU A 151 1 8 SSBOND 1 CYS A 59 CYS A 134 1555 1555 2.02 SSBOND 2 CYS A 63 CYS A 66 1555 1555 2.04 SSBOND 3 CYS A 72 CYS A 84 1555 1555 2.02 SSBOND 4 CYS A 127 CYS A 130 1555 1555 2.02 SSBOND 5 CYS A 143 CYS A 155 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1