HEADER TRANSCRIPTION 18-APR-23 8OSB TITLE TWIST1-TCF4-ALX4 COMPLEX ON SPECIFIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (25-MER); COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (25-MER); COMPND 7 CHAIN: W; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HOMEOBOX PROTEIN ARISTALESS-LIKE 4; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: TRANSCRIPTION FACTOR 4; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: TCF-4,CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 19,BHLHB19, COMPND 17 IMMUNOGLOBULIN TRANSCRIPTION FACTOR 2,ITF-2,SL3-3 ENHANCER FACTOR 2, COMPND 18 SEF-2; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: TWIST-RELATED PROTEIN 1; COMPND 22 CHAIN: B; COMPND 23 SYNONYM: CLASS A BASIC HELIX-LOOP-HELIX PROTEIN 38,BHLHA38,H-TWIST; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ALX4, KIAA1788; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: ROSETTA; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: TCF4, BHLHB19, ITF2, SEF2; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: ROSETTA; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 GENE: TWIST1, BHLHA38, TWIST; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 34 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 35 EXPRESSION_SYSTEM_PLASMID: ROSETTA KEYWDS TRANSCRIPTION FACTOR, COMPLEX WITH DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,S.KIM,A.POPOV,J.WYSOCKA,J.TAIPALE REVDAT 3 14-FEB-24 8OSB 1 JRNL REVDAT 2 07-FEB-24 8OSB 1 JRNL REVDAT 1 31-JAN-24 8OSB 0 JRNL AUTH S.KIM,E.MORGUNOVA,S.NAQVI,S.GOOVAERTS,M.BADER,M.KOSKA, JRNL AUTH 2 A.POPOV,C.LUONG,A.POGSON,T.SWIGUT,P.CLAES,J.TAIPALE, JRNL AUTH 3 J.WYSOCKA JRNL TITL DNA-GUIDED TRANSCRIPTION FACTOR COOPERATIVITY SHAPES FACE JRNL TITL 2 AND LIMB MESENCHYME. JRNL REF CELL V. 187 692 2024 JRNL REFN ISSN 1097-4172 JRNL PMID 38262408 JRNL DOI 10.1016/J.CELL.2023.12.032 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.4510 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1592 REMARK 3 NUCLEIC ACID ATOMS : 1025 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -3.50000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.359 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2837 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2209 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3959 ; 1.965 ; 1.699 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5087 ; 1.140 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 7.642 ; 5.575 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.671 ;19.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;24.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;22.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.167 ; 0.232 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2421 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 610 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 756 ; 7.955 ; 8.950 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 755 ; 7.952 ; 8.940 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 942 ;11.738 ;13.438 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 943 ;11.733 ;13.451 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2081 ; 8.531 ; 9.162 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2079 ; 8.522 ; 9.151 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3016 ;13.049 ;13.604 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8869 ;16.646 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8869 ;16.643 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8OSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 47.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.21200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 4.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE BUFFER (PH 7.5), 100 REMARK 280 MM MAGNESIUM ACETATE, 18 % GLYCEROL, 20 % 2-METHYL-2,4- REMARK 280 PENTANEDIOL, 6-7% PEG (MW 8000), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.09633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.19267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.19267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.09633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, W, E, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT W 25 P DT W 25 O5' 0.065 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT X 5 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA X 6 C3' - O3' - P ANGL. DEV. = -8.7 DEGREES REMARK 500 DT X 8 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT X 9 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA X 10 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DA X 11 C3' - O3' - P ANGL. DEV. = -14.2 DEGREES REMARK 500 DA X 13 C3' - O3' - P ANGL. DEV. = -9.1 DEGREES REMARK 500 DC X 15 C3' - O3' - P ANGL. DEV. = -10.3 DEGREES REMARK 500 DG X 17 O3' - P - OP1 ANGL. DEV. = 8.2 DEGREES REMARK 500 DG X 17 C3' - O3' - P ANGL. DEV. = -10.2 DEGREES REMARK 500 DT X 19 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA W 5 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DC W 6 C3' - O3' - P ANGL. DEV. = -14.5 DEGREES REMARK 500 DA W 7 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT W 8 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT W 10 C3' - O3' - P ANGL. DEV. = -7.2 DEGREES REMARK 500 DG W 11 C3' - O3' - P ANGL. DEV. = -12.4 DEGREES REMARK 500 DT W 13 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 DT W 14 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 DT W 15 C3' - O3' - P ANGL. DEV. = -10.7 DEGREES REMARK 500 DA W 21 C3' - O3' - P ANGL. DEV. = -12.2 DEGREES REMARK 500 DC W 23 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 217 156.94 98.04 REMARK 500 THR E 222 138.37 -38.38 REMARK 500 TYR E 238 61.30 -116.37 REMARK 500 ALA E 256 -71.13 -42.93 REMARK 500 ARG A 572 173.97 -51.93 REMARK 500 GLU A 573 -55.26 76.55 REMARK 500 GLN A 601 89.53 -58.25 REMARK 500 VAL A 611 -70.97 -45.46 REMARK 500 ASN B 125 174.65 -56.60 REMARK 500 GLU B 126 -62.77 70.52 REMARK 500 ARG B 132 -53.19 76.52 REMARK 500 LYS B 142 80.26 69.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OSB X 1 25 PDB 8OSB 8OSB 1 25 DBREF 8OSB W 1 25 PDB 8OSB 8OSB 1 25 DBREF 8OSB E 216 277 UNP Q9H161 ALX4_HUMAN 216 277 DBREF 8OSB A 565 624 UNP P15884 ITF2_HUMAN 565 624 DBREF 8OSB B 101 167 UNP Q15672 TWST1_HUMAN 101 167 SEQRES 1 X 25 DA DA DG DG DT DA DA DT DT DA DA DA DA SEQRES 2 X 25 DC DC DA DG DA DT DG DT DG DT DT DT SEQRES 1 W 25 DA DA DA DC DA DC DA DT DC DT DG DG DT SEQRES 2 W 25 DT DT DT DA DA DT DT DA DC DC DT DT SEQRES 1 E 62 ARG ASN ARG THR THR PHE THR SER TYR GLN LEU GLU GLU SEQRES 2 E 62 LEU GLU LYS VAL PHE GLN LYS THR HIS TYR PRO ASP VAL SEQRES 3 E 62 TYR ALA ARG GLU GLN LEU ALA MET ARG THR ASP LEU THR SEQRES 4 E 62 GLU ALA ARG VAL GLN VAL TRP PHE GLN ASN ARG ARG ALA SEQRES 5 E 62 LYS TRP ARG LYS ARG GLU ARG PHE GLY GLN SEQRES 1 A 60 ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU ARG VAL SEQRES 2 A 60 ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY ARG MET SEQRES 3 A 60 VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN THR LYS SEQRES 4 A 60 LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE LEU SER SEQRES 5 A 60 LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 B 67 GLN SER TYR GLU GLU LEU GLN THR GLN ARG VAL MET ALA SEQRES 2 B 67 ASN VAL ARG GLU ARG GLN ARG THR GLN SER LEU ASN GLU SEQRES 3 B 67 ALA PHE ALA ALA LEU ARG LYS ILE ILE PRO THR LEU PRO SEQRES 4 B 67 SER ASP LYS LEU SER LYS ILE GLN THR LEU LYS LEU ALA SEQRES 5 B 67 ALA ARG TYR ILE ASP PHE LEU TYR GLN VAL LEU GLN SER SEQRES 6 B 67 ASP GLU FORMUL 6 HOH *27(H2 O) HELIX 1 AA1 THR E 222 THR E 236 1 15 HELIX 2 AA2 ASP E 240 THR E 251 1 12 HELIX 3 AA3 THR E 254 PHE E 275 1 22 HELIX 4 AA4 ARG A 566 LEU A 595 1 30 HELIX 5 AA5 THR A 602 ARG A 624 1 23 HELIX 6 AA6 TYR B 103 ILE B 134 1 32 HELIX 7 AA7 SER B 144 SER B 165 1 22 CRYST1 60.589 60.589 237.289 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016505 0.009529 0.000000 0.00000 SCALE2 0.000000 0.019058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004214 0.00000 MASTER 340 0 0 7 0 0 0 6 2644 5 0 20 END