HEADER CHAPERONE 21-APR-23 8OTK TITLE STRUCTURE OF CLPC Q11P N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC / COMPND 3 NEGATIVE REGULATOR OF TIC COMPETENCE CLCC/MECB; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_1475; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPORULATION, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR N.J.EVANS,R.L.ISAACSON,A.H.CAMP REVDAT 1 01-MAY-24 8OTK 0 JRNL AUTH N.J.EVANS,R.L.ISAACSON,A.H.CAMP JRNL TITL A NOVEL CLPC-CLPP ADAPTOR PROTEIN THAT FUNCTIONS IN THE JRNL TITL 2 DEVELOPING BACILLUS SUBTILIS SPORE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 45832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3100 - 2.9000 1.00 2940 108 0.1554 0.1758 REMARK 3 2 2.9000 - 2.3000 1.00 2815 143 0.1489 0.1685 REMARK 3 3 2.3000 - 2.0100 0.99 2780 155 0.1248 0.1524 REMARK 3 4 2.0100 - 1.8300 0.99 2779 162 0.1256 0.1437 REMARK 3 5 1.8300 - 1.6900 0.99 2724 160 0.1203 0.1439 REMARK 3 6 1.6900 - 1.5900 0.98 2749 138 0.1168 0.1385 REMARK 3 7 1.5900 - 1.5100 0.98 2726 146 0.1167 0.1431 REMARK 3 8 1.5100 - 1.4500 0.98 2729 150 0.1222 0.1524 REMARK 3 9 1.4500 - 1.3900 0.97 2687 132 0.1411 0.1617 REMARK 3 10 1.3900 - 1.3400 0.96 2685 139 0.1421 0.1711 REMARK 3 11 1.3400 - 1.3000 0.96 2695 141 0.1570 0.1829 REMARK 3 12 1.3000 - 1.2700 0.97 2644 163 0.1678 0.2018 REMARK 3 13 1.2700 - 1.2300 0.96 2625 136 0.1832 0.2130 REMARK 3 14 1.2300 - 1.2000 0.96 2668 148 0.1948 0.2200 REMARK 3 15 1.2000 - 1.1700 0.95 2635 138 0.2273 0.2273 REMARK 3 16 1.1700 - 1.1500 0.96 2669 123 0.2605 0.3001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.102 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1181 REMARK 3 ANGLE : 1.076 1588 REMARK 3 CHIRALITY : 0.070 180 REMARK 3 PLANARITY : 0.007 200 REMARK 3 DIHEDRAL : 15.273 676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 16.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE PH 4.5, 50% W/V PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.44000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.72000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.08000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 5.36000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 GLN A 72 REMARK 465 GLU A 73 REMARK 465 MET A 74 REMARK 465 SER A 75 REMARK 465 ASN A 145 REMARK 465 GLU A 146 REMARK 465 THR A 147 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 12 O HOH A 701 1.30 REMARK 500 HZ1 LYS A 12 O HOH A 708 1.52 REMARK 500 HZ2 LYS A 85 O HOH A 706 1.58 REMARK 500 NZ LYS A 12 O HOH A 701 1.66 REMARK 500 O HOH A 702 O HOH A 790 1.98 REMARK 500 OE2 GLU A 43 O HOH A 702 1.98 REMARK 500 O HOH A 781 O HOH A 788 2.05 REMARK 500 O HOH A 763 O HOH A 793 2.09 REMARK 500 OE1 GLU A 115 O GLU A 117 2.11 REMARK 500 O HOH A 710 O HOH A 711 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B3S RELATED DB: PDB DBREF1 8OTK A 1 150 UNP A0A164W157_BACIU DBREF2 8OTK A A0A164W157 1 150 SEQADV 8OTK ILE A -4 UNP A0A164W15 EXPRESSION TAG SEQADV 8OTK ASP A -3 UNP A0A164W15 EXPRESSION TAG SEQADV 8OTK PRO A -2 UNP A0A164W15 EXPRESSION TAG SEQADV 8OTK PHE A -1 UNP A0A164W15 EXPRESSION TAG SEQADV 8OTK THR A 0 UNP A0A164W15 EXPRESSION TAG SEQADV 8OTK PRO A 11 UNP A0A164W15 GLN 11 CONFLICT SEQRES 1 A 155 ILE ASP PRO PHE THR MET MET PHE GLY ARG PHE THR GLU SEQRES 2 A 155 ARG ALA PRO LYS VAL LEU ALA LEU ALA GLN GLU GLU ALA SEQRES 3 A 155 LEU ARG LEU GLY HIS ASN ASN ILE GLY THR GLU HIS ILE SEQRES 4 A 155 LEU LEU GLY LEU VAL ARG GLU GLY GLU GLY ILE ALA ALA SEQRES 5 A 155 LYS ALA LEU GLN ALA LEU GLY LEU GLY SER GLU LYS ILE SEQRES 6 A 155 GLN LYS GLU VAL GLU SER LEU ILE GLY ARG GLY GLN GLU SEQRES 7 A 155 MET SER GLN THR ILE HIS TYR THR PRO ARG ALA LYS LYS SEQRES 8 A 155 VAL ILE GLU LEU SER MET ASP GLU ALA ARG LYS LEU GLY SEQRES 9 A 155 HIS SER TYR VAL GLY THR GLU HIS ILE LEU LEU GLY LEU SEQRES 10 A 155 ILE ARG GLU GLY GLU GLY VAL ALA ALA ARG VAL LEU ASN SEQRES 11 A 155 ASN LEU GLY VAL SER LEU ASN LYS ALA ARG GLN GLN VAL SEQRES 12 A 155 LEU GLN LEU LEU GLY SER ASN GLU THR GLY SER SER HET 1PE A 601 38 HET 1PE A 602 38 HET CO3 A 603 4 HET GOL A 604 12 HET CO3 A 605 4 HET 1PE A 606 38 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CO3 CARBONATE ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 1PE 3(C10 H22 O6) FORMUL 4 CO3 2(C O3 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 8 SO4 5(O4 S 2-) FORMUL 13 HOH *99(H2 O) HELIX 1 AA1 ARG A 9 LEU A 24 1 16 HELIX 2 AA2 GLY A 30 GLY A 42 1 13 HELIX 3 AA3 GLY A 44 LEU A 53 1 10 HELIX 4 AA4 GLY A 56 GLY A 69 1 14 HELIX 5 AA5 THR A 81 LEU A 98 1 18 HELIX 6 AA6 GLY A 104 GLY A 116 1 13 HELIX 7 AA7 GLY A 118 LEU A 127 1 10 HELIX 8 AA8 SER A 130 GLY A 143 1 14 SHEET 1 AA1 2 ASN A 28 ILE A 29 0 SHEET 2 AA1 2 HIS A 79 TYR A 80 1 O HIS A 79 N ILE A 29 CRYST1 84.621 84.621 32.160 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011817 0.006823 0.000000 0.00000 SCALE2 0.000000 0.013646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031095 0.00000