HEADER TRANSCRIPTION 21-APR-23 8OTT TITLE MYC-MAX BOUND TO A NUCLEOSOME AT SHL+5.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HISTONE H2B TYPE 1-J; COMPND 19 CHAIN: D, H; COMPND 20 SYNONYM: HISTONE H2B.1,HISTONE H2B.R,H2B/R; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: HISTONE H2A TYPE 1-K; COMPND 24 CHAIN: G; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: DNA (144-MER); COMPND 28 CHAIN: I; COMPND 29 ENGINEERED: YES; COMPND 30 MOL_ID: 7; COMPND 31 MOLECULE: DNA (144-MER); COMPND 32 CHAIN: J; COMPND 33 ENGINEERED: YES; COMPND 34 MOL_ID: 8; COMPND 35 MOLECULE: MYC PROTO-ONCOGENE PROTEIN; COMPND 36 CHAIN: M; COMPND 37 SYNONYM: CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 39,BHLHE39,PROTO- COMPND 38 ONCOGENE C-MYC,TRANSCRIPTION FACTOR P64; COMPND 39 ENGINEERED: YES; COMPND 40 MOL_ID: 9; COMPND 41 MOLECULE: PROTEIN MAX; COMPND 42 CHAIN: N; COMPND 43 SYNONYM: CLASS D BASIC HELIX-LOOP-HELIX PROTEIN 4,BHLHD4,MYC- COMPND 44 ASSOCIATED FACTOR X; COMPND 45 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 6 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 7 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 8 HIST1H3I, H3C12, H3FJ, HIST1H3J; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, SOURCE 16 H4/G, H4FG, HIST1H4C, H4C4, H4/B, H4FB, HIST1H4D, H4C5, H4/J, H4FJ, SOURCE 17 HIST1H4E, H4C6, H4/C, H4FC, HIST1H4F, H4C8, H4/H, H4FH, HIST1H4H, SOURCE 18 H4C9, H4/M, H4FM, HIST1H4I, H4C11, H4/E, H4FE, HIST1H4J, H4C12, SOURCE 19 H4/D, H4FD, HIST1H4K, H4C13, H4/K, H4FK, HIST1H4L, H4C14, H4/N, SOURCE 20 H4F2, H4FN, HIST2H4, HIST2H4A, H4C15, H4/O, H4FO, HIST2H4B, H4C16, SOURCE 21 H4-16, HIST4H4; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 24 MOL_ID: 3; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 GENE: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: H2BC11, H2BFR, HIST1H2BJ; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 38 MOL_ID: 5; SOURCE 39 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 40 ORGANISM_COMMON: HUMAN; SOURCE 41 ORGANISM_TAXID: 9606; SOURCE 42 GENE: H2AC15, HIST1H2AK; SOURCE 43 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 44 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 45 MOL_ID: 6; SOURCE 46 SYNTHETIC: YES; SOURCE 47 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 48 ORGANISM_TAXID: 32630; SOURCE 49 MOL_ID: 7; SOURCE 50 SYNTHETIC: YES; SOURCE 51 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 52 ORGANISM_TAXID: 32630; SOURCE 53 MOL_ID: 8; SOURCE 54 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 55 ORGANISM_COMMON: HUMAN; SOURCE 56 ORGANISM_TAXID: 9606; SOURCE 57 GENE: MYC, BHLHE39; SOURCE 58 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 59 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 60 MOL_ID: 9; SOURCE 61 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 62 ORGANISM_COMMON: HUMAN; SOURCE 63 ORGANISM_TAXID: 9606; SOURCE 64 GENE: MAX, BHLHD4; SOURCE 65 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 66 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E-BOX, TRANSCRIPTION EXPDTA ELECTRON MICROSCOPY AUTHOR L.STOOS,A.K.MICHAEL,G.KEMPF,L.KATER,S.CAVADINI,N.THOMA REVDAT 5 06-SEP-23 8OTT 1 LINK ATOM REVDAT 4 26-JUL-23 8OTT 1 JRNL REVDAT 3 19-JUL-23 8OTT 1 JRNL REVDAT 2 12-JUL-23 8OTT 1 JRNL REVDAT 1 24-MAY-23 8OTT 0 JRNL AUTH A.K.MICHAEL,L.STOOS,P.CROSBY,N.EGGERS,X.Y.NIE,K.MAKASHEVA, JRNL AUTH 2 M.MINNICH,K.L.HEALY,J.WEISS,G.KEMPF,S.CAVADINI,L.KATER, JRNL AUTH 3 J.SEEBACHER,L.VECCHIA,D.CHAKRABORTY,L.ISBEL,R.S.GRAND, JRNL AUTH 4 F.ANDERSCH,J.L.FRIBOURGH,D.SCHUBELER,J.ZUBER,A.C.LIU, JRNL AUTH 5 P.B.BECKER,B.FIERZ,C.L.PARTCH,J.S.MENET,N.H.THOMA JRNL TITL COOPERATION BETWEEN BHLH TRANSCRIPTION FACTORS AND HISTONES JRNL TITL 2 FOR DNA ACCESS. JRNL REF NATURE V. 619 385 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37407816 JRNL DOI 10.1038/S41586-023-06282-3 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 152914 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8OTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292122386. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MYC-MAX BOUND TO A NUCLEOSOME REMARK 245 AT SHL+5.8; NUCLEOSOMAL CORE REMARK 245 PARTICLE; CMYC/MAX HETERODIMER; REMARK 245 HISTONE OCTAMER; NUCLEOSOMAL DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 39 REMARK 465 VAL F 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN M 353 CG OD1 ND2 REMARK 470 VAL M 354 CG1 CG2 REMARK 470 LYS M 355 CG CD CE NZ REMARK 470 ARG M 356 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 357 CG CD NE CZ NH1 NH2 REMARK 470 THR M 358 OG1 CG2 REMARK 470 HIS M 359 CG ND1 CD2 CE1 NE2 REMARK 470 ASN M 360 CG OD1 ND2 REMARK 470 VAL M 361 CG1 CG2 REMARK 470 LEU M 362 CG CD1 CD2 REMARK 470 GLU M 363 CG CD OE1 OE2 REMARK 470 ARG M 364 CG CD NE CZ NH1 NH2 REMARK 470 GLN M 365 CG CD OE1 NE2 REMARK 470 ARG M 366 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 367 CG CD NE CZ NH1 NH2 REMARK 470 ASN M 368 CG OD1 ND2 REMARK 470 GLU M 369 CG CD OE1 OE2 REMARK 470 LEU M 370 CG CD1 CD2 REMARK 470 LYS M 371 CG CD CE NZ REMARK 470 ARG M 372 CG CD NE CZ NH1 NH2 REMARK 470 SER M 373 OG REMARK 470 PHE M 374 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE M 375 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU M 377 CG CD1 CD2 REMARK 470 ARG M 378 CG CD NE CZ NH1 NH2 REMARK 470 ASP M 379 CG OD1 OD2 REMARK 470 GLN M 380 CG CD OE1 NE2 REMARK 470 ILE M 381 CG1 CG2 CD1 REMARK 470 GLU M 383 CG CD OE1 OE2 REMARK 470 LEU M 384 CG CD1 CD2 REMARK 470 GLU M 385 CG CD OE1 OE2 REMARK 470 ASN M 386 CG OD1 ND2 REMARK 470 ASN M 387 CG OD1 ND2 REMARK 470 GLU M 388 CG CD OE1 OE2 REMARK 470 LYS M 389 CG CD CE NZ REMARK 470 LYS M 392 CG CD CE NZ REMARK 470 VAL M 393 CG1 CG2 REMARK 470 VAL M 394 CG1 CG2 REMARK 470 ILE M 395 CG1 CG2 CD1 REMARK 470 LEU M 396 CG CD1 CD2 REMARK 470 LYS M 397 CG CD CE NZ REMARK 470 LYS M 398 CG CD CE NZ REMARK 470 THR M 400 OG1 CG2 REMARK 470 TYR M 402 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE M 403 CG1 CG2 CD1 REMARK 470 LEU M 404 CG CD1 CD2 REMARK 470 SER M 405 OG REMARK 470 ASP N 23 CG OD1 OD2 REMARK 470 LYS N 24 CG CD CE NZ REMARK 470 ARG N 25 CG CD NE CZ NH1 NH2 REMARK 470 HIS N 27 CG ND1 CD2 CE1 NE2 REMARK 470 HIS N 28 CG ND1 CD2 CE1 NE2 REMARK 470 ASN N 29 CG OD1 ND2 REMARK 470 LEU N 31 CG CD1 CD2 REMARK 470 GLU N 32 CG CD OE1 OE2 REMARK 470 ARG N 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS N 34 CG CD CE NZ REMARK 470 ARG N 35 CG CD NE CZ NH1 NH2 REMARK 470 ARG N 36 CG CD NE CZ NH1 NH2 REMARK 470 ASP N 37 CG OD1 OD2 REMARK 470 HIS N 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE N 39 CG1 CG2 CD1 REMARK 470 LYS N 40 CG CD CE NZ REMARK 470 ASP N 41 CG OD1 OD2 REMARK 470 SER N 42 OG REMARK 470 PHE N 43 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS N 44 CG ND1 CD2 CE1 NE2 REMARK 470 SER N 45 OG REMARK 470 LEU N 46 CG CD1 CD2 REMARK 470 ARG N 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP N 48 CG OD1 OD2 REMARK 470 SER N 49 OG REMARK 470 VAL N 50 CG1 CG2 REMARK 470 SER N 52 OG REMARK 470 LEU N 53 CG CD1 CD2 REMARK 470 GLN N 54 CG CD OE1 NE2 REMARK 470 GLU N 56 CG CD OE1 OE2 REMARK 470 LYS N 57 CG CD CE NZ REMARK 470 SER N 59 OG REMARK 470 ARG N 60 CG CD NE CZ NH1 NH2 REMARK 470 GLN N 62 CG CD OE1 NE2 REMARK 470 ILE N 63 CG1 CG2 CD1 REMARK 470 LEU N 64 CG CD1 CD2 REMARK 470 ASP N 65 CG OD1 OD2 REMARK 470 LYS N 66 CG CD CE NZ REMARK 470 THR N 68 OG1 CG2 REMARK 470 GLU N 69 CG CD OE1 OE2 REMARK 470 TYR N 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE N 71 CG1 CG2 CD1 REMARK 470 GLN N 72 CG CD OE1 NE2 REMARK 470 TYR N 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG J 122 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 76 3.06 -69.97 REMARK 500 LYS D 85 50.57 -95.57 REMARK 500 ASP E 81 42.32 70.85 REMARK 500 LYS F 77 16.26 59.67 REMARK 500 PHE F 100 42.05 -103.77 REMARK 500 LYS G 13 35.63 -151.35 REMARK 500 LYS M 389 34.66 -98.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 92 0.10 SIDE CHAIN REMARK 500 ARG H 86 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-17184 RELATED DB: EMDB REMARK 900 MYC-MAX BOUND TO A NUCLEOSOME AT SHL+5.8 DBREF 8OTT A 39 133 UNP P68431 H31_HUMAN 40 134 DBREF 8OTT B 21 102 UNP P62805 H4_HUMAN 22 103 DBREF 8OTT C 8 116 UNP P04908 H2A1B_HUMAN 9 117 DBREF 8OTT D 32 124 UNP P06899 H2B1J_HUMAN 33 125 DBREF 8OTT E 39 133 UNP P68431 H31_HUMAN 40 134 DBREF 8OTT F 21 102 UNP P62805 H4_HUMAN 22 103 DBREF 8OTT G 10 117 UNP Q8CGP7 H2A1K_MOUSE 11 118 DBREF 8OTT H 32 124 UNP P06899 H2B1J_HUMAN 33 125 DBREF 8OTT I 3 146 PDB 8OTT 8OTT 3 146 DBREF 8OTT J 2 145 PDB 8OTT 8OTT 2 145 DBREF 8OTT M 353 405 UNP P01106 MYC_HUMAN 368 420 DBREF 8OTT N 23 73 UNP P61244 MAX_HUMAN 23 73 SEQRES 1 A 95 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 2 A 95 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 3 A 95 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 4 A 95 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 5 A 95 ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU SEQRES 6 A 95 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 7 A 95 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 8 A 95 ILE ARG GLY GLU SEQRES 1 B 82 VAL LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA SEQRES 2 B 82 ILE ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SEQRES 3 B 82 SER GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS SEQRES 4 B 82 VAL PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR SEQRES 5 B 82 THR GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP SEQRES 6 B 82 VAL VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR SEQRES 7 B 82 GLY PHE GLY GLY SEQRES 1 C 109 GLY LYS ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG SEQRES 2 C 109 ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU SEQRES 3 C 109 LEU ARG LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY SEQRES 4 C 109 ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR SEQRES 5 C 109 ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP SEQRES 6 C 109 ASN LYS LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU SEQRES 7 C 109 ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY SEQRES 8 C 109 ARG VAL THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE SEQRES 9 C 109 GLN ALA VAL LEU LEU SEQRES 1 D 93 SER ARG LYS GLU SER TYR SER ILE TYR VAL TYR LYS VAL SEQRES 2 D 93 LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS SEQRES 3 D 93 ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE PHE SEQRES 4 D 93 GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR SEQRES 5 D 93 ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR SEQRES 6 D 93 ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS SEQRES 7 D 93 ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SEQRES 8 D 93 SER ALA SEQRES 1 E 95 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 2 E 95 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 3 E 95 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 4 E 95 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 5 E 95 ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU SEQRES 6 E 95 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 7 E 95 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 8 E 95 ILE ARG GLY GLU SEQRES 1 F 82 VAL LEU ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA SEQRES 2 F 82 ILE ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SEQRES 3 F 82 SER GLY LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS SEQRES 4 F 82 VAL PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR SEQRES 5 F 82 THR GLU HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP SEQRES 6 F 82 VAL VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR SEQRES 7 F 82 GLY PHE GLY GLY SEQRES 1 G 108 ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA GLY SEQRES 2 G 108 LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG SEQRES 3 G 108 LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA PRO SEQRES 4 G 108 VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA GLU SEQRES 5 G 108 ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS SEQRES 6 G 108 LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 7 G 108 ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL SEQRES 8 G 108 THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA SEQRES 9 G 108 VAL LEU LEU PRO SEQRES 1 H 93 SER ARG LYS GLU SER TYR SER ILE TYR VAL TYR LYS VAL SEQRES 2 H 93 LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS SEQRES 3 H 93 ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE PHE SEQRES 4 H 93 GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR SEQRES 5 H 93 ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR SEQRES 6 H 93 ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS SEQRES 7 H 93 ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SEQRES 8 H 93 SER ALA SEQRES 1 I 144 DG DG DA DG DA DA DT DC DC DC DG DG DT SEQRES 2 I 144 DC DT DG DC DA DG DG DC DC DG DC DT DC SEQRES 3 I 144 DA DA DT DT DG DG DT DC DG DT DA DG DA SEQRES 4 I 144 DC DA DG DC DT DC DT DA DG DC DA DC DC SEQRES 5 I 144 DG DC DT DT DA DA DA DC DG DC DA DC DG SEQRES 6 I 144 DT DA DC DG DC DG DC DT DG DT DC DC DC SEQRES 7 I 144 DC DC DG DC DG DT DT DT DT DA DA DC DC SEQRES 8 I 144 DG DC DC DA DA DG DG DG DG DA DT DT DA SEQRES 9 I 144 DC DT DC DC DC DT DA DG DT DC DT DC DC SEQRES 10 I 144 DA DG DG DC DA DC DG DG DG DT DC DA DC SEQRES 11 I 144 DG DT DG DC DA DT DA DC DA DT DC DC DT SEQRES 12 I 144 DG SEQRES 1 J 144 DC DA DG DG DA DT DG DT DA DT DG DC DA SEQRES 2 J 144 DC DG DT DG DA DC DC DC DG DT DG DC DC SEQRES 3 J 144 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 144 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 144 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 144 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 144 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 144 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 144 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 144 DT DG DA DG DC DG DG DC DC DT DG DC DA SEQRES 11 J 144 DG DA DC DC DG DG DG DA DT DT DC DT DC SEQRES 12 J 144 DC SEQRES 1 M 53 ASN VAL LYS ARG ARG THR HIS ASN VAL LEU GLU ARG GLN SEQRES 2 M 53 ARG ARG ASN GLU LEU LYS ARG SER PHE PHE ALA LEU ARG SEQRES 3 M 53 ASP GLN ILE PRO GLU LEU GLU ASN ASN GLU LYS ALA PRO SEQRES 4 M 53 LYS VAL VAL ILE LEU LYS LYS ALA THR ALA TYR ILE LEU SEQRES 5 M 53 SER SEQRES 1 N 51 ASP LYS ARG ALA HIS HIS ASN ALA LEU GLU ARG LYS ARG SEQRES 2 N 51 ARG ASP HIS ILE LYS ASP SER PHE HIS SER LEU ARG ASP SEQRES 3 N 51 SER VAL PRO SER LEU GLN GLY GLU LYS ALA SER ARG ALA SEQRES 4 N 51 GLN ILE LEU ASP LYS ALA THR GLU TYR ILE GLN TYR HET PTD A 201 5 HET PTD A 202 5 HET PTD A 203 5 HET PTD C 200 5 HET PTD D 201 5 HET PTD D 202 5 HET PTD E 201 5 HET PTD H 200 5 HETNAM PTD PENTANEDIAL FORMUL 13 PTD 8(C5 H8 O2) HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 LYS A 79 1 17 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLY B 94 1 13 HELIX 9 AA9 THR C 16 GLY C 22 1 7 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 ALA C 45 ASN C 73 1 29 HELIX 12 AB3 ILE C 79 ASN C 89 1 11 HELIX 13 AB4 ASP C 90 LEU C 97 1 8 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 37 HIS D 49 1 13 HELIX 16 AB7 SER D 55 ASN D 84 1 30 HELIX 17 AB8 THR D 90 LEU D 102 1 13 HELIX 18 AB9 PRO D 103 SER D 123 1 21 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 GLN E 76 1 14 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 GLY E 132 1 13 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLN F 93 1 12 HELIX 27 AC9 THR G 16 GLY G 22 1 7 HELIX 28 AD1 PRO G 26 LYS G 36 1 11 HELIX 29 AD2 GLY G 37 TYR G 39 5 3 HELIX 30 AD3 GLY G 46 ASN G 73 1 28 HELIX 31 AD4 ILE G 79 ASN G 89 1 11 HELIX 32 AD5 ASP G 90 LEU G 97 1 8 HELIX 33 AD6 GLN G 112 LEU G 116 5 5 HELIX 34 AD7 TYR H 37 HIS H 49 1 13 HELIX 35 AD8 SER H 55 ASN H 84 1 30 HELIX 36 AD9 THR H 90 LEU H 102 1 13 HELIX 37 AE1 PRO H 103 SER H 123 1 21 HELIX 38 AE2 VAL M 354 ILE M 381 1 28 HELIX 39 AE3 PRO M 382 GLU M 385 5 4 HELIX 40 AE4 PRO M 391 SER M 405 1 15 HELIX 41 AE5 LYS N 24 VAL N 50 1 27 HELIX 42 AE6 PRO N 51 GLN N 54 5 4 HELIX 43 AE7 SER N 59 TYR N 73 1 15 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 LEU B 97 TYR B 98 0 SHEET 2 AA3 2 THR G 101 ILE G 102 1 O THR G 101 N TYR B 98 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA6 2 THR C 101 ILE C 102 0 SHEET 2 AA6 2 LEU F 97 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 78 LINK NZ LYS A 79 C5 PTD A 201 1555 1555 1.26 LINK NZ LYS A 115 C1 PTD A 203 1555 1555 1.26 LINK NZ LYS A 122 C1 PTD A 202 1555 1555 1.26 LINK C1 PTD A 201 NZ LYS B 79 1555 1555 1.26 LINK C5 PTD A 202 NZ LYS E 115 1555 1555 1.26 LINK C5 PTD A 203 NZ LYS E 122 1555 1555 1.26 LINK NZ LYS C 36 C1 PTD C 200 1555 1555 1.26 LINK C5 PTD C 200 NZ LYS H 85 1555 1555 1.26 LINK NZ LYS D 43 C5 PTD D 201 1555 1555 1.26 LINK NZ LYS D 46 C1 PTD D 201 1555 1555 1.26 LINK NZ LYS D 85 C5 PTD D 202 1555 1555 1.26 LINK C1 PTD D 202 NZ LYS G 36 1555 1555 1.26 LINK NZ LYS E 79 C1 PTD E 201 1555 1555 1.26 LINK C5 PTD E 201 NZ LYS F 79 1555 1555 1.26 LINK NZ LYS H 43 C5 PTD H 200 1555 1555 1.26 LINK NZ LYS H 46 C1 PTD H 200 1555 1555 1.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000