HEADER SIGNALING PROTEIN 21-APR-23 8OU5 TITLE CEREBLON ISOFORM 4 IN COMPLEX WITH NOVEL BENZAMIDE-TYPE CEREBLON TITLE 2 BINDER 11B COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBLON ISOFORM 4; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 55518; SOURCE 4 GENE: MGR_0879; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CEREBLON, PROTAC, E3, MOLECULAR GLUE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HEIM,L.BISCHOF,M.D.HARTMANN REVDAT 2 22-NOV-23 8OU5 1 JRNL REVDAT 1 15-NOV-23 8OU5 0 JRNL AUTH C.STEINEBACH,A.BRICELJ,A.MURGAI,I.SOSIC,L.BISCHOF,Y.L.D.NG, JRNL AUTH 2 C.HEIM,S.MAIWALD,M.PROJ,R.VOGET,F.FELLER,J.KOSMRLJ, JRNL AUTH 3 V.SAPOZHNIKOVA,A.SCHMIDT,M.R.ZULEEG,P.LEMNITZER,P.MERTINS, JRNL AUTH 4 F.K.HANSEN,M.GUTSCHOW,J.KRONKE,M.D.HARTMANN JRNL TITL LEVERAGING LIGAND AFFINITY AND PROPERTIES: DISCOVERY OF JRNL TITL 2 NOVEL BENZAMIDE-TYPE CEREBLON BINDERS FOR THE DESIGN OF JRNL TITL 3 PROTACS. JRNL REF J.MED.CHEM. V. 66 14513 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37902300 JRNL DOI 10.1021/ACS.JMEDCHEM.3C00851 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 693 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09900 REMARK 3 B22 (A**2) : 0.53300 REMARK 3 B33 (A**2) : -0.43400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.037 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2357 ; 0.003 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 2048 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3205 ; 0.958 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4669 ; 0.373 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 7.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;10.631 ; 6.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;12.488 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 343 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 82 ; 0.219 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1091 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.140 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1182 ; 1.387 ; 3.732 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1182 ; 1.386 ; 3.733 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1468 ; 2.317 ; 6.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1469 ; 2.316 ; 6.704 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 1.877 ; 3.941 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1176 ; 1.876 ; 3.942 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1735 ; 3.206 ; 7.160 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1736 ; 3.205 ; 7.160 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 123 NULL REMARK 3 1 A 20 A 123 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 20 A 122 NULL REMARK 3 2 A 20 A 122 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 20 A 122 NULL REMARK 3 3 A 20 A 122 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0971 17.9283 1.8286 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.1741 REMARK 3 T33: 0.0764 T12: 0.0200 REMARK 3 T13: -0.0285 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.4437 L22: 3.2450 REMARK 3 L33: 5.4345 L12: -0.0423 REMARK 3 L13: 0.9468 L23: 1.7315 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0513 S13: -0.3303 REMARK 3 S21: -0.1818 S22: -0.0521 S23: 0.0449 REMARK 3 S31: 0.0638 S32: -0.0126 S33: 0.0386 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 31.9952 7.5005 24.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.1331 REMARK 3 T33: 0.0028 T12: 0.0019 REMARK 3 T13: 0.0096 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 4.5128 L22: 4.0831 REMARK 3 L33: 2.6279 L12: -1.0890 REMARK 3 L13: 0.7198 L23: -0.6999 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.0588 S13: -0.0449 REMARK 3 S21: -0.0104 S22: 0.1092 S23: 0.0420 REMARK 3 S31: -0.0274 S32: 0.0850 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 30.0653 -5.8770 -6.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.5574 REMARK 3 T33: 0.4216 T12: -0.0235 REMARK 3 T13: 0.1106 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 4.5416 L22: 3.9841 REMARK 3 L33: 2.5907 L12: 1.9678 REMARK 3 L13: 1.1202 L23: -0.1282 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: -0.1649 S13: -0.2234 REMARK 3 S21: -0.1007 S22: 0.0386 S23: 0.6847 REMARK 3 S31: 0.2152 S32: -0.6590 S33: -0.1325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8OU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292130026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M (NH4)H2PO4, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.24200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.78600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.24200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.78600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 124 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 124 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 ASN C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN C 12 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 LEU C 38 REMARK 465 PRO C 39 REMARK 465 MET C 40 REMARK 465 GLY C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 44 REMARK 465 GLU C 45 REMARK 465 ALA C 52 REMARK 465 GLY C 53 REMARK 465 MET C 54 REMARK 465 ILE C 55 REMARK 465 LYS C 81 REMARK 465 GLY C 82 REMARK 465 GLY C 103 REMARK 465 GLY C 104 REMARK 465 SER C 105 REMARK 465 GLN C 106 REMARK 465 PRO C 107 REMARK 465 ASP C 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ILE C 21 CD1 REMARK 470 ARG C 34 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 37 CG CD1 CD2 REMARK 470 HIS C 46 CG ND1 CD2 CE1 NE2 REMARK 470 VAL C 47 CG1 CG2 REMARK 470 VAL C 48 CG1 CG2 REMARK 470 PHE C 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 50 CG OD1 ND2 REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 TRP C 59 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 59 CZ3 CH2 REMARK 470 ARG C 68 CD NE CZ NH1 NH2 REMARK 470 SER C 74 OG REMARK 470 GLU C 76 CG CD OE1 OE2 REMARK 470 TRP C 79 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 79 CZ3 CH2 REMARK 470 PHE C 80 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR C 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 84 CG OD1 OD2 REMARK 470 ILE C 87 CG1 CG2 CD1 REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 GLN C 108 CG CD OE1 NE2 REMARK 470 THR C 109 OG1 CG2 REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 ASP C 116 CG OD1 OD2 REMARK 470 GLU C 120 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -53.94 -121.90 REMARK 500 ILE B 31 -51.58 -120.41 REMARK 500 ALA C 19 41.09 -161.13 REMARK 500 ILE C 31 -52.78 -120.28 REMARK 500 ARG C 34 -85.32 -52.48 REMARK 500 ASP C 35 -56.00 84.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG C 34 ASP C 35 63.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 113.8 REMARK 620 3 CYS A 90 SG 108.5 99.1 REMARK 620 4 CYS A 93 SG 110.0 114.4 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 CYS B 27 SG 113.9 REMARK 620 3 CYS B 90 SG 106.3 107.4 REMARK 620 4 CYS B 93 SG 99.0 119.4 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 24 SG REMARK 620 2 CYS C 27 SG 111.8 REMARK 620 3 CYS C 90 SG 105.9 100.9 REMARK 620 4 CYS C 93 SG 107.6 117.0 113.0 REMARK 620 N 1 2 3 DBREF 8OU5 A 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8OU5 B 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8OU5 C 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 SEQADV 8OU5 ALA A 0 UNP A4TVL0 EXPRESSION TAG SEQADV 8OU5 ALA B 0 UNP A4TVL0 EXPRESSION TAG SEQADV 8OU5 ALA C 0 UNP A4TVL0 EXPRESSION TAG SEQRES 1 A 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 A 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 A 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 A 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 A 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 A 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 A 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 A 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 A 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 A 125 ARG LEU ALA GLU GLY PRO ALA ASP SEQRES 1 B 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 B 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 B 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 B 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 B 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 B 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 B 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 B 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 B 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 B 125 ARG LEU ALA GLU GLY PRO ALA ASP SEQRES 1 C 125 ALA MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN SEQRES 2 C 125 MET VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG SEQRES 3 C 125 GLN CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU SEQRES 4 C 125 PRO MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO SEQRES 5 C 125 ALA GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA SEQRES 6 C 125 GLN GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SEQRES 7 C 125 SER TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS SEQRES 8 C 125 GLY GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY SEQRES 9 C 125 GLY SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP SEQRES 10 C 125 ARG LEU ALA GLU GLY PRO ALA ASP HET ZN A 201 1 HET W1X A 202 34 HET ZN B 201 1 HET W1X B 202 34 HET ZN C 201 1 HETNAM ZN ZINC ION HETNAM W1X 4-AZANYL-~{N}-[(3~{S})-2,6-BIS(OXIDANYLIDENE)PIPERIDIN- HETNAM 2 W1X 3-YL]-2-(TRIFLUOROMETHYL)BENZAMIDE FORMUL 4 ZN 3(ZN 2+) FORMUL 5 W1X 2(C13 H12 F3 N3 O3) FORMUL 9 HOH *24(H2 O) HELIX 1 AA1 ASP A 35 LEU A 37 5 3 HELIX 2 AA2 ASP B 35 LEU B 37 5 3 HELIX 3 AA3 PRO B 39 ASP B 43 5 5 HELIX 4 AA4 ASP C 35 LEU C 37 5 3 SHEET 1 AA1 3 THR A 30 ARG A 33 0 SHEET 2 AA1 3 ILE A 21 CYS A 24 -1 N PHE A 22 O SER A 32 SHEET 3 AA1 3 LEU A 118 GLY A 121 -1 O GLY A 121 N ILE A 21 SHEET 1 AA2 6 GLU A 45 PHE A 49 0 SHEET 2 AA2 6 ILE A 55 PHE A 61 -1 O VAL A 58 N HIS A 46 SHEET 3 AA2 6 PHE A 110 ILE A 114 -1 O PHE A 111 N PHE A 61 SHEET 4 AA2 6 HIS A 96 GLU A 102 -1 N TYR A 101 O PHE A 110 SHEET 5 AA2 6 ASP A 84 CYS A 90 -1 N ASP A 84 O GLU A 102 SHEET 6 AA2 6 LEU A 67 SER A 74 -1 N SER A 74 O TRP A 85 SHEET 1 AA3 3 THR B 30 ARG B 33 0 SHEET 2 AA3 3 ILE B 21 CYS B 24 -1 N PHE B 22 O SER B 32 SHEET 3 AA3 3 LEU B 118 GLY B 121 -1 O GLY B 121 N ILE B 21 SHEET 1 AA4 6 GLU B 45 PHE B 49 0 SHEET 2 AA4 6 ILE B 55 PHE B 61 -1 O VAL B 58 N HIS B 46 SHEET 3 AA4 6 PHE B 110 ILE B 114 -1 O PHE B 111 N PHE B 61 SHEET 4 AA4 6 HIS B 96 GLU B 102 -1 N TYR B 101 O PHE B 110 SHEET 5 AA4 6 ASP B 84 CYS B 90 -1 N ASP B 84 O GLU B 102 SHEET 6 AA4 6 LEU B 67 SER B 74 -1 N SER B 74 O TRP B 85 SHEET 1 AA5 3 THR C 30 ARG C 33 0 SHEET 2 AA5 3 ILE C 21 CYS C 24 -1 N PHE C 22 O SER C 32 SHEET 3 AA5 3 LEU C 118 GLY C 121 -1 O GLY C 121 N ILE C 21 SHEET 1 AA6 5 VAL C 58 PHE C 61 0 SHEET 2 AA6 5 PHE C 110 ILE C 114 -1 O PHE C 111 N PHE C 61 SHEET 3 AA6 5 HIS C 96 GLU C 102 -1 N TYR C 101 O PHE C 110 SHEET 4 AA6 5 ASP C 84 CYS C 90 -1 N ASP C 84 O GLU C 102 SHEET 5 AA6 5 LEU C 67 SER C 74 -1 N SER C 74 O TRP C 85 LINK SG CYS A 24 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 27 ZN ZN A 201 1555 1555 2.40 LINK SG CYS A 90 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 93 ZN ZN A 201 1555 1555 2.25 LINK SG CYS B 24 ZN ZN B 201 1555 1555 2.47 LINK SG CYS B 27 ZN ZN B 201 1555 1555 2.26 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.27 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.29 LINK SG CYS C 24 ZN ZN C 201 1555 1555 2.44 LINK SG CYS C 27 ZN ZN C 201 1555 1555 2.35 LINK SG CYS C 90 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 93 ZN ZN C 201 1555 1555 2.21 CISPEP 1 GLN A 106 PRO A 107 0 -2.68 CISPEP 2 GLN B 106 PRO B 107 0 -1.86 CRYST1 56.839 59.572 88.484 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011301 0.00000