HEADER PHOTOSYNTHESIS 25-APR-23 8OV5 TITLE PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE, 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIDININ-CHLOROPHYLL A-BINDING PROTEIN 1, CHLOROPLASTIC; COMPND 3 CHAIN: M, N, O; COMPND 4 SYNONYM: PCP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHIDINIUM CARTERAE; SOURCE 3 ORGANISM_TAXID: 2961; SOURCE 4 EXPRESSION_SYSTEM: AMPHIDINIUM CARTERAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 2961 KEYWDS LIGHT HARVESTING, CAROTENOID, CHLOROPHYLL, LIPID, DINOFLAGELLATES, KEYWDS 2 PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR E.HOFMANN,S.JOHANNING REVDAT 3 16-OCT-24 8OV5 1 JRNL REVDAT 2 09-OCT-24 8OV5 1 JRNL REVDAT 1 15-MAY-24 8OV5 0 JRNL AUTH T.SCHULTE,N.C.M.MAGDAONG,M.DI VALENTIN,A.AGOSTINI,C.E.TAIT, JRNL AUTH 2 D.M.NIEDZWIEDZKI,D.CARBONERA,E.HOFMANN JRNL TITL STRUCTURAL AND SPECTROSCOPIC CHARACTERIZATION OF THE JRNL TITL 2 PERIDININ-CHLOROPHYLL A-PROTEIN (PCP) COMPLEX FROM JRNL TITL 3 HETEROCAPSA PYGMAEA (HPPCP). JRNL REF BIOCHIM BIOPHYS ACTA V.1866 49510 2024 JRNL REF 2 BIOENERG JRNL REFN ISSN 1879-2650 JRNL PMID 39321862 JRNL DOI 10.1016/J.BBABIO.2024.149510 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 444064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 22204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3800 - 3.5700 0.99 16593 873 0.1399 0.1531 REMARK 3 2 3.5700 - 2.8400 1.00 16478 869 0.1386 0.1510 REMARK 3 3 2.8400 - 2.4800 1.00 16483 867 0.1263 0.1372 REMARK 3 4 2.4800 - 2.2500 1.00 16450 867 0.1164 0.1299 REMARK 3 5 2.2500 - 2.0900 1.00 16441 865 0.1229 0.1346 REMARK 3 6 2.0900 - 1.9700 1.00 16431 865 0.1295 0.1376 REMARK 3 7 1.9700 - 1.8700 1.00 16374 862 0.1299 0.1437 REMARK 3 8 1.8700 - 1.7900 1.00 16465 866 0.1271 0.1397 REMARK 3 9 1.7900 - 1.7200 1.00 16459 867 0.1258 0.1452 REMARK 3 10 1.7200 - 1.6600 1.00 16363 861 0.1231 0.1364 REMARK 3 11 1.6600 - 1.6100 1.00 16400 863 0.1217 0.1435 REMARK 3 12 1.6100 - 1.5600 1.00 16433 865 0.1270 0.1486 REMARK 3 13 1.5600 - 1.5200 1.00 16434 865 0.1289 0.1440 REMARK 3 14 1.5200 - 1.4800 1.00 16369 862 0.1335 0.1550 REMARK 3 15 1.4800 - 1.4500 1.00 16368 861 0.1447 0.1578 REMARK 3 16 1.4500 - 1.4200 1.00 16423 864 0.1554 0.1744 REMARK 3 17 1.4200 - 1.3900 1.00 16375 862 0.1649 0.1921 REMARK 3 18 1.3900 - 1.3600 1.00 16410 861 0.1731 0.1881 REMARK 3 19 1.3600 - 1.3400 1.00 16323 860 0.1783 0.1916 REMARK 3 20 1.3400 - 1.3200 1.00 16390 863 0.1923 0.2051 REMARK 3 21 1.3200 - 1.3000 0.91 14959 788 0.2052 0.2162 REMARK 3 22 1.3000 - 1.2800 0.81 13242 697 0.2157 0.2412 REMARK 3 23 1.2800 - 1.2600 0.72 11809 623 0.2261 0.2481 REMARK 3 24 1.2600 - 1.2400 0.65 10678 561 0.2273 0.2549 REMARK 3 25 1.2400 - 1.2200 0.58 9594 504 0.2432 0.2641 REMARK 3 26 1.2200 - 1.2100 0.52 8488 447 0.2609 0.2759 REMARK 3 27 1.2100 - 1.1900 0.46 7540 396 0.2776 0.2815 REMARK 3 28 1.1900 - 1.1800 0.41 6632 349 0.2827 0.2985 REMARK 3 29 1.1800 - 1.1600 0.34 5658 298 0.2926 0.2770 REMARK 3 30 1.1600 - 1.1500 0.29 4798 253 0.3181 0.3362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.094 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.072 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 9639 REMARK 3 ANGLE : 1.181 13398 REMARK 3 CHIRALITY : 0.072 1371 REMARK 3 PLANARITY : 0.015 1740 REMARK 3 DIHEDRAL : 21.038 3570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION FEB 5, 2021 REMARK 200 BUILT=20210323 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION FEB 5, 2021 REMARK 200 BUILT=20210323 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 444109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 49.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 32.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG8000, 100MM TRIS-HCL PH 7.5, REMARK 280 200MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.57000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.57000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -264.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH N 845 LIES ON A SPECIAL POSITION. REMARK 375 HOH N 968 LIES ON A SPECIAL POSITION. REMARK 375 HOH N1084 LIES ON A SPECIAL POSITION. REMARK 375 HOH N1087 LIES ON A SPECIAL POSITION. REMARK 375 HOH N1261 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH M 1204 O HOH O 1278 1.58 REMARK 500 HE21 GLN O 36 O HOH O 707 1.59 REMARK 500 O HOH M 1204 O HOH N 1005 1.81 REMARK 500 O HOH M 1018 O HOH M 1204 1.84 REMARK 500 O HOH O 756 O HOH O 1049 1.87 REMARK 500 O HOH O 1105 O HOH O 1278 1.92 REMARK 500 O HOH M 810 O HOH M 1039 1.94 REMARK 500 O HOH O 1099 O HOH O 1131 1.94 REMARK 500 O HOH O 791 O HOH O 862 1.95 REMARK 500 O HOH M 1204 O HOH O 935 1.96 REMARK 500 O HOH N 776 O HOH N 930 2.00 REMARK 500 O HOH M 1046 O HOH M 1047 2.00 REMARK 500 O HOH O 747 O HOH O 783 2.01 REMARK 500 O HOH M 839 O HOH M 1184 2.02 REMARK 500 O HOH O 1007 O HOH O 1039 2.02 REMARK 500 O HOH M 1060 O HOH M 1131 2.02 REMARK 500 O HOH O 951 O HOH O 1047 2.02 REMARK 500 O HOH O 1086 O HOH O 1159 2.02 REMARK 500 O HOH O 713 O HOH O 1079 2.04 REMARK 500 O HOH M 851 O HOH M 1187 2.04 REMARK 500 O HOH O 1192 O HOH O 1203 2.06 REMARK 500 O HOH M 724 O HOH M 1135 2.06 REMARK 500 OE2 GLU N 183 O HOH N 747 2.07 REMARK 500 OE2 GLU O 64 O HOH O 763 2.08 REMARK 500 O HOH N 744 O HOH N 1040 2.09 REMARK 500 O HOH N 956 O HOH N 1027 2.10 REMARK 500 O HOH M 788 O HOH M 805 2.10 REMARK 500 O HOH N 1048 O HOH O 1278 2.10 REMARK 500 OE1 GLU O 227 O HOH O 776 2.11 REMARK 500 O HOH M 763 O HOH N 804 2.11 REMARK 500 O HOH N 782 O HOH N 1149 2.11 REMARK 500 O HOH M 1253 O HOH M 1268 2.11 REMARK 500 O HOH N 1246 O HOH O 1230 2.11 REMARK 500 O HOH N 713 O HOH N 947 2.12 REMARK 500 OE2 GLU O 183 O HOH O 703 2.12 REMARK 500 O HOH O 783 O HOH O 1031 2.13 REMARK 500 O HOH M 1206 O HOH O 866 2.13 REMARK 500 O HOH O 796 O HOH O 1099 2.14 REMARK 500 O HOH M 961 O HOH M 1136 2.14 REMARK 500 O HOH O 848 O HOH O 1167 2.14 REMARK 500 O HOH M 1144 O HOH M 1174 2.15 REMARK 500 O HOH N 722 O HOH N 1066 2.15 REMARK 500 O HOH O 1172 O HOH O 1192 2.15 REMARK 500 O HOH M 1136 O HOH M 1173 2.15 REMARK 500 O HOH N 1202 O HOH O 1204 2.15 REMARK 500 O HOH M 1031 O HOH M 1206 2.15 REMARK 500 O HOH M 744 O HOH M 767 2.16 REMARK 500 O HOH N 945 O HOH N 1235 2.16 REMARK 500 O HOH O 1036 O HOH O 1260 2.17 REMARK 500 OE2 GLU M 183 O HOH M 820 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS O 231 O HOH M 1184 4555 2.00 REMARK 500 O HOH M 1184 O HOH O 951 4545 2.03 REMARK 500 OD1 ASP O 246 O HOH M 1184 4555 2.05 REMARK 500 O HOH M 744 O HOH O 1061 4545 2.12 REMARK 500 O HOH M 1184 O HOH O 970 4545 2.13 REMARK 500 O HOH M 1325 O HOH O 1092 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH M1313 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH M1314 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH M1316 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH M1317 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH M1318 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH M1319 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH M1320 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH M1321 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH M1322 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH M1323 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH M1324 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH M1325 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH M1326 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH N1256 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH N1257 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH N1259 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH N1260 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH N1261 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH N1262 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH N1263 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH N1264 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH N1265 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH N1266 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH O1301 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH O1302 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH O1303 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH O1304 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH O1305 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH O1306 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH O1307 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH O1308 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH O1309 DISTANCE = 7.28 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 W4I M 615 REMARK 610 W4I N 615 REMARK 610 W4I O 615 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA M 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 701 O REMARK 620 2 CLA M 601 NA 102.2 REMARK 620 3 CLA M 601 NB 99.3 89.3 REMARK 620 4 CLA M 601 NC 99.0 158.8 89.1 REMARK 620 5 CLA M 601 ND 103.9 88.2 156.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA M 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 702 O REMARK 620 2 CLA M 602 NA 105.6 REMARK 620 3 CLA M 602 NB 99.9 89.3 REMARK 620 4 CLA M 602 NC 97.2 157.1 88.3 REMARK 620 5 CLA M 602 ND 103.0 87.5 156.9 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA N 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 701 O REMARK 620 2 CLA N 601 NA 101.3 REMARK 620 3 CLA N 601 NB 98.6 89.5 REMARK 620 4 CLA N 601 NC 99.5 159.2 89.4 REMARK 620 5 CLA N 601 ND 102.4 88.6 158.9 85.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA N 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 702 O REMARK 620 2 CLA N 602 NA 106.4 REMARK 620 3 CLA N 602 NB 100.3 89.3 REMARK 620 4 CLA N 602 NC 96.4 157.0 89.3 REMARK 620 5 CLA N 602 ND 102.4 87.8 157.0 84.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA O 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH O 701 O REMARK 620 2 CLA O 601 NA 101.5 REMARK 620 3 CLA O 601 NB 100.1 89.5 REMARK 620 4 CLA O 601 NC 99.3 159.1 88.9 REMARK 620 5 CLA O 601 ND 103.1 88.3 156.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA O 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH O 702 O REMARK 620 2 CLA O 602 NA 105.5 REMARK 620 3 CLA O 602 NB 99.1 89.5 REMARK 620 4 CLA O 602 NC 96.7 157.7 89.0 REMARK 620 5 CLA O 602 ND 102.9 87.2 157.8 85.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PPR RELATED DB: PDB REMARK 900 1PPR IS AN OLD ROOM TEMPERATUR STRUCTURE OF THE SAME PROTEIN IN THE REMARK 900 SAME CRYSTAL FORM DBREF 8OV5 M 1 312 UNP P80484 PCP1_AMPCA 58 369 DBREF 8OV5 N 1 312 UNP P80484 PCP1_AMPCA 58 369 DBREF 8OV5 O 1 312 UNP P80484 PCP1_AMPCA 58 369 SEQADV 8OV5 ASN M 128 UNP P80484 SER 185 CONFLICT SEQADV 8OV5 VAL M 276 UNP P80484 ALA 333 CONFLICT SEQADV 8OV5 ASN N 128 UNP P80484 SER 185 CONFLICT SEQADV 8OV5 VAL N 276 UNP P80484 ALA 333 CONFLICT SEQADV 8OV5 ASN O 128 UNP P80484 SER 185 CONFLICT SEQADV 8OV5 VAL O 276 UNP P80484 ALA 333 CONFLICT SEQRES 1 M 312 ASP GLU ILE GLY ASP ALA ALA LYS LYS LEU GLY ASP ALA SEQRES 2 M 312 SER TYR ALA PHE ALA LYS GLU VAL ASP TRP ASN ASN GLY SEQRES 3 M 312 ILE PHE LEU GLN ALA PRO GLY LYS LEU GLN PRO LEU GLU SEQRES 4 M 312 ALA LEU LYS ALA ILE ASP LYS MET ILE VAL MET GLY ALA SEQRES 5 M 312 ALA ALA ASP PRO LYS LEU LEU LYS ALA ALA ALA GLU ALA SEQRES 6 M 312 HIS HIS LYS ALA ILE GLY SER VAL SER GLY PRO ASN GLY SEQRES 7 M 312 VAL THR SER ARG ALA ASP TRP ASP ASN VAL ASN ALA ALA SEQRES 8 M 312 LEU GLY ARG VAL ILE ALA SER VAL PRO GLU ASN MET VAL SEQRES 9 M 312 MET ASP VAL TYR ASP SER VAL SER LYS ILE THR ASP PRO SEQRES 10 M 312 LYS VAL PRO ALA TYR MET LYS SER LEU VAL ASN GLY ALA SEQRES 11 M 312 ASP ALA GLU LYS ALA TYR GLU GLY PHE LEU ALA PHE LYS SEQRES 12 M 312 ASP VAL VAL LYS LYS SER GLN VAL THR SER ALA ALA GLY SEQRES 13 M 312 PRO ALA THR VAL PRO SER GLY ASP LYS ILE GLY VAL ALA SEQRES 14 M 312 ALA GLN GLN LEU SER GLU ALA SER TYR PRO PHE LEU LYS SEQRES 15 M 312 GLU ILE ASP TRP LEU SER ASP VAL TYR MET LYS PRO LEU SEQRES 16 M 312 PRO GLY VAL SER ALA GLN GLN SER LEU LYS ALA ILE ASP SEQRES 17 M 312 LYS MET ILE VAL MET GLY ALA GLN ALA ASP GLY ASN ALA SEQRES 18 M 312 LEU LYS ALA ALA ALA GLU ALA HIS HIS LYS ALA ILE GLY SEQRES 19 M 312 SER ILE ASP ALA THR GLY VAL THR SER ALA ALA ASP TYR SEQRES 20 M 312 ALA ALA VAL ASN ALA ALA LEU GLY ARG VAL ILE ALA SER SEQRES 21 M 312 VAL PRO LYS SER THR VAL MET ASP VAL TYR ASN ALA MET SEQRES 22 M 312 ALA GLY VAL THR ASP THR SER ILE PRO LEU ASN MET PHE SEQRES 23 M 312 SER LYS VAL ASN PRO LEU ASP ALA ASN ALA ALA ALA LYS SEQRES 24 M 312 ALA PHE TYR THR PHE LYS ASP VAL VAL GLN ALA ALA GLN SEQRES 1 N 312 ASP GLU ILE GLY ASP ALA ALA LYS LYS LEU GLY ASP ALA SEQRES 2 N 312 SER TYR ALA PHE ALA LYS GLU VAL ASP TRP ASN ASN GLY SEQRES 3 N 312 ILE PHE LEU GLN ALA PRO GLY LYS LEU GLN PRO LEU GLU SEQRES 4 N 312 ALA LEU LYS ALA ILE ASP LYS MET ILE VAL MET GLY ALA SEQRES 5 N 312 ALA ALA ASP PRO LYS LEU LEU LYS ALA ALA ALA GLU ALA SEQRES 6 N 312 HIS HIS LYS ALA ILE GLY SER VAL SER GLY PRO ASN GLY SEQRES 7 N 312 VAL THR SER ARG ALA ASP TRP ASP ASN VAL ASN ALA ALA SEQRES 8 N 312 LEU GLY ARG VAL ILE ALA SER VAL PRO GLU ASN MET VAL SEQRES 9 N 312 MET ASP VAL TYR ASP SER VAL SER LYS ILE THR ASP PRO SEQRES 10 N 312 LYS VAL PRO ALA TYR MET LYS SER LEU VAL ASN GLY ALA SEQRES 11 N 312 ASP ALA GLU LYS ALA TYR GLU GLY PHE LEU ALA PHE LYS SEQRES 12 N 312 ASP VAL VAL LYS LYS SER GLN VAL THR SER ALA ALA GLY SEQRES 13 N 312 PRO ALA THR VAL PRO SER GLY ASP LYS ILE GLY VAL ALA SEQRES 14 N 312 ALA GLN GLN LEU SER GLU ALA SER TYR PRO PHE LEU LYS SEQRES 15 N 312 GLU ILE ASP TRP LEU SER ASP VAL TYR MET LYS PRO LEU SEQRES 16 N 312 PRO GLY VAL SER ALA GLN GLN SER LEU LYS ALA ILE ASP SEQRES 17 N 312 LYS MET ILE VAL MET GLY ALA GLN ALA ASP GLY ASN ALA SEQRES 18 N 312 LEU LYS ALA ALA ALA GLU ALA HIS HIS LYS ALA ILE GLY SEQRES 19 N 312 SER ILE ASP ALA THR GLY VAL THR SER ALA ALA ASP TYR SEQRES 20 N 312 ALA ALA VAL ASN ALA ALA LEU GLY ARG VAL ILE ALA SER SEQRES 21 N 312 VAL PRO LYS SER THR VAL MET ASP VAL TYR ASN ALA MET SEQRES 22 N 312 ALA GLY VAL THR ASP THR SER ILE PRO LEU ASN MET PHE SEQRES 23 N 312 SER LYS VAL ASN PRO LEU ASP ALA ASN ALA ALA ALA LYS SEQRES 24 N 312 ALA PHE TYR THR PHE LYS ASP VAL VAL GLN ALA ALA GLN SEQRES 1 O 312 ASP GLU ILE GLY ASP ALA ALA LYS LYS LEU GLY ASP ALA SEQRES 2 O 312 SER TYR ALA PHE ALA LYS GLU VAL ASP TRP ASN ASN GLY SEQRES 3 O 312 ILE PHE LEU GLN ALA PRO GLY LYS LEU GLN PRO LEU GLU SEQRES 4 O 312 ALA LEU LYS ALA ILE ASP LYS MET ILE VAL MET GLY ALA SEQRES 5 O 312 ALA ALA ASP PRO LYS LEU LEU LYS ALA ALA ALA GLU ALA SEQRES 6 O 312 HIS HIS LYS ALA ILE GLY SER VAL SER GLY PRO ASN GLY SEQRES 7 O 312 VAL THR SER ARG ALA ASP TRP ASP ASN VAL ASN ALA ALA SEQRES 8 O 312 LEU GLY ARG VAL ILE ALA SER VAL PRO GLU ASN MET VAL SEQRES 9 O 312 MET ASP VAL TYR ASP SER VAL SER LYS ILE THR ASP PRO SEQRES 10 O 312 LYS VAL PRO ALA TYR MET LYS SER LEU VAL ASN GLY ALA SEQRES 11 O 312 ASP ALA GLU LYS ALA TYR GLU GLY PHE LEU ALA PHE LYS SEQRES 12 O 312 ASP VAL VAL LYS LYS SER GLN VAL THR SER ALA ALA GLY SEQRES 13 O 312 PRO ALA THR VAL PRO SER GLY ASP LYS ILE GLY VAL ALA SEQRES 14 O 312 ALA GLN GLN LEU SER GLU ALA SER TYR PRO PHE LEU LYS SEQRES 15 O 312 GLU ILE ASP TRP LEU SER ASP VAL TYR MET LYS PRO LEU SEQRES 16 O 312 PRO GLY VAL SER ALA GLN GLN SER LEU LYS ALA ILE ASP SEQRES 17 O 312 LYS MET ILE VAL MET GLY ALA GLN ALA ASP GLY ASN ALA SEQRES 18 O 312 LEU LYS ALA ALA ALA GLU ALA HIS HIS LYS ALA ILE GLY SEQRES 19 O 312 SER ILE ASP ALA THR GLY VAL THR SER ALA ALA ASP TYR SEQRES 20 O 312 ALA ALA VAL ASN ALA ALA LEU GLY ARG VAL ILE ALA SER SEQRES 21 O 312 VAL PRO LYS SER THR VAL MET ASP VAL TYR ASN ALA MET SEQRES 22 O 312 ALA GLY VAL THR ASP THR SER ILE PRO LEU ASN MET PHE SEQRES 23 O 312 SER LYS VAL ASN PRO LEU ASP ALA ASN ALA ALA ALA LYS SEQRES 24 O 312 ALA PHE TYR THR PHE LYS ASP VAL VAL GLN ALA ALA GLN HET CLA M 601 137 HET CLA M 602 137 HET PID M 611 96 HET PID M 612 96 HET PID M 613 102 HET PID M 614 96 HET W4I M 615 147 HET PID M 621 96 HET PID M 622 96 HET PID M 623 192 HET PID M 624 96 HET W4I M 625 164 HET PG4 M 651 31 HET CLA N 601 137 HET CLA N 602 137 HET PID N 611 96 HET PID N 612 96 HET PID N 613 102 HET PID N 614 96 HET W4I N 615 147 HET PID N 621 96 HET PID N 622 96 HET PID N 623 192 HET PID N 624 96 HET W4I N 625 164 HET PG4 N 651 31 HET CLA O 601 137 HET CLA O 602 137 HET PID O 611 96 HET PID O 612 96 HET PID O 613 102 HET PID O 614 96 HET W4I O 615 147 HET PID O 621 96 HET PID O 622 96 HET PID O 623 192 HET PID O 624 96 HET W4I O 625 164 HET PG4 O 651 31 HETNAM CLA CHLOROPHYLL A HETNAM PID PERIDININ HETNAM W4I [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[[(2~{S}, HETNAM 2 W4I 3~{R},4~{S},5~{R},6~{R})-6-(HYDROXYMETHYL)-3,4,5- HETNAM 3 W4I TRIS(OXIDANYL)OXAN-2-YL]OXYMETHYL]-3,4,5- HETNAM 4 W4I TRIS(OXIDANYL)OXAN-2-YL]OXY-2-[(6~{Z},9~{Z},12~{Z}, HETNAM 5 W4I 15~{Z})-OCTADECA-6,9,12,15-TETRAENOYL]OXY-PROPYL] HETNAM 6 W4I (5~{Z},8~{Z},11~{Z},14~{Z},17~{Z})-ICOSA-5,8,11,14,17- HETNAM 7 W4I PENTAENOATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 4 CLA 6(C55 H72 MG N4 O5) FORMUL 6 PID 24(C39 H50 O7) FORMUL 10 W4I 6(C53 H82 O15) FORMUL 16 PG4 3(C8 H18 O5) FORMUL 43 HOH *1792(H2 O) HELIX 1 AA1 ASP M 1 VAL M 21 1 21 HELIX 2 AA2 ASN M 25 GLN M 30 5 6 HELIX 3 AA3 GLN M 36 ALA M 54 1 19 HELIX 4 AA4 ASP M 55 SER M 72 1 18 HELIX 5 AA5 SER M 81 SER M 98 1 18 HELIX 6 AA6 PRO M 100 THR M 115 1 16 HELIX 7 AA7 LYS M 118 LEU M 126 1 9 HELIX 8 AA8 ASN M 128 SER M 149 1 22 HELIX 9 AA9 ASP M 164 ILE M 184 1 21 HELIX 10 AB1 ASP M 189 LYS M 193 5 5 HELIX 11 AB2 SER M 199 ALA M 217 1 19 HELIX 12 AB3 ASP M 218 SER M 235 1 18 HELIX 13 AB4 SER M 243 ALA M 259 1 17 HELIX 14 AB5 PRO M 262 THR M 277 1 16 HELIX 15 AB6 THR M 279 LYS M 288 1 10 HELIX 16 AB7 ASN M 290 GLN M 312 1 23 HELIX 17 AB8 GLU N 2 VAL N 21 1 20 HELIX 18 AB9 ASN N 25 GLN N 30 5 6 HELIX 19 AC1 GLN N 36 ALA N 54 1 19 HELIX 20 AC2 ASP N 55 SER N 72 1 18 HELIX 21 AC3 SER N 81 SER N 98 1 18 HELIX 22 AC4 PRO N 100 THR N 115 1 16 HELIX 23 AC5 LYS N 118 LEU N 126 1 9 HELIX 24 AC6 ASN N 128 SER N 149 1 22 HELIX 25 AC7 ASP N 164 ILE N 184 1 21 HELIX 26 AC8 ASP N 189 LYS N 193 5 5 HELIX 27 AC9 SER N 199 ALA N 217 1 19 HELIX 28 AD1 ASP N 218 SER N 235 1 18 HELIX 29 AD2 SER N 243 ALA N 259 1 17 HELIX 30 AD3 PRO N 262 THR N 277 1 16 HELIX 31 AD4 THR N 279 LYS N 288 1 10 HELIX 32 AD5 ASN N 290 GLN N 312 1 23 HELIX 33 AD6 GLU O 2 VAL O 21 1 20 HELIX 34 AD7 ASN O 25 GLN O 30 5 6 HELIX 35 AD8 GLN O 36 ALA O 54 1 19 HELIX 36 AD9 ASP O 55 SER O 72 1 18 HELIX 37 AE1 SER O 81 SER O 98 1 18 HELIX 38 AE2 PRO O 100 THR O 115 1 16 HELIX 39 AE3 LYS O 118 LEU O 126 1 9 HELIX 40 AE4 ASN O 128 SER O 149 1 22 HELIX 41 AE5 ASP O 164 ILE O 184 1 21 HELIX 42 AE6 ASP O 189 LYS O 193 5 5 HELIX 43 AE7 SER O 199 ALA O 217 1 19 HELIX 44 AE8 ASP O 218 SER O 235 1 18 HELIX 45 AE9 SER O 243 ALA O 259 1 17 HELIX 46 AF1 PRO O 262 THR O 277 1 16 HELIX 47 AF2 THR O 279 LYS O 288 1 10 HELIX 48 AF3 ASN O 290 GLN O 312 1 23 LINK MG CLA M 601 O HOH M 701 1555 1555 2.05 LINK MG CLA M 602 O HOH M 702 1555 1555 2.03 LINK MG CLA N 601 O HOH N 701 1555 1555 2.06 LINK MG CLA N 602 O HOH N 702 1555 1555 2.05 LINK MG CLA O 601 O HOH O 701 1555 1555 2.03 LINK MG CLA O 602 O HOH O 702 1555 1555 2.06 CRYST1 197.140 115.610 65.880 90.00 94.97 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005073 0.000000 0.000441 0.00000 SCALE2 0.000000 0.008650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015236 0.00000