HEADER TRANSFERASE 25-APR-23 8OV7 TITLE CRYSTAL STRUCTURE OF D1228V C-MET BOUND BY COMPOUND 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HGF RECEPTOR,HGF/SF RECEPTOR,PROTO-ONCOGENE C-MET,SCATTER COMPND 5 FACTOR RECEPTOR,SF RECEPTOR,TYROSINE-PROTEIN KINASE MET; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MET; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, CANCER RESEARCH, DRUG DISCOVERY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE REVDAT 3 19-JUN-24 8OV7 1 REMARK REVDAT 2 26-JUL-23 8OV7 1 JRNL REVDAT 1 05-JUL-23 8OV7 0 JRNL AUTH I.N.MICHAELIDES,G.W.COLLIE,U.BORJESSON,C.VASALOU,O.ALKHATIB, JRNL AUTH 2 L.BARLIND,T.CHEUNG,I.L.DALE,K.J.EMBREY,E.J.HENNESSY, JRNL AUTH 3 P.KHURANA,C.M.KOH,M.L.LAMB,J.LIU,T.A.MOSS,D.J.O'NEILL, JRNL AUTH 4 C.PHILLIPS,J.SHAW,A.SNIJDER,R.I.STORER,C.J.STUBBS,F.HAN, JRNL AUTH 5 C.LI,J.QIAO,D.Q.SUN,J.WANG,P.WANG,W.YANG JRNL TITL DISCOVERY AND OPTIMIZATION OF THE FIRST ATP COMPETITIVE JRNL TITL 2 TYPE-III C-MET INHIBITOR. JRNL REF J.MED.CHEM. V. 66 8782 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37343272 JRNL DOI 10.1021/ACS.JMEDCHEM.3C00401 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (8-JUN-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 60259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.48 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3711 REMARK 3 BIN FREE R VALUE : 0.4342 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 66 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60960 REMARK 3 B22 (A**2) : 0.60960 REMARK 3 B33 (A**2) : -1.21920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.125 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.118 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.114 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2327 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3165 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 767 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 380 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2327 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 302 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2098 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1059 - 1089} REMARK 3 ORIGIN FOR THE GROUP (A): 30.9328 17.8994 7.531 REMARK 3 T TENSOR REMARK 3 T11: -0.0549 T22: 0.0071 REMARK 3 T33: -0.0001 T12: -0.0162 REMARK 3 T13: 0.0106 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 2.0627 L22: 1.1174 REMARK 3 L33: 0.7426 L12: 0.8477 REMARK 3 L13: 0.8403 L23: 1.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0645 S13: -0.1401 REMARK 3 S21: -0.0645 S22: 0.0344 S23: -0.0258 REMARK 3 S31: -0.1401 S32: -0.0258 S33: -0.0438 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|1090 - 1213} REMARK 3 ORIGIN FOR THE GROUP (A): 29.5138 4.6257 12.7149 REMARK 3 T TENSOR REMARK 3 T11: -0.021 T22: -0.0265 REMARK 3 T33: 0.0191 T12: 0.0061 REMARK 3 T13: 0.0028 T23: 0.046 REMARK 3 L TENSOR REMARK 3 L11: 0.4461 L22: 1.5299 REMARK 3 L33: 0.4629 L12: 0.407 REMARK 3 L13: -0.153 L23: -0.8299 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.0872 S13: 0.0535 REMARK 3 S21: -0.0872 S22: 0.0758 S23: 0.0143 REMARK 3 S31: 0.0535 S32: 0.0143 S33: -0.0932 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|1214 - 1248} REMARK 3 ORIGIN FOR THE GROUP (A): 25.6724 7.038 22.7524 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: -0.0827 REMARK 3 T33: 0.0507 T12: 0.0349 REMARK 3 T13: 0.0088 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 0.2998 L22: 3.3709 REMARK 3 L33: 1.1777 L12: -0.3613 REMARK 3 L13: 0.1387 L23: -0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: 0.1225 S13: -0.1931 REMARK 3 S21: 0.1225 S22: 0.1897 S23: -0.1579 REMARK 3 S31: -0.1931 S32: -0.1579 S33: -0.1276 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|1249 - 1295} REMARK 3 ORIGIN FOR THE GROUP (A): 26.6086 -1.3557 31.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.021 T22: -0.0572 REMARK 3 T33: 0.0409 T12: 0.0521 REMARK 3 T13: 0.0209 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 0.716 L22: 1.1106 REMARK 3 L33: 0.963 L12: 0.3055 REMARK 3 L13: -0.058 L23: -0.6409 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.2106 S13: -0.1942 REMARK 3 S21: 0.2106 S22: 0.1013 S23: -0.0574 REMARK 3 S31: -0.1942 S32: -0.0574 S33: -0.078 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|1296 - 1346} REMARK 3 ORIGIN FOR THE GROUP (A): 31.5631 -12.8027 29.0077 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: -0.0766 REMARK 3 T33: 0.0486 T12: 0.0329 REMARK 3 T13: -0.0174 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.4665 L22: 1.1167 REMARK 3 L33: 1.625 L12: 0.0294 REMARK 3 L13: 0.2751 L23: 0.2764 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.1519 S13: 0.077 REMARK 3 S21: 0.1519 S22: 0.0204 S23: 0.0073 REMARK 3 S31: 0.077 S32: 0.0073 S33: -0.031 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292130093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 78.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LICL, 0.1 M NA HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.21600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.82250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.82250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.60800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.82250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.82250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.82400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.82250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.82250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.60800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.82250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.82250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.82400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.21600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1038 REMARK 465 ASP A 1039 REMARK 465 SER A 1040 REMARK 465 ASP A 1041 REMARK 465 ILE A 1042 REMARK 465 SER A 1043 REMARK 465 SER A 1044 REMARK 465 PRO A 1045 REMARK 465 LEU A 1046 REMARK 465 LEU A 1047 REMARK 465 GLN A 1048 REMARK 465 ASN A 1049 REMARK 465 THR A 1050 REMARK 465 ASN A 1100 REMARK 465 ASP A 1101 REMARK 465 GLY A 1102 REMARK 465 LYS A 1103 REMARK 465 SER A 1149 REMARK 465 GLU A 1150 REMARK 465 GLY A 1151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A1081 CG OD1 ND2 REMARK 470 GLU A1082 CG CD OE1 OE2 REMARK 470 ARG A1086 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1098 CG CD1 CD2 REMARK 470 LYS A1104 CG CD CE NZ REMARK 470 LEU A1147 CG CD1 CD2 REMARK 470 ARG A1148 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1172 CG CD OE1 OE2 REMARK 470 LYS A1215 CD CE NZ REMARK 470 LYS A1232 CG CD CE NZ REMARK 470 GLU A1233 CG CD OE1 OE2 REMARK 470 LYS A1244 CE NZ REMARK 470 LYS A1259 CG CD CE NZ REMARK 470 PHE A1290 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A1307 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1325 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1203 -20.69 80.74 REMARK 500 ASP A1204 50.91 -142.57 REMARK 500 LEU A1225 58.73 -142.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OV7 A 1038 1346 UNP P08581 MET_HUMAN 1038 1346 SEQADV 8OV7 VAL A 1228 UNP P08581 ASP 1228 ENGINEERED MUTATION SEQRES 1 A 309 GLY ASP SER ASP ILE SER SER PRO LEU LEU GLN ASN THR SEQRES 2 A 309 VAL HIS ILE ASP LEU SER ALA LEU ASN PRO GLU LEU VAL SEQRES 3 A 309 GLN ALA VAL GLN HIS VAL VAL ILE GLY PRO SER SER LEU SEQRES 4 A 309 ILE VAL HIS PHE ASN GLU VAL ILE GLY ARG GLY HIS PHE SEQRES 5 A 309 GLY CYS VAL TYR HIS GLY THR LEU LEU ASP ASN ASP GLY SEQRES 6 A 309 LYS LYS ILE HIS CYS ALA VAL LYS SER LEU ASN ARG ILE SEQRES 7 A 309 THR ASP ILE GLY GLU VAL SER GLN PHE LEU THR GLU GLY SEQRES 8 A 309 ILE ILE MET LYS ASP PHE SER HIS PRO ASN VAL LEU SER SEQRES 9 A 309 LEU LEU GLY ILE CYS LEU ARG SER GLU GLY SER PRO LEU SEQRES 10 A 309 VAL VAL LEU PRO TYR MET LYS HIS GLY ASP LEU ARG ASN SEQRES 11 A 309 PHE ILE ARG ASN GLU THR HIS ASN PRO THR VAL LYS ASP SEQRES 12 A 309 LEU ILE GLY PHE GLY LEU GLN VAL ALA LYS GLY MET LYS SEQRES 13 A 309 TYR LEU ALA SER LYS LYS PHE VAL HIS ARG ASP LEU ALA SEQRES 14 A 309 ALA ARG ASN CYS MET LEU ASP GLU LYS PHE THR VAL LYS SEQRES 15 A 309 VAL ALA ASP PHE GLY LEU ALA ARG VAL MET TYR ASP LYS SEQRES 16 A 309 GLU TYR TYR SER VAL HIS ASN LYS THR GLY ALA LYS LEU SEQRES 17 A 309 PRO VAL LYS TRP MET ALA LEU GLU SER LEU GLN THR GLN SEQRES 18 A 309 LYS PHE THR THR LYS SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 A 309 LEU LEU TRP GLU LEU MET THR ARG GLY ALA PRO PRO TYR SEQRES 20 A 309 PRO ASP VAL ASN THR PHE ASP ILE THR VAL TYR LEU LEU SEQRES 21 A 309 GLN GLY ARG ARG LEU LEU GLN PRO GLU TYR CYS PRO ASP SEQRES 22 A 309 PRO LEU TYR GLU VAL MET LEU LYS CYS TRP HIS PRO LYS SEQRES 23 A 309 ALA GLU MET ARG PRO SER PHE SER GLU LEU VAL SER ARG SEQRES 24 A 309 ILE SER ALA ILE PHE SER THR PHE ILE GLY HET W3W A1401 29 HETNAM W3W 5-[3,5-BIS(FLUORANYL)PHENYL]-1-[(1S)-1-[3-(1H-IMIDAZOL- HETNAM 2 W3W 5-YL)PHENYL]ETHYL]PYRIMIDINE-2,4-DIONE FORMUL 2 W3W C21 H16 F2 N4 O2 FORMUL 3 HOH *244(H2 O) HELIX 1 AA1 ASP A 1054 LEU A 1058 5 5 HELIX 2 AA2 ASN A 1059 VAL A 1066 1 8 HELIX 3 AA3 GLY A 1072 SER A 1074 5 3 HELIX 4 AA4 ASP A 1117 ASP A 1133 1 17 HELIX 5 AA5 ASP A 1164 ASN A 1171 1 8 HELIX 6 AA6 THR A 1177 LYS A 1198 1 22 HELIX 7 AA7 ALA A 1206 ARG A 1208 5 3 HELIX 8 AA8 LYS A 1232 SER A 1236 5 5 HELIX 9 AA9 LEU A 1245 MET A 1250 5 6 HELIX 10 AB1 ALA A 1251 GLN A 1258 1 8 HELIX 11 AB2 THR A 1261 THR A 1278 1 18 HELIX 12 AB3 ASP A 1291 GLN A 1298 1 8 HELIX 13 AB4 PRO A 1309 TRP A 1320 1 12 HELIX 14 AB5 LYS A 1323 ARG A 1327 5 5 HELIX 15 AB6 SER A 1329 THR A 1343 1 15 SHEET 1 AA1 5 LEU A1076 GLY A1085 0 SHEET 2 AA1 5 VAL A1092 LEU A1097 -1 O HIS A1094 N HIS A1079 SHEET 3 AA1 5 ILE A1105 SER A1111 -1 O ILE A1105 N LEU A1097 SHEET 4 AA1 5 LEU A1154 PRO A1158 -1 O LEU A1157 N ALA A1108 SHEET 5 AA1 5 GLY A1144 CYS A1146 -1 N GLY A1144 O VAL A1156 SHEET 1 AA2 2 CYS A1210 LEU A1212 0 SHEET 2 AA2 2 VAL A1218 VAL A1220 -1 O LYS A1219 N MET A1211 CRYST1 111.645 111.645 130.432 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007667 0.00000