HEADER METAL BINDING PROTEIN 26-APR-23 8OVL TITLE NMR SOLUTION STRUCTURE OF THE HEAVY METAL BINDING DOMAIN OF P1B-ATPASE TITLE 2 LPCOPA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSLOCATING P-TYPE ATPASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUES 1-35 AND 71-83 ARE DISORDERED AND, HENCE, ARE COMPND 6 NOT MODELED IN THE COORDINATE FILE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: COPA1; SOURCE 5 EXPRESSION_SYSTEM: YEAST TWO-HYBRID VECTOR PC-ACT.1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 111295 KEYWDS ATPASE, METAL BINDING, SILB-LIKE FOLD, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.J.NIELSEN REVDAT 2 19-JUN-24 8OVL 1 REMARK REVDAT 1 31-MAY-23 8OVL 0 JRNL AUTH J.T.NIELSEN JRNL TITL NMR SOLUTION STRUCTURE OF THE HEAVY METAL BINDING DOMAIN OF JRNL TITL 2 P1B-ATPASE LPCOPA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REMARK 4 REMARK 4 8OVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292124173. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MG/ML [U-100% 13C; U-100% REMARK 210 15N] HEAVY METAL BINDING DOMAIN REMARK 210 (HMBD) OF LPCOPA, 50 MM 2-(N- REMARK 210 MORPHOLINO)ETHANESULFONIC ACID, REMARK 210 100 MM KCL, 2 MM TCEP (TRIS(2- REMARK 210 CARBOXYETHYL)PHOSPHINE), 90% H2O/ REMARK 210 10% D2O; 100 MG/ML [U-100% 13C; REMARK 210 U-100% 15N] HEAVY METAL BINDING REMARK 210 DOMAIN (HMBD) OF LPCOPA, 13 MM REMARK 210 AGNO3, 50 MM 2-(N-MORPHOLINO) REMARK 210 ETHANESULFONIC ACID, 100 MM KCL, REMARK 210 2 MM TCEP (TRIS(2-CARBOXYETHYL) REMARK 210 PHOSPHINE), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D REMARK 210 H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -34 REMARK 465 LYS A -33 REMARK 465 HIS A -32 REMARK 465 ASP A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 GLN A -28 REMARK 465 GLY A -27 REMARK 465 HIS A -26 REMARK 465 THR A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 GLY A -22 REMARK 465 LYS A -21 REMARK 465 GLY A -20 REMARK 465 HIS A -19 REMARK 465 ALA A -18 REMARK 465 CYS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLU A -14 REMARK 465 HIS A -13 REMARK 465 ASN A -12 REMARK 465 SER A -11 REMARK 465 PRO A -10 REMARK 465 LYS A -9 REMARK 465 THR A -8 REMARK 465 GLN A -7 REMARK 465 GLN A -6 REMARK 465 ALA A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 LYS A -2 REMARK 465 MET A -1 REMARK 465 GLU A 0 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 VAL A 38 REMARK 465 VAL A 39 REMARK 465 SER A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 TYR A 43 REMARK 465 LEU A 44 REMARK 465 ASP A 45 REMARK 465 MET A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 21 115.29 -31.75 REMARK 500 1 VAL A 33 165.01 46.58 REMARK 500 1 THR A 34 99.61 76.99 REMARK 500 2 CYS A 21 115.46 -34.04 REMARK 500 2 VAL A 33 115.36 57.94 REMARK 500 2 THR A 34 -33.79 -165.88 REMARK 500 3 CYS A 21 116.88 -38.86 REMARK 500 3 VAL A 33 -177.15 -176.27 REMARK 500 4 SER A 16 24.87 -77.90 REMARK 500 4 CYS A 21 115.41 -36.72 REMARK 500 4 VAL A 33 135.51 47.10 REMARK 500 4 THR A 34 -77.02 -173.45 REMARK 500 5 SER A 16 28.33 -76.94 REMARK 500 5 CYS A 21 111.75 -35.10 REMARK 500 5 MET A 26 172.32 -55.44 REMARK 500 5 VAL A 33 131.82 95.12 REMARK 500 5 THR A 34 161.19 -36.95 REMARK 500 6 CYS A 21 114.48 -34.61 REMARK 500 6 VAL A 33 128.76 85.72 REMARK 500 6 THR A 34 158.35 -39.74 REMARK 500 7 CYS A 21 112.75 -39.74 REMARK 500 7 VAL A 33 169.62 40.03 REMARK 500 7 THR A 34 77.56 78.13 REMARK 500 8 SER A 16 28.82 -78.99 REMARK 500 8 CYS A 21 121.12 -33.45 REMARK 500 8 PRO A 22 -70.91 -34.86 REMARK 500 8 VAL A 33 158.24 55.46 REMARK 500 8 THR A 34 81.85 78.03 REMARK 500 9 SER A 16 29.75 -77.44 REMARK 500 9 CYS A 21 118.43 -35.36 REMARK 500 9 VAL A 33 149.19 48.23 REMARK 500 9 THR A 34 -42.96 162.76 REMARK 500 10 SER A 16 31.87 -84.12 REMARK 500 10 CYS A 21 114.84 -33.31 REMARK 500 10 MET A 26 171.95 -58.87 REMARK 500 10 VAL A 33 126.72 54.53 REMARK 500 10 THR A 34 -85.50 -175.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34812 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF THE HEAVY METAL BINDING DOMAIN OF P1B- REMARK 900 ATPASE LPCOPA. DBREF 8OVL A -33 48 UNP Q8RNP6 Q8RNP6_LEGPN 2 83 SEQADV 8OVL GLY A -34 UNP Q8RNP6 EXPRESSION TAG SEQRES 1 A 83 GLY LYS HIS ASP HIS HIS GLN GLY HIS THR HIS SER GLY SEQRES 2 A 83 LYS GLY HIS ALA CYS HIS HIS GLU HIS ASN SER PRO LYS SEQRES 3 A 83 THR GLN GLN ALA SER SER LYS MET GLU GLY PRO ILE VAL SEQRES 4 A 83 TYR THR CYS PRO MET HIS PRO GLU ILE ARG GLN SER ALA SEQRES 5 A 83 PRO GLY HIS CYS PRO LEU CYS GLY MET ALA LEU GLU PRO SEQRES 6 A 83 GLU THR VAL THR VAL SER GLU VAL VAL SER PRO GLU TYR SEQRES 7 A 83 LEU ASP MET ARG ARG SHEET 1 AA1 3 HIS A 10 GLN A 15 0 SHEET 2 AA1 3 ILE A 3 CYS A 7 -1 N TYR A 5 O GLN A 15 SHEET 3 AA1 3 GLU A 29 THR A 32 -1 O GLU A 31 N VAL A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 204 0 0 0 3 0 0 6 257 1 0 7 END