HEADER HYDROLASE 26-APR-23 8OVR TITLE CLOSTRIDIUM PERFRINGENS CHITINASE CP56_3454 APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOSYL HYDROLASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUES [600-630] CLONING SCAR AND PURIFICATION TAGS COMPND 7 TAGS, NOT REMOVED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: CP4_3454, PNETB_00069; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS CHITINASE, TIM BARREL, NECROTIC ENTERITIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BLOCH,S.N.SAVVIDES REVDAT 1 12-JUL-23 8OVR 0 JRNL AUTH Y.BLOCH,S.N.SAVVIDES JRNL TITL CLOSTRIDIUM PERFRINGENS CHITINASE CP56_3454 APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 98108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0900 - 3.9400 1.00 6584 144 0.1427 0.1450 REMARK 3 2 3.9400 - 3.1300 1.00 6473 142 0.1387 0.1590 REMARK 3 3 3.1300 - 2.7300 1.00 6467 132 0.1452 0.1657 REMARK 3 4 2.7300 - 2.4800 1.00 6457 134 0.1374 0.1447 REMARK 3 5 2.4800 - 2.3000 1.00 6392 142 0.1330 0.1711 REMARK 3 6 2.3000 - 2.1700 1.00 6446 135 0.1309 0.1589 REMARK 3 7 2.1700 - 2.0600 1.00 6387 148 0.1548 0.1771 REMARK 3 8 2.0600 - 1.9700 1.00 6398 135 0.1490 0.1753 REMARK 3 9 1.9700 - 1.8900 1.00 6408 146 0.1442 0.1739 REMARK 3 10 1.8900 - 1.8300 1.00 6401 127 0.1646 0.1848 REMARK 3 11 1.8300 - 1.7700 1.00 6404 143 0.2224 0.2230 REMARK 3 12 1.7700 - 1.7200 1.00 6369 132 0.2869 0.3158 REMARK 3 13 1.7200 - 1.6800 1.00 6397 145 0.2603 0.2761 REMARK 3 14 1.6800 - 1.6400 1.00 6373 127 0.2547 0.2820 REMARK 3 15 1.6400 - 1.6000 0.95 6084 136 0.2865 0.3016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.191 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4649 REMARK 3 ANGLE : 1.116 6320 REMARK 3 CHIRALITY : 0.063 679 REMARK 3 PLANARITY : 0.010 818 REMARK 3 DIHEDRAL : 15.608 1720 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 25:235 OR RESID 701:701 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.336 22.220 45.116 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1427 REMARK 3 T33: 0.1528 T12: -0.0130 REMARK 3 T13: 0.0074 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.3637 L22: 0.5213 REMARK 3 L33: 0.5654 L12: -0.0692 REMARK 3 L13: 0.3711 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.0909 S13: 0.1737 REMARK 3 S21: 0.0006 S22: 0.0288 S23: 0.0543 REMARK 3 S31: -0.0234 S32: 0.0641 S33: 0.0305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 236:445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.930 0.240 37.498 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.1460 REMARK 3 T33: 0.1451 T12: -0.0158 REMARK 3 T13: 0.0083 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.2091 L22: 0.7115 REMARK 3 L33: 0.7439 L12: 0.1726 REMARK 3 L13: -0.2011 L23: -0.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.1893 S13: -0.1602 REMARK 3 S21: -0.0354 S22: 0.0646 S23: -0.0068 REMARK 3 S31: 0.0989 S32: 0.0254 S33: 0.0012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 446:596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.639 40.812 47.763 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.2182 REMARK 3 T33: 0.3315 T12: 0.0411 REMARK 3 T13: -0.0701 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.7079 L22: 0.6776 REMARK 3 L33: 0.5033 L12: -1.1018 REMARK 3 L13: 0.1062 L23: -0.4336 REMARK 3 S TENSOR REMARK 3 S11: -0.1940 S12: -0.1044 S13: 0.3797 REMARK 3 S21: 0.3090 S22: 0.0160 S23: -0.2488 REMARK 3 S31: -0.1473 S32: -0.1947 S33: 0.1370 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.120 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 65.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.13 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 44.82 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BCS E7: 0.1 M MGFORMATE 0.1 M RBCL 0.1 REMARK 280 M PIPES PH 7 25% PEG SMEAR HIGH, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.43800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.90150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.43800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.90150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1234 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 MET A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 ASP A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 THR A 597 REMARK 465 ASN A 598 REMARK 465 SER A 599 REMARK 465 PRO A 600 REMARK 465 ARG A 601 REMARK 465 ASN A 602 REMARK 465 LYS A 603 REMARK 465 GLY A 604 REMARK 465 GLU A 605 REMARK 465 LEU A 606 REMARK 465 GLU A 607 REMARK 465 GLY A 608 REMARK 465 LYS A 609 REMARK 465 PRO A 610 REMARK 465 ILE A 611 REMARK 465 PRO A 612 REMARK 465 ASN A 613 REMARK 465 PRO A 614 REMARK 465 LEU A 615 REMARK 465 LEU A 616 REMARK 465 GLY A 617 REMARK 465 LEU A 618 REMARK 465 ASP A 619 REMARK 465 SER A 620 REMARK 465 THR A 621 REMARK 465 ARG A 622 REMARK 465 THR A 623 REMARK 465 GLY A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 HIS A 630 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 188 CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 564 CD CE NZ REMARK 470 GLU A 567 CG CD OE1 OE2 REMARK 470 ASN A 570 CG OD1 ND2 REMARK 470 ASN A 571 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 432 O HOH A 801 1.51 REMARK 500 HZ3 LYS A 452 O HOH A 803 1.56 REMARK 500 O HOH A 914 O HOH A 1168 1.83 REMARK 500 O HOH A 1158 O HOH A 1302 1.89 REMARK 500 O HOH A 941 O HOH A 1167 2.09 REMARK 500 O HOH A 1236 O HOH A 1242 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 407 O HOH A 812 1545 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 160 CD GLU A 160 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 158 69.24 -110.27 REMARK 500 THR A 260 42.26 -148.16 REMARK 500 LEU A 275 66.43 -104.38 REMARK 500 TYR A 300 37.77 -94.29 REMARK 500 GLN A 307 84.67 -152.81 REMARK 500 THR A 428 -83.53 -118.94 REMARK 500 ASP A 434 11.71 -145.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1457 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1458 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1459 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1460 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 PHE A 64 O 81.6 REMARK 620 3 ASP A 125 OD2 165.9 84.3 REMARK 620 4 GLU A 177 OE1 101.4 150.8 91.1 REMARK 620 5 GLU A 177 OE2 100.3 164.3 93.2 44.5 REMARK 620 6 HOH A1055 O 92.4 89.6 87.9 61.4 105.8 REMARK 620 7 HOH A1203 O 83.3 81.7 94.3 127.5 83.0 170.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD1 REMARK 620 2 ASP A 232 OD2 24.0 REMARK 620 3 GLY A 288 O 89.2 111.6 REMARK 620 4 GLU A 290 OE2 175.2 160.3 87.4 REMARK 620 5 HOH A 832 O 89.6 98.0 89.4 87.0 REMARK 620 6 HOH A1143 O 93.4 85.3 89.1 90.0 176.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8C6Z RELATED DB: PDB REMARK 900 INHIBITOR BOUND REMARK 900 RELATED ID: 8OSE RELATED DB: PDB REMARK 900 SAME PUBLICATION REMARK 900 RELATED ID: 8OTB RELATED DB: PDB REMARK 900 SAME PUBLICATION DBREF 8OVR A 1 599 UNP F8UNI4 F8UNI4_CLOPF 1 599 SEQADV 8OVR PRO A 600 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ARG A 601 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ASN A 602 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LYS A 603 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLY A 604 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLU A 605 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LEU A 606 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLU A 607 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLY A 608 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LYS A 609 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR PRO A 610 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ILE A 611 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR PRO A 612 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ASN A 613 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR PRO A 614 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LEU A 615 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LEU A 616 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLY A 617 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR LEU A 618 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ASP A 619 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR SER A 620 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR THR A 621 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR ARG A 622 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR THR A 623 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR GLY A 624 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 625 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 626 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 627 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 628 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 629 UNP F8UNI4 EXPRESSION TAG SEQADV 8OVR HIS A 630 UNP F8UNI4 EXPRESSION TAG SEQRES 1 A 630 MET ASN THR ILE SER VAL LYS ALA MET SER LYS SER SER SEQRES 2 A 630 ASP THR THR GLU ILE THR SER GLN SER THR THR LYS LEU SEQRES 3 A 630 ARG ASN VAL MET TYR TYR GLY ASP TRP SER ILE TRP GLY SEQRES 4 A 630 GLY GLN GLY ASN PHE TYR PRO LYS ASP ILE PRO ALA ASP SEQRES 5 A 630 LYS LEU THR HIS LEU ASN PHE ALA PHE MET ASP PHE ASN SEQRES 6 A 630 SER SER GLY GLU LEU ILE TYR CYS ASP LYS ASP ALA ALA SEQRES 7 A 630 ILE GLY HIS PRO LEU GLY ASN LEU GLY VAL THR TYR GLY SEQRES 8 A 630 ASP VAL ASN GLY GLY ILE LEU ASN ALA PHE GLN VAL LEU SEQRES 9 A 630 LYS SER GLU ASN PRO ASN LEU LYS ILE GLY VAL SER LEU SEQRES 10 A 630 GLY GLY TRP SER LYS SER GLY ASP PHE SER THR ILE ALA SEQRES 11 A 630 ALA THR PRO SER ILE ARG ALA LYS PHE VAL GLU ASN VAL SEQRES 12 A 630 MET LYS PHE ILE LYS TYR THR ASN MET ASP PHE VAL ASP SEQRES 13 A 630 ILE ASP TRP GLU TYR PRO GLY ASP TYR ARG GLU PRO ASP SEQRES 14 A 630 LYS THR ASP ASN ILE ASN ASP GLU GLY THR PRO ASN ALA SEQRES 15 A 630 SER ALA GLY ASP LYS GLU ASN TYR ILE LEU LEU LEU GLN SEQRES 16 A 630 ASP LEU LYS GLU ALA LEU ASN LYS GLN GLY LYS GLU LEU SEQRES 17 A 630 GLY LYS VAL TYR GLU LEU SER VAL ALA LEU PRO ALA GLY SEQRES 18 A 630 VAL SER LYS ILE GLU LYS GLY ILE ASP VAL ASP LYS LEU SEQRES 19 A 630 PHE ASN ILE VAL ASP PHE ALA ASN ILE MET THR TYR ASP SEQRES 20 A 630 MET ALA GLY ALA TRP SER THR THR SER GLY HIS GLN THR SEQRES 21 A 630 ALA LEU TYR THR ASN PRO ASN ALA PRO GLU GLU TYR LYS SEQRES 22 A 630 GLY LEU SER VAL ASP GLU SER VAL LYS TYR TYR ILE SER SEQRES 23 A 630 GLN GLY ALA GLU ARG GLU LYS ILE VAL VAL GLY ALA ALA SEQRES 24 A 630 TYR TYR THR ARG GLY TRP GLU GLN VAL SER ASP LYS GLY SEQRES 25 A 630 THR ASP PRO ASN ASN PRO GLY LEU PHE GLY GLU ALA ALA SEQRES 26 A 630 VAL VAL ASN LYS ASP ALA ASP LEU SER PRO THR PRO GLY SEQRES 27 A 630 ALA LEU ASN GLU ALA PRO MET LYS ASN GLY GLU GLY GLY SEQRES 28 A 630 ARG ALA GLY GLY VAL TRP GLY TYR ASN ALA LEU ASP LYS SEQRES 29 A 630 LEU LYS SER LYS TYR THR GLY LEU LYS GLU TYR TRP ASP SEQRES 30 A 630 ASP SER ALA LYS ALA PRO TYR LEU TYR ASN SER GLU THR SEQRES 31 A 630 GLY ALA PHE PHE THR TYR ASP ASN ILE ARG SER ILE GLN SEQRES 32 A 630 GLU LYS ALA LYS TYR VAL LYS GLU ASN ASN LEU GLY GLY SEQRES 33 A 630 ILE ILE GLY TRP MET ALA SER GLN ASP ALA THR THR ASN SEQRES 34 A 630 SER THR LYS ARG ASP GLU LEU THR THR ALA THR LYS GLU SEQRES 35 A 630 SER LEU PHE GLY LYS GLU ASP LEU PRO LYS TYR GLU ILE SEQRES 36 A 630 LYS TYR THR GLU ASN ASP ILE THR CYS THR VAL THR PRO SEQRES 37 A 630 VAL LYS GLN SER TRP GLY SER GLY GLY VAL LEU LYS MET SEQRES 38 A 630 SER ILE THR ASN ASN GLU LYS LEU ASP GLU SER GLY GLU SEQRES 39 A 630 VAL LEU SER THR VAL GLU THR SER ALA LYS THR VAL LYS SEQRES 40 A 630 ASN MET LYS VAL TYR ILE LYS THR ASP GLY ILE ALA ILE SEQRES 41 A 630 THR GLY SER GLN TYR PRO ALA GLY PRO VAL THR LYS GLU SEQRES 42 A 630 GLY ASP TYR TYR VAL ILE ASP PHE GLY LYS ILE SER ASP SEQRES 43 A 630 GLY LYS LEU MET LYS ALA GLY ILE THR PHE THR PHE ASP SEQRES 44 A 630 LEU ASN LEU ASP LYS ALA ILE GLU ASP THR ASN ASN ILE SEQRES 45 A 630 ILE SER ILE GLU VAL SER GLN ARG MET TYR GLN THR SER SEQRES 46 A 630 PRO GLU PHE ASN ARG GLN THR ILE TRP GLU ASN THR ASN SEQRES 47 A 630 SER PRO ARG ASN LYS GLY GLU LEU GLU GLY LYS PRO ILE SEQRES 48 A 630 PRO ASN PRO LEU LEU GLY LEU ASP SER THR ARG THR GLY SEQRES 49 A 630 HIS HIS HIS HIS HIS HIS HET PIN A 701 36 HET PIN A 702 36 HET NA A 703 1 HET NA A 704 1 HET PG4 A 705 31 HETNAM PIN PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) HETNAM NA SODIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN PIN PIPES; 1,4-PIPERAZINEDIETHANESULFONIC ACID FORMUL 2 PIN 2(C8 H18 N2 O6 S2) FORMUL 4 NA 2(NA 1+) FORMUL 6 PG4 C8 H18 O5 FORMUL 7 HOH *660(H2 O) HELIX 1 AA1 TRP A 35 GLY A 42 5 8 HELIX 2 AA2 TYR A 45 ILE A 49 5 5 HELIX 3 AA3 PRO A 50 LEU A 54 5 5 HELIX 4 AA4 ASP A 74 GLY A 80 1 7 HELIX 5 AA5 GLY A 96 ASN A 108 1 13 HELIX 6 AA6 ASP A 125 THR A 132 1 8 HELIX 7 AA7 THR A 132 ASN A 151 1 20 HELIX 8 AA8 GLY A 185 GLY A 209 1 25 HELIX 9 AA9 GLY A 221 ILE A 229 1 9 HELIX 10 AB1 ASP A 230 ASN A 236 1 7 HELIX 11 AB2 PRO A 269 LYS A 273 5 5 HELIX 12 AB3 SER A 276 GLN A 287 1 12 HELIX 13 AB4 GLU A 290 GLU A 292 5 3 HELIX 14 AB5 GLY A 358 ASN A 360 5 3 HELIX 15 AB6 ALA A 361 TYR A 369 1 9 HELIX 16 AB7 ASN A 398 ASN A 412 1 15 HELIX 17 AB8 MET A 421 ASP A 425 5 5 HELIX 18 AB9 ASP A 434 GLY A 446 1 13 HELIX 19 AC1 GLY A 493 LYS A 504 1 12 HELIX 20 AC2 GLY A 542 ILE A 544 5 3 SHEET 1 AA110 LEU A 70 TYR A 72 0 SHEET 2 AA110 HIS A 56 PHE A 64 -1 N ASP A 63 O ILE A 71 SHEET 3 AA110 LYS A 112 GLY A 118 1 O SER A 116 N PHE A 59 SHEET 4 AA110 PHE A 154 ASP A 158 1 O ASP A 156 N VAL A 115 SHEET 5 AA110 GLU A 213 LEU A 218 1 O SER A 215 N VAL A 155 SHEET 6 AA110 PHE A 240 ILE A 243 1 O ASN A 242 N LEU A 218 SHEET 7 AA110 ILE A 294 ALA A 299 1 O VAL A 295 N ILE A 243 SHEET 8 AA110 GLY A 416 TRP A 420 1 O ILE A 418 N ALA A 298 SHEET 9 AA110 ARG A 27 GLY A 33 1 N VAL A 29 O ILE A 417 SHEET 10 AA110 HIS A 56 PHE A 64 1 O ASN A 58 N MET A 30 SHEET 1 AA2 4 ARG A 303 TRP A 305 0 SHEET 2 AA2 4 PHE A 393 THR A 395 -1 O THR A 395 N ARG A 303 SHEET 3 AA2 4 ALA A 382 TYR A 386 -1 N LEU A 385 O PHE A 394 SHEET 4 AA2 4 LYS A 373 ASP A 377 -1 N ASP A 377 O ALA A 382 SHEET 1 AA3 2 VAL A 308 SER A 309 0 SHEET 2 AA3 2 GLU A 323 ALA A 324 -1 O GLU A 323 N SER A 309 SHEET 1 AA4 2 ASN A 328 LYS A 329 0 SHEET 2 AA4 2 PRO A 335 THR A 336 -1 O THR A 336 N ASN A 328 SHEET 1 AA5 4 ILE A 462 VAL A 469 0 SHEET 2 AA5 4 GLY A 477 ASN A 485 -1 O LYS A 480 N THR A 467 SHEET 3 AA5 4 THR A 555 LEU A 562 -1 O PHE A 558 N MET A 481 SHEET 4 AA5 4 ILE A 520 SER A 523 -1 N GLY A 522 O ASN A 561 SHEET 1 AA6 2 VAL A 506 LYS A 507 0 SHEET 2 AA6 2 LEU A 549 MET A 550 -1 O MET A 550 N VAL A 506 SHEET 1 AA7 5 VAL A 530 GLU A 533 0 SHEET 2 AA7 5 TYR A 536 ASP A 540 -1 O VAL A 538 N THR A 531 SHEET 3 AA7 5 LYS A 510 THR A 515 -1 N ILE A 513 O TYR A 537 SHEET 4 AA7 5 ILE A 572 GLN A 579 -1 O GLU A 576 N TYR A 512 SHEET 5 AA7 5 PHE A 588 GLU A 595 -1 O ILE A 593 N ILE A 575 LINK OD1 ASP A 63 NA NA A 703 1555 1555 2.32 LINK O PHE A 64 NA NA A 703 1555 1555 2.23 LINK OD2 ASP A 125 NA NA A 703 1555 1555 2.23 LINK OE1 GLU A 177 NA NA A 703 1555 1555 3.10 LINK OE2 GLU A 177 NA NA A 703 1555 1555 2.29 LINK OD1 ASP A 232 NA NA A 704 1555 1555 2.07 LINK OD2 ASP A 232 NA NA A 704 1555 2657 2.05 LINK O GLY A 288 NA NA A 704 1555 1555 2.10 LINK OE2 GLU A 290 NA NA A 704 1555 1555 2.08 LINK NA NA A 703 O HOH A1055 1555 1555 2.34 LINK NA NA A 703 O HOH A1203 1555 1555 2.33 LINK NA NA A 704 O HOH A 832 1555 1555 2.10 LINK NA NA A 704 O HOH A1143 1555 2657 2.11 CISPEP 1 ALA A 60 PHE A 61 0 1.37 CISPEP 2 GLU A 160 TYR A 161 0 5.66 CISPEP 3 TRP A 420 MET A 421 0 -1.35 CISPEP 4 TYR A 525 PRO A 526 0 6.75 CRYST1 192.876 59.803 68.707 90.00 108.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005185 0.000000 0.001703 0.00000 SCALE2 0.000000 0.016722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015319 0.00000