HEADER HYDROLASE 06-MAY-23 8OZ1
TITLE CJCEL5D ENDO-XYLOGLUCANASE BOUNC TO CB665 COVALENT INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CELLULASE, PUTATIVE, CEL5D;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.2.1.4;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS UEDA107;
SOURCE 3 ORGANISM_TAXID: 498211;
SOURCE 4 GENE: CEL5D, CJA_3010;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS CARBOHYDRATE, INHIBITOR, COVALENT, XYLOGLUCANASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.G.S.MCGREGOR,C.DE BOER,H.S.OVERKLEEFT,G.J.DAVIES
REVDAT 3 13-NOV-24 8OZ1 1 REMARK
REVDAT 2 06-MAR-24 8OZ1 1 JRNL
REVDAT 1 28-FEB-24 8OZ1 0
JRNL AUTH N.G.S.MCGREGOR,C.DE BOER,Q.P.O.FOUCART,T.BEENAKKER,
JRNL AUTH 2 W.A.OFFEN,J.D.C.CODEE,L.I.WILLEMS,H.S.OVERKLEEFT,G.J.DAVIES
JRNL TITL A MULTIPLEXING ACTIVITY-BASED PROTEIN-PROFILING PLATFORM FOR
JRNL TITL 2 DISSECTION OF A NATIVE BACTERIAL XYLOGLUCAN-DEGRADING
JRNL TITL 3 SYSTEM.
JRNL REF ACS CENT.SCI. V. 9 2306 2023
JRNL REFN ESSN 2374-7951
JRNL PMID 38161374
JRNL DOI 10.1021/ACSCENTSCI.3C00831
REMARK 2
REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0411
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.78
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1
REMARK 3 NUMBER OF REFLECTIONS : 91862
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.134
REMARK 3 FREE R VALUE : 0.169
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.939
REMARK 3 FREE R VALUE TEST SET COUNT : 4537
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5089
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.02
REMARK 3 BIN R VALUE (WORKING SET) : 0.2610
REMARK 3 BIN FREE R VALUE SET COUNT : 273
REMARK 3 BIN FREE R VALUE : 0.2780
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2954
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 38
REMARK 3 SOLVENT ATOMS : 423
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.39
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.88800
REMARK 3 B22 (A**2) : -1.64400
REMARK 3 B33 (A**2) : 0.46000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.91900
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.045
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.204
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3115 ; 0.014 ; 0.011
REMARK 3 BOND LENGTHS OTHERS (A): 2824 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4248 ; 1.741 ; 1.644
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6487 ; 0.733 ; 1.569
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.916 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 5.304 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;14.464 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.093 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3713 ; 0.010 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 763 ; 0.008 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.271 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 25 ; 0.165 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1555 ; 0.183 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.147 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 2.084 ; 1.663
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.084 ; 1.663
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 2.610 ; 3.002
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1884 ; 2.622 ; 3.006
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1610 ; 2.503 ; 1.884
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1611 ; 2.503 ; 1.884
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2358 ; 3.182 ; 3.366
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2359 ; 3.182 ; 3.366
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5939 ; 4.329 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 8OZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-23.
REMARK 100 THE DEPOSITION ID IS D_1292130227.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 02-DEC-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91883
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300
REMARK 200 RESOLUTION RANGE LOW (A) : 51.780
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2
REMARK 200 DATA REDUNDANCY : 11.30
REMARK 200 R MERGE (I) : 0.14900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32
REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3
REMARK 200 DATA REDUNDANCY IN SHELL : 5.00
REMARK 200 R MERGE FOR SHELL (I) : 1.11300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.02
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML ENZYME IN 50 MM NAPI PH 7.0
REMARK 280 MIXED 1:1 WITH 0.1 M MIB BUFFER, PH 4, 25% PEG1500, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.56600
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 SER A 3
REMARK 465 SER A 4
REMARK 465 HIS A 5
REMARK 465 HIS A 6
REMARK 465 HIS A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 SER A 11
REMARK 465 SER A 12
REMARK 465 GLY A 13
REMARK 465 LEU A 14
REMARK 465 VAL A 15
REMARK 465 PRO A 16
REMARK 465 ARG A 17
REMARK 465 GLY A 18
REMARK 465 SER A 19
REMARK 465 HIS A 20
REMARK 465 MET A 21
REMARK 465 ALA A 22
REMARK 465 SER A 23
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 105 CG CD OE1 OE2
REMARK 470 LYS A 229 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG SER A 32 HH21 ARG A 170 1.18
REMARK 500 HD22 ASN A 134 HD1 HIS A 136 1.33
REMARK 500 ND1 HIS A 168 O HOH A 902 2.13
REMARK 500 OH TYR A 341 O HOH A 903 2.14
REMARK 500 CE1 HIS A 168 O HOH A 902 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 1319 O HOH A 1321 2555 1.49
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU A 174 CD GLU A 174 OE1 0.078
REMARK 500 GLU A 228 CD GLU A 228 OE1 0.125
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 61 -90.31 -131.25
REMARK 500 TRP A 98 -48.67 -139.71
REMARK 500 HIS A 136 -155.55 -84.18
REMARK 500 ASN A 145 50.89 -141.77
REMARK 500 ASN A 182 -83.47 -112.89
REMARK 500 VAL A 224 15.53 59.07
REMARK 500 THR A 282 -70.39 -95.83
REMARK 500 SER A 320 151.17 176.14
REMARK 500 ARG A 324 74.44 -104.75
REMARK 500 ASP A 366 -167.84 -108.82
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ASN A 134 ILE A 135 149.31
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1321 DISTANCE = 6.03 ANGSTROMS
REMARK 525 HOH A1322 DISTANCE = 6.31 ANGSTROMS
REMARK 525 HOH A1323 DISTANCE = 6.54 ANGSTROMS
REMARK 525 HOH A1324 DISTANCE = 6.75 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 RBH A 802
DBREF 8OZ1 A 24 396 UNP B3PD52 B3PD52_CELJU 96 468
SEQADV 8OZ1 MET A 1 UNP B3PD52 INITIATING METHIONINE
SEQADV 8OZ1 GLY A 2 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 3 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 4 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 5 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 6 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 7 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 8 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 9 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 10 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 11 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 12 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 GLY A 13 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 LEU A 14 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 VAL A 15 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 PRO A 16 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 ARG A 17 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 GLY A 18 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 19 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 HIS A 20 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 MET A 21 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 ALA A 22 UNP B3PD52 EXPRESSION TAG
SEQADV 8OZ1 SER A 23 UNP B3PD52 EXPRESSION TAG
SEQRES 1 A 396 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 396 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LEU TYR
SEQRES 3 A 396 PRO SER TYR ASN THR SER PRO ALA ALA PRO ASP SER THR
SEQRES 4 A 396 GLY MET GLN SER THR ALA VAL GLN LEU ALA GLY LYS ILE
SEQRES 5 A 396 ARG LEU GLY TRP ASN ILE GLY ASN THR MET GLU ALA ILE
SEQRES 6 A 396 GLY GLY GLU THR ALA TRP GLY ASN PRO MET VAL SER ASN
SEQRES 7 A 396 GLU LEU LEU LYS LEU VAL LYS ASP SER GLY PHE ASP ALA
SEQRES 8 A 396 VAL ARG ILE PRO VAL ALA TRP ASP GLN TYR ALA ASN GLN
SEQRES 9 A 396 GLU SER ALA GLU ILE SER ALA ALA TRP LEU ASN ARG VAL
SEQRES 10 A 396 LYS GLN VAL VAL GLN MET ALA ILE ASP ASN GLU LEU TYR
SEQRES 11 A 396 VAL LEU ILE ASN ILE HIS TRP ASP GLY GLY TRP LEU GLU
SEQRES 12 A 396 ASN ASN ILE THR PRO ALA LYS LYS ASP GLU ASN ASN ALA
SEQRES 13 A 396 LYS GLN LYS ALA PHE TRP GLU GLN ILE ALA THR HIS LEU
SEQRES 14 A 396 ARG ASP PHE ASP GLU HIS LEU LEU PHE ALA GLY THR ASN
SEQRES 15 A 396 GLU PRO ASN ALA GLU ASN ALA GLU GLN MET ASP VAL LEU
SEQRES 16 A 396 ASN SER TYR LEU GLN THR PHE VAL ASP ALA VAL ARG SER
SEQRES 17 A 396 THR GLY GLY LYS ASN ALA TYR ARG VAL LEU VAL LEU GLN
SEQRES 18 A 396 GLY PRO VAL THR ASP ILE GLU LYS THR ASN GLU LEU TRP
SEQRES 19 A 396 THR HIS MET PRO ALA ASP THR ALA THR ASP ARG LEU MET
SEQRES 20 A 396 ALA GLU VAL HIS PHE TYR THR PRO TYR ASN PHE ALA LEU
SEQRES 21 A 396 MET ARG GLN ASP GLU SER TRP GLY LYS GLN PHE TYR TYR
SEQRES 22 A 396 TRP GLY GLU GLY PHE LEU SER THR THR ASP THR GLU ARG
SEQRES 23 A 396 ASN PRO THR TRP GLY GLU GLU ALA THR ILE ASP GLN LEU
SEQRES 24 A 396 PHE ASP LEU MET LYS THR LYS PHE VAL ASP GLN GLY ILE
SEQRES 25 A 396 PRO VAL VAL LEU GLY GLU PHE SER ALA MET ARG ARG THR
SEQRES 26 A 396 ASN LEU THR GLY ASP ALA LEU THR LEU HIS LEU ALA GLY
SEQRES 27 A 396 ARG ALA TYR TYR HIS LYS TYR VAL THR GLN GLN ALA LEU
SEQRES 28 A 396 ALA ARG GLY LEU LEU PRO PHE TYR TRP ASP ASN GLY GLY
SEQRES 29 A 396 ASN ASP ASN PHE SER SER GLY ILE PHE ASN ARG GLN GLN
SEQRES 30 A 396 ASN THR VAL PHE ASP GLN GLN VAL LEU ASP ALA LEU LEU
SEQRES 31 A 396 GLU GLY ALA GLY ALA GLN
HET BO3 A 801 7
HET RBH A 802 22
HET YLL A 803 24
HET XYS A 804 17
HETNAM BO3 BORIC ACID
HETNAM RBH ~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(HYDROXYMETHYL)-4,5,
HETNAM 2 RBH 6-TRIS(OXIDANYL)OXAN-3-YL]-2-OXIDANYL-ETHANAMIDE
HETNAM YLL (1R,2S,3S,4S,5R,6R)-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3,
HETNAM 2 YLL 4,5-PENTOL
HETNAM XYS ALPHA-D-XYLOPYRANOSE
HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE
FORMUL 2 BO3 B H3 O3
FORMUL 3 RBH C14 H27 N4 O9 1+
FORMUL 4 YLL C7 H14 O6
FORMUL 5 XYS C5 H10 O5
FORMUL 6 HOH *423(H2 O)
HELIX 1 AA1 THR A 44 GLY A 50 1 7
HELIX 2 AA2 SER A 77 SER A 87 1 11
HELIX 3 AA3 TRP A 98 ALA A 102 5 5
HELIX 4 AA4 SER A 110 ASN A 127 1 18
HELIX 5 AA5 TRP A 137 TRP A 141 5 5
HELIX 6 AA6 THR A 147 LEU A 169 1 23
HELIX 7 AA7 ASN A 188 THR A 209 1 22
HELIX 8 AA8 GLY A 210 TYR A 215 5 6
HELIX 9 AA9 PRO A 223 THR A 225 5 3
HELIX 10 AB1 ASP A 226 TRP A 234 1 9
HELIX 11 AB2 PRO A 255 LEU A 260 1 6
HELIX 12 AB3 ASP A 283 ASN A 287 5 5
HELIX 13 AB4 GLU A 292 PHE A 307 1 16
HELIX 14 AB5 VAL A 308 GLY A 311 5 4
HELIX 15 AB6 THR A 328 ARG A 353 1 26
HELIX 16 AB7 ASP A 382 GLY A 394 1 13
SHEET 1 AA1 9 GLY A 55 ILE A 58 0
SHEET 2 AA1 9 ALA A 91 ILE A 94 1 O ARG A 93 N ILE A 58
SHEET 3 AA1 9 TYR A 130 ASN A 134 1 O LEU A 132 N ILE A 94
SHEET 4 AA1 9 LEU A 176 ALA A 179 1 O LEU A 177 N VAL A 131
SHEET 5 AA1 9 LEU A 218 GLN A 221 1 O VAL A 219 N PHE A 178
SHEET 6 AA1 9 LEU A 246 PHE A 252 1 O MET A 247 N LEU A 220
SHEET 7 AA1 9 VAL A 314 PHE A 319 1 O VAL A 315 N ALA A 248
SHEET 8 AA1 9 LEU A 355 ASP A 361 1 O TRP A 360 N PHE A 319
SHEET 9 AA1 9 GLY A 55 ILE A 58 1 N ASN A 57 O TYR A 359
SHEET 1 AA2 2 PHE A 373 ASN A 374 0
SHEET 2 AA2 2 THR A 379 VAL A 380 -1 O THR A 379 N ASN A 374
LINK OE1 GLU A 318 C1 YLL A 803 1555 1555 1.42
LINK C1 RBH A 802 O4 YLL A 803 1555 1555 1.49
LINK O6 RBH A 802 C1 XYS A 804 1555 1555 1.42
CISPEP 1 THR A 254 PRO A 255 0 -9.77
CRYST1 52.360 57.132 65.951 90.00 98.53 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019099 0.000000 0.002864 0.00000
SCALE2 0.000000 0.017503 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015332 0.00000