HEADER HYDROLASE 06-MAY-23 8OZ1 TITLE CJCEL5D ENDO-XYLOGLUCANASE BOUNC TO CB665 COVALENT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE, PUTATIVE, CEL5D; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS UEDA107; SOURCE 3 ORGANISM_TAXID: 498211; SOURCE 4 GENE: CEL5D, CJA_3010; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBOHYDRATE, INHIBITOR, COVALENT, XYLOGLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.S.MCGREGOR,C.DE BOER,H.S.OVERKLEEFT,G.J.DAVIES REVDAT 2 06-MAR-24 8OZ1 1 JRNL REVDAT 1 28-FEB-24 8OZ1 0 JRNL AUTH N.G.S.MCGREGOR,C.DE BOER,Q.P.O.FOUCART,T.BEENAKKER, JRNL AUTH 2 W.A.OFFEN,J.D.C.CODEE,L.I.WILLEMS,H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL A MULTIPLEXING ACTIVITY-BASED PROTEIN-PROFILING PLATFORM FOR JRNL TITL 2 DISSECTION OF A NATIVE BACTERIAL XYLOGLUCAN-DEGRADING JRNL TITL 3 SYSTEM. JRNL REF ACS CENT.SCI. V. 9 2306 2023 JRNL REFN ESSN 2374-7951 JRNL PMID 38161374 JRNL DOI 10.1021/ACSCENTSCI.3C00831 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 91862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.939 REMARK 3 FREE R VALUE TEST SET COUNT : 4537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88800 REMARK 3 B22 (A**2) : -1.64400 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.91900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3115 ; 0.014 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 2824 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4248 ; 1.741 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6487 ; 0.733 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 5.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;14.464 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3713 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 763 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.271 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 25 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1555 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 2.084 ; 1.663 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.084 ; 1.663 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 2.610 ; 3.002 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1884 ; 2.622 ; 3.006 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1610 ; 2.503 ; 1.884 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1611 ; 2.503 ; 1.884 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2358 ; 3.182 ; 3.366 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2359 ; 3.182 ; 3.366 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5939 ; 4.329 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8OZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 51.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 1.11300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML ENZYME IN 50 MM NAPI PH 7.0 REMARK 280 MIXED 1:1 WITH 0.1 M MIB BUFFER, PH 4, 25% PEG1500, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.56600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 229 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 32 HH21 ARG A 170 1.18 REMARK 500 HD22 ASN A 134 HD1 HIS A 136 1.33 REMARK 500 ND1 HIS A 168 O HOH A 902 2.13 REMARK 500 OH TYR A 341 O HOH A 903 2.14 REMARK 500 CE1 HIS A 168 O HOH A 902 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1319 O HOH A 1321 2555 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 174 CD GLU A 174 OE1 0.078 REMARK 500 GLU A 228 CD GLU A 228 OE1 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -90.31 -131.25 REMARK 500 TRP A 98 -48.67 -139.71 REMARK 500 HIS A 136 -155.55 -84.18 REMARK 500 ASN A 145 50.89 -141.77 REMARK 500 ASN A 182 -83.47 -112.89 REMARK 500 VAL A 224 15.53 59.07 REMARK 500 THR A 282 -70.39 -95.83 REMARK 500 SER A 320 151.17 176.14 REMARK 500 ARG A 324 74.44 -104.75 REMARK 500 ASP A 366 -167.84 -108.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 134 ILE A 135 149.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1321 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1323 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.75 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RBH A 802 DBREF 8OZ1 A 24 396 UNP B3PD52 B3PD52_CELJU 96 468 SEQADV 8OZ1 MET A 1 UNP B3PD52 INITIATING METHIONINE SEQADV 8OZ1 GLY A 2 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 3 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 4 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 5 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 6 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 7 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 8 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 9 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 10 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 11 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 12 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 GLY A 13 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 LEU A 14 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 VAL A 15 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 PRO A 16 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 ARG A 17 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 GLY A 18 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 19 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 HIS A 20 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 MET A 21 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 ALA A 22 UNP B3PD52 EXPRESSION TAG SEQADV 8OZ1 SER A 23 UNP B3PD52 EXPRESSION TAG SEQRES 1 A 396 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 396 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY LEU TYR SEQRES 3 A 396 PRO SER TYR ASN THR SER PRO ALA ALA PRO ASP SER THR SEQRES 4 A 396 GLY MET GLN SER THR ALA VAL GLN LEU ALA GLY LYS ILE SEQRES 5 A 396 ARG LEU GLY TRP ASN ILE GLY ASN THR MET GLU ALA ILE SEQRES 6 A 396 GLY GLY GLU THR ALA TRP GLY ASN PRO MET VAL SER ASN SEQRES 7 A 396 GLU LEU LEU LYS LEU VAL LYS ASP SER GLY PHE ASP ALA SEQRES 8 A 396 VAL ARG ILE PRO VAL ALA TRP ASP GLN TYR ALA ASN GLN SEQRES 9 A 396 GLU SER ALA GLU ILE SER ALA ALA TRP LEU ASN ARG VAL SEQRES 10 A 396 LYS GLN VAL VAL GLN MET ALA ILE ASP ASN GLU LEU TYR SEQRES 11 A 396 VAL LEU ILE ASN ILE HIS TRP ASP GLY GLY TRP LEU GLU SEQRES 12 A 396 ASN ASN ILE THR PRO ALA LYS LYS ASP GLU ASN ASN ALA SEQRES 13 A 396 LYS GLN LYS ALA PHE TRP GLU GLN ILE ALA THR HIS LEU SEQRES 14 A 396 ARG ASP PHE ASP GLU HIS LEU LEU PHE ALA GLY THR ASN SEQRES 15 A 396 GLU PRO ASN ALA GLU ASN ALA GLU GLN MET ASP VAL LEU SEQRES 16 A 396 ASN SER TYR LEU GLN THR PHE VAL ASP ALA VAL ARG SER SEQRES 17 A 396 THR GLY GLY LYS ASN ALA TYR ARG VAL LEU VAL LEU GLN SEQRES 18 A 396 GLY PRO VAL THR ASP ILE GLU LYS THR ASN GLU LEU TRP SEQRES 19 A 396 THR HIS MET PRO ALA ASP THR ALA THR ASP ARG LEU MET SEQRES 20 A 396 ALA GLU VAL HIS PHE TYR THR PRO TYR ASN PHE ALA LEU SEQRES 21 A 396 MET ARG GLN ASP GLU SER TRP GLY LYS GLN PHE TYR TYR SEQRES 22 A 396 TRP GLY GLU GLY PHE LEU SER THR THR ASP THR GLU ARG SEQRES 23 A 396 ASN PRO THR TRP GLY GLU GLU ALA THR ILE ASP GLN LEU SEQRES 24 A 396 PHE ASP LEU MET LYS THR LYS PHE VAL ASP GLN GLY ILE SEQRES 25 A 396 PRO VAL VAL LEU GLY GLU PHE SER ALA MET ARG ARG THR SEQRES 26 A 396 ASN LEU THR GLY ASP ALA LEU THR LEU HIS LEU ALA GLY SEQRES 27 A 396 ARG ALA TYR TYR HIS LYS TYR VAL THR GLN GLN ALA LEU SEQRES 28 A 396 ALA ARG GLY LEU LEU PRO PHE TYR TRP ASP ASN GLY GLY SEQRES 29 A 396 ASN ASP ASN PHE SER SER GLY ILE PHE ASN ARG GLN GLN SEQRES 30 A 396 ASN THR VAL PHE ASP GLN GLN VAL LEU ASP ALA LEU LEU SEQRES 31 A 396 GLU GLY ALA GLY ALA GLN HET BO3 A 801 7 HET RBH A 802 22 HET YLL A 803 24 HET XYS A 804 17 HETNAM BO3 BORIC ACID HETNAM RBH ~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(HYDROXYMETHYL)-4,5, HETNAM 2 RBH 6-TRIS(OXIDANYL)OXAN-3-YL]-2-OXIDANYL-ETHANAMIDE HETNAM YLL (1R,2S,3S,4S,5R,6R)-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3, HETNAM 2 YLL 4,5-PENTOL HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 2 BO3 B H3 O3 FORMUL 3 RBH C14 H27 N4 O9 1+ FORMUL 4 YLL C7 H14 O6 FORMUL 5 XYS C5 H10 O5 FORMUL 6 HOH *423(H2 O) HELIX 1 AA1 THR A 44 GLY A 50 1 7 HELIX 2 AA2 SER A 77 SER A 87 1 11 HELIX 3 AA3 TRP A 98 ALA A 102 5 5 HELIX 4 AA4 SER A 110 ASN A 127 1 18 HELIX 5 AA5 TRP A 137 TRP A 141 5 5 HELIX 6 AA6 THR A 147 LEU A 169 1 23 HELIX 7 AA7 ASN A 188 THR A 209 1 22 HELIX 8 AA8 GLY A 210 TYR A 215 5 6 HELIX 9 AA9 PRO A 223 THR A 225 5 3 HELIX 10 AB1 ASP A 226 TRP A 234 1 9 HELIX 11 AB2 PRO A 255 LEU A 260 1 6 HELIX 12 AB3 ASP A 283 ASN A 287 5 5 HELIX 13 AB4 GLU A 292 PHE A 307 1 16 HELIX 14 AB5 VAL A 308 GLY A 311 5 4 HELIX 15 AB6 THR A 328 ARG A 353 1 26 HELIX 16 AB7 ASP A 382 GLY A 394 1 13 SHEET 1 AA1 9 GLY A 55 ILE A 58 0 SHEET 2 AA1 9 ALA A 91 ILE A 94 1 O ARG A 93 N ILE A 58 SHEET 3 AA1 9 TYR A 130 ASN A 134 1 O LEU A 132 N ILE A 94 SHEET 4 AA1 9 LEU A 176 ALA A 179 1 O LEU A 177 N VAL A 131 SHEET 5 AA1 9 LEU A 218 GLN A 221 1 O VAL A 219 N PHE A 178 SHEET 6 AA1 9 LEU A 246 PHE A 252 1 O MET A 247 N LEU A 220 SHEET 7 AA1 9 VAL A 314 PHE A 319 1 O VAL A 315 N ALA A 248 SHEET 8 AA1 9 LEU A 355 ASP A 361 1 O TRP A 360 N PHE A 319 SHEET 9 AA1 9 GLY A 55 ILE A 58 1 N ASN A 57 O TYR A 359 SHEET 1 AA2 2 PHE A 373 ASN A 374 0 SHEET 2 AA2 2 THR A 379 VAL A 380 -1 O THR A 379 N ASN A 374 LINK OE1 GLU A 318 C1 YLL A 803 1555 1555 1.42 LINK C1 RBH A 802 O4 YLL A 803 1555 1555 1.49 LINK O6 RBH A 802 C1 XYS A 804 1555 1555 1.42 CISPEP 1 THR A 254 PRO A 255 0 -9.77 CRYST1 52.360 57.132 65.951 90.00 98.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019099 0.000000 0.002864 0.00000 SCALE2 0.000000 0.017503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015332 0.00000