HEADER CYTOSOLIC PROTEIN 17-MAY-23 8P3G TITLE FUSION HSLP2-A_RAB27A BOUND TO COVALENT HIT FRAGMENT IMP-1704 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOTAGMIN-LIKE PROTEIN 2,RAS-RELATED PROTEIN RAB-27A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BREAST CANCER-ASSOCIATED ANTIGEN SGA-72M,EXOPHILIN-4,RAB-27, COMPND 5 GTP-BINDING PROTEIN RAM; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYTL2, KIAA1597, SGA72M, SLP2, SLP2A, RAB27A, RAB27; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SMALL GTPASE, TARGETED COVALENT INHIBITORS, HIGH THROUGHPUT KEYWDS 2 SCREENING, DRUG DISCOVERY, VESICLE TRAFFICKING, BREAST CANCER, KEYWDS 3 CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DE VITA,D.BRUSTUR,M.TERSA,R.PETRACCA,R.M.L.MORGAN,T.LANYON-HOGG, AUTHOR 2 J.C.NORMAN,E.COTA,E.W.TATE REVDAT 1 20-NOV-24 8P3G 0 JRNL AUTH E.DE VITA,D.BRUSTUR,M.TERSA,R.PETRACCA,R.M.L.MORGAN, JRNL AUTH 2 T.LANYON-HOGG,J.C.NORMAN,E.COTA,E.W.TATE JRNL TITL TARGETED COVALENT INHIBITORS OF THE SMALL GTPASE RAB27A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17_3644: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.4200 - 4.8800 1.00 2715 163 0.2000 0.2278 REMARK 3 2 4.8700 - 3.8700 1.00 2620 127 0.1489 0.1846 REMARK 3 3 3.8700 - 3.3800 1.00 2555 151 0.1691 0.2351 REMARK 3 4 3.3800 - 3.0700 1.00 2544 138 0.1770 0.2136 REMARK 3 5 3.0700 - 2.8500 1.00 2547 134 0.1902 0.2420 REMARK 3 6 2.8500 - 2.6800 1.00 2559 122 0.1989 0.2518 REMARK 3 7 2.6800 - 2.5500 1.00 2548 112 0.1969 0.2668 REMARK 3 8 2.5500 - 2.4400 1.00 2504 139 0.2027 0.2776 REMARK 3 9 2.4400 - 2.3400 1.00 2510 138 0.2218 0.3187 REMARK 3 10 2.3400 - 2.2600 1.00 2533 135 0.2288 0.3071 REMARK 3 11 2.2600 - 2.1900 1.00 2488 122 0.2486 0.3140 REMARK 3 12 2.1900 - 2.1300 0.99 2473 133 0.2607 0.3066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3579 REMARK 3 ANGLE : 0.919 4822 REMARK 3 CHIRALITY : 0.046 519 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 26.240 507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292128684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32270 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 59.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M NH4SO4, 0.1 M MES, PH6.0, 15% REMARK 280 PEG 4K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.14950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.42300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.01550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.42300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.14950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.01550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -11A REMARK 465 GLU A -11B REMARK 465 ARG A -11C REMARK 465 GLY A -11D REMARK 465 SER A -11E REMARK 465 GLY A -11F REMARK 465 SER A -11G REMARK 465 GLY A -11H REMARK 465 SER A -11I REMARK 465 GLY A -11J REMARK 465 MET A -11K REMARK 465 SER A -11L REMARK 465 ASP A -11M REMARK 465 GLY A -11N REMARK 465 ASP A -11O REMARK 465 VAL A 173 REMARK 465 ASP A 174 REMARK 465 LYS A 175 REMARK 465 SER A 176 REMARK 465 GLY B -38 REMARK 465 HIS B -37 REMARK 465 MET B -36 REMARK 465 GLY B -8A REMARK 465 SER B -8B REMARK 465 GLY B -8C REMARK 465 SER B -8D REMARK 465 GLY B -8E REMARK 465 SER B -8F REMARK 465 GLY B -8G REMARK 465 MET B -8H REMARK 465 SER B -8I REMARK 465 ASP B -8J REMARK 465 GLY B -8K REMARK 465 ASP B -8L REMARK 465 GLY B 43A REMARK 465 PRO B 43B REMARK 465 ASP B 43C REMARK 465 GLY B 43D REMARK 465 VAL B 172 REMARK 465 ASP B 173 REMARK 465 LYS B 174 REMARK 465 SER B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -30 CG CD OE1 OE2 REMARK 470 TYR A -10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A -9 CG OD1 OD2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 GLU B -31 CG CD OE1 OE2 REMARK 470 GLU B -27 CG CD OE1 OE2 REMARK 470 GLU B -9 CG CD OE1 OE2 REMARK 470 ASP B -6 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B -2 O26 WTU B 206 1.30 REMARK 500 O TYR B 105 N CYS B 106 1.77 REMARK 500 OE2 GLU B 87 O HOH B 301 2.06 REMARK 500 CE LYS B -2 O26 WTU B 206 2.19 REMARK 500 O HOH B 361 O HOH B 395 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 425 O HOH B 369 2554 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 106 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 TYR B 105 O - C - N ANGL. DEV. = -39.8 DEGREES REMARK 500 CYS B 106 C - N - CA ANGL. DEV. = 26.7 DEGREES REMARK 500 CYS B 106 O - C - N ANGL. DEV. = -28.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 75.12 35.09 REMARK 500 GLU B -9 87.41 -67.18 REMARK 500 ASP B -6 -72.59 -67.02 REMARK 500 TYR B 105 66.06 -113.24 REMARK 500 CYS B 106 119.89 157.64 REMARK 500 GLU B 107 135.51 -39.06 REMARK 500 LEU B 120 62.82 -100.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 105 CYS B 106 -137.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 106 -25.56 REMARK 500 TYR B 105 -40.05 REMARK 500 CYS B 106 33.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 486 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 487 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH B 421 DISTANCE = 5.87 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 WTU B 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 7 OG1 REMARK 620 2 THR A 25 OG1 82.9 REMARK 620 3 GNP A 202 O3G 170.9 89.0 REMARK 620 4 GNP A 202 O1B 94.9 175.7 93.4 REMARK 620 5 HOH A 309 O 91.9 86.9 92.0 89.5 REMARK 620 6 HOH A 336 O 89.1 92.8 87.0 90.8 178.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 10 OG1 REMARK 620 2 THR B 28 OG1 83.5 REMARK 620 3 GNP B 202 O3G 177.7 94.7 REMARK 620 4 GNP B 202 O2B 90.9 174.3 91.0 REMARK 620 5 HOH B 327 O 89.6 91.9 91.8 87.6 REMARK 620 6 HOH B 338 O 84.9 92.4 93.9 87.5 172.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OPP RELATED DB: PDB DBREF 8P3G A -35 -11C UNP Q9HCH5 SYTL2_HUMAN 5 32 DBREF 8P3G A -11K 176 UNP P51159 RB27A_HUMAN 1 192 DBREF 8P3G B -35 -8 UNP Q9HCH5 SYTL2_HUMAN 5 32 DBREF 8P3G B -8H 175 UNP P51159 RB27A_HUMAN 1 192 SEQADV 8P3G GLY A -38 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G HIS A -37 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G MET A -36 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G GLY A -11D UNP Q9HCH5 LINKER SEQADV 8P3G SER A -11E UNP Q9HCH5 LINKER SEQADV 8P3G GLY A -11F UNP Q9HCH5 LINKER SEQADV 8P3G SER A -11G UNP Q9HCH5 LINKER SEQADV 8P3G GLY A -11H UNP Q9HCH5 LINKER SEQADV 8P3G SER A -11I UNP Q9HCH5 LINKER SEQADV 8P3G GLY A -11J UNP Q9HCH5 LINKER SEQADV 8P3G LEU A 62 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 8P3G SER A 172 UNP P51159 CYS 188 ENGINEERED MUTATION SEQADV 8P3G GLY B -38 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G HIS B -37 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G MET B -36 UNP Q9HCH5 EXPRESSION TAG SEQADV 8P3G GLY B -8A UNP Q9HCH5 LINKER SEQADV 8P3G SER B -8B UNP Q9HCH5 LINKER SEQADV 8P3G GLY B -8C UNP Q9HCH5 LINKER SEQADV 8P3G SER B -8D UNP Q9HCH5 LINKER SEQADV 8P3G GLY B -8E UNP Q9HCH5 LINKER SEQADV 8P3G SER B -8F UNP Q9HCH5 LINKER SEQADV 8P3G GLY B -8G UNP Q9HCH5 LINKER SEQADV 8P3G LEU B 61 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 8P3G SER B 171 UNP P51159 CYS 188 ENGINEERED MUTATION SEQRES 1 A 230 GLY HIS MET SER PHE LEU THR GLU GLU GLU GLN GLU ALA SEQRES 2 A 230 ILE MET LYS VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG SEQRES 3 A 230 ALA GLU GLU GLU ARG GLY SER GLY SER GLY SER GLY MET SEQRES 4 A 230 SER ASP GLY ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA SEQRES 5 A 230 LEU GLY ASP SER GLY VAL GLY LYS THR SER VAL LEU TYR SEQRES 6 A 230 GLN TYR THR ASP GLY LYS PHE ASN SER LYS PHE ILE THR SEQRES 7 A 230 THR VAL GLY ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR SEQRES 8 A 230 ARG ALA SER GLY PRO ASP GLY ALA THR GLY ARG GLY GLN SEQRES 9 A 230 ARG ILE HIS LEU GLN LEU TRP ASP THR ALA GLY LEU GLU SEQRES 10 A 230 ARG PHE ARG SER LEU THR THR ALA PHE PHE ARG ASP ALA SEQRES 11 A 230 MET GLY PHE LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SEQRES 12 A 230 SER PHE LEU ASN VAL ARG ASN TRP ILE SER GLN LEU GLN SEQRES 13 A 230 MET HIS ALA TYR CYS GLU ASN PRO ASP ILE VAL LEU CYS SEQRES 14 A 230 GLY ASN LYS SER ASP LEU GLU ASP GLN ARG VAL VAL LYS SEQRES 15 A 230 GLU GLU GLU ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE SEQRES 16 A 230 PRO TYR PHE GLU THR SER ALA ALA ASN GLY THR ASN ILE SEQRES 17 A 230 SER GLN ALA ILE GLU MET LEU LEU ASP LEU ILE MET LYS SEQRES 18 A 230 ARG MET GLU ARG SER VAL ASP LYS SER SEQRES 1 B 230 GLY HIS MET SER PHE LEU THR GLU GLU GLU GLN GLU ALA SEQRES 2 B 230 ILE MET LYS VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG SEQRES 3 B 230 ALA GLU GLU GLU ARG GLY SER GLY SER GLY SER GLY MET SEQRES 4 B 230 SER ASP GLY ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA SEQRES 5 B 230 LEU GLY ASP SER GLY VAL GLY LYS THR SER VAL LEU TYR SEQRES 6 B 230 GLN TYR THR ASP GLY LYS PHE ASN SER LYS PHE ILE THR SEQRES 7 B 230 THR VAL GLY ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR SEQRES 8 B 230 ARG ALA SER GLY PRO ASP GLY ALA THR GLY ARG GLY GLN SEQRES 9 B 230 ARG ILE HIS LEU GLN LEU TRP ASP THR ALA GLY LEU GLU SEQRES 10 B 230 ARG PHE ARG SER LEU THR THR ALA PHE PHE ARG ASP ALA SEQRES 11 B 230 MET GLY PHE LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SEQRES 12 B 230 SER PHE LEU ASN VAL ARG ASN TRP ILE SER GLN LEU GLN SEQRES 13 B 230 MET HIS ALA TYR CYS GLU ASN PRO ASP ILE VAL LEU CYS SEQRES 14 B 230 GLY ASN LYS SER ASP LEU GLU ASP GLN ARG VAL VAL LYS SEQRES 15 B 230 GLU GLU GLU ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE SEQRES 16 B 230 PRO TYR PHE GLU THR SER ALA ALA ASN GLY THR ASN ILE SEQRES 17 B 230 SER GLN ALA ILE GLU MET LEU LEU ASP LEU ILE MET LYS SEQRES 18 B 230 ARG MET GLU ARG SER VAL ASP LYS SER HET GOL A 201 6 HET GNP A 202 32 HET GOL A 203 6 HET GOL A 204 6 HET WTU A 205 19 HET MG A 206 1 HET GOL B 201 6 HET GNP B 202 32 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET WTU B 206 19 HET MG B 207 1 HETNAM GOL GLYCEROL HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM WTU ~{N}-(4-PYRROLIDIN-1-YLSULFONYLPHENYL)PROPANAMIDE HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN WTU WT6 FORMUL 3 GOL 7(C3 H8 O3) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 7 WTU 2(C13 H18 N2 O3 S) FORMUL 8 MG 2(MG 2+) FORMUL 16 HOH *308(H2 O) HELIX 1 AA1 THR A -32 ALA A -12 1 21 HELIX 2 AA2 GLY A 5 GLY A 16 1 12 HELIX 3 AA3 GLY A 41 ALA A 45 5 5 HELIX 4 AA4 LEU A 62 ARG A 64 5 3 HELIX 5 AA5 PHE A 65 ALA A 71 1 7 HELIX 6 AA6 PHE A 72 ALA A 76 5 5 HELIX 7 AA7 ASN A 87 ASN A 93 1 7 HELIX 8 AA8 ASN A 93 ALA A 105 1 13 HELIX 9 AA9 LEU A 121 ARG A 125 5 5 HELIX 10 AB1 LYS A 128 GLY A 140 1 13 HELIX 11 AB2 ASN A 153 SER A 172 1 20 HELIX 12 AB3 THR B -32 GLU B -9 1 24 HELIX 13 AB4 GLY B 8 GLY B 19 1 12 HELIX 14 AB5 LEU B 61 ARG B 63 5 3 HELIX 15 AB6 PHE B 64 ALA B 70 1 7 HELIX 16 AB7 PHE B 71 ALA B 75 5 5 HELIX 17 AB8 ASN B 86 ASN B 92 1 7 HELIX 18 AB9 ASN B 92 ALA B 104 1 13 HELIX 19 AC1 LEU B 120 ARG B 124 5 5 HELIX 20 AC2 LYS B 127 TYR B 138 1 12 HELIX 21 AC3 ASN B 152 GLU B 169 1 18 SHEET 1 AA1 6 ILE A 28 ARG A 38 0 SHEET 2 AA1 6 GLY A 49 THR A 59 -1 O LEU A 56 N ARG A 31 SHEET 3 AA1 6 TYR A -8 LEU A -1 1 N TYR A -8 O HIS A 53 SHEET 4 AA1 6 PHE A 79 ASP A 84 1 O LEU A 82 N LEU A -1 SHEET 5 AA1 6 ILE A 112 ASN A 117 1 O CYS A 115 N LEU A 81 SHEET 6 AA1 6 TYR A 143 GLU A 145 1 O PHE A 144 N GLY A 116 SHEET 1 AA2 6 ILE B 31 TYR B 40 0 SHEET 2 AA2 6 GLN B 49 THR B 58 -1 O ASP B 57 N ASP B 32 SHEET 3 AA2 6 TYR B -5 LEU B 2 1 N ILE B -3 O HIS B 52 SHEET 4 AA2 6 PHE B 78 ASP B 83 1 O LEU B 79 N LEU B 0 SHEET 5 AA2 6 ILE B 111 ASN B 116 1 O CYS B 114 N LEU B 80 SHEET 6 AA2 6 TYR B 142 GLU B 144 1 O PHE B 143 N GLY B 115 LINK SG CYS A 107 C12 WTU A 205 1555 1555 1.83 LINK SG CYS B 106 C12 WTU B 206 1555 1555 1.85 LINK OG1 THR A 7 MG MG A 206 1555 1555 2.00 LINK OG1 THR A 25 MG MG A 206 1555 1555 2.13 LINK O3G GNP A 202 MG MG A 206 1555 1555 2.06 LINK O1B GNP A 202 MG MG A 206 1555 1555 1.98 LINK MG MG A 206 O HOH A 309 1555 1555 2.25 LINK MG MG A 206 O HOH A 336 1555 1555 2.16 LINK OG1 THR B 10 MG MG B 207 1555 1555 2.05 LINK OG1 THR B 28 MG MG B 207 1555 1555 2.07 LINK O3G GNP B 202 MG MG B 207 1555 1555 2.00 LINK O2B GNP B 202 MG MG B 207 1555 1555 2.10 LINK MG MG B 207 O HOH B 327 1555 1555 1.98 LINK MG MG B 207 O HOH B 338 1555 1555 2.08 CRYST1 62.299 76.031 118.846 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008414 0.00000