HEADER OXIDOREDUCTASE 19-MAY-23 8P47 TITLE IPNS VARIANT N252A IN COMPLEX WITH FE AND ACV UNDER ANAEROBIC TITLE 2 CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 05-JUN-24 8P47 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL IPNS VARIANT N252A IN COMPLEX WITH FE AND ACV UNDER JRNL TITL 2 ANAEROBIC CONDITIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 2186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.7300 - 3.9300 1.00 2932 152 0.1529 0.1701 REMARK 3 2 3.9300 - 3.1200 1.00 2819 136 0.1446 0.1689 REMARK 3 3 3.1200 - 2.7300 1.00 2754 138 0.1585 0.1810 REMARK 3 4 2.7300 - 2.4800 1.00 2732 155 0.1639 0.1987 REMARK 3 5 2.4800 - 2.3000 1.00 2745 136 0.1574 0.2107 REMARK 3 6 2.3000 - 2.1600 1.00 2719 138 0.1781 0.2178 REMARK 3 7 2.1600 - 2.0600 1.00 2738 134 0.1774 0.2067 REMARK 3 8 2.0600 - 1.9700 1.00 2671 147 0.1843 0.2384 REMARK 3 9 1.9700 - 1.8900 1.00 2708 136 0.2477 0.2909 REMARK 3 10 1.8900 - 1.8200 1.00 2664 147 0.2343 0.2614 REMARK 3 11 1.8200 - 1.7700 1.00 2747 132 0.2368 0.2910 REMARK 3 12 1.7700 - 1.7200 1.00 2692 129 0.2454 0.2566 REMARK 3 13 1.7200 - 1.6700 1.00 2701 114 0.2617 0.3207 REMARK 3 14 1.6700 - 1.6300 1.00 2717 137 0.2675 0.2695 REMARK 3 15 1.6300 - 1.5900 1.00 2668 126 0.3042 0.3152 REMARK 3 16 1.5900 - 1.5600 1.00 2683 129 0.3163 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2808 REMARK 3 ANGLE : 0.624 3842 REMARK 3 CHIRALITY : 0.047 399 REMARK 3 PLANARITY : 0.005 513 REMARK 3 DIHEDRAL : 12.098 1016 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5684 -4.7984 14.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1573 REMARK 3 T33: 0.1263 T12: -0.0064 REMARK 3 T13: 0.0217 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.4564 L22: 3.9975 REMARK 3 L33: 3.4606 L12: -0.2284 REMARK 3 L13: 0.0224 L23: 2.5710 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: -0.0962 S13: -0.0245 REMARK 3 S21: 0.1350 S22: -0.0692 S23: 0.0623 REMARK 3 S31: 0.1116 S32: -0.2370 S33: 0.0169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5978 0.9851 -1.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1269 REMARK 3 T33: 0.1434 T12: -0.0138 REMARK 3 T13: -0.0283 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.7838 L22: 0.9569 REMARK 3 L33: 3.6068 L12: -0.3141 REMARK 3 L13: -0.8674 L23: -0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.0656 S13: 0.0109 REMARK 3 S21: -0.0153 S22: 0.0626 S23: 0.0850 REMARK 3 S31: -0.0908 S32: -0.3831 S33: -0.1462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0193 6.6867 -24.0425 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.1250 REMARK 3 T33: 0.0885 T12: -0.0011 REMARK 3 T13: -0.0094 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 7.2303 L22: 5.5261 REMARK 3 L33: 4.5784 L12: 1.2756 REMARK 3 L13: -3.2489 L23: 0.1345 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: 0.3449 S13: 0.2423 REMARK 3 S21: -0.0079 S22: -0.0559 S23: 0.1039 REMARK 3 S31: -0.5444 S32: -0.1709 S33: -0.0952 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4402 10.3528 -13.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1224 REMARK 3 T33: 0.1224 T12: -0.0156 REMARK 3 T13: 0.0282 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.8842 L22: 1.3920 REMARK 3 L33: 1.9830 L12: 0.3780 REMARK 3 L13: 0.1376 L23: 0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.0911 S13: 0.0919 REMARK 3 S21: -0.0913 S22: 0.1227 S23: -0.0469 REMARK 3 S31: -0.4971 S32: 0.1092 S33: -0.0522 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4281 9.4562 2.4935 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1028 REMARK 3 T33: 0.1288 T12: 0.0151 REMARK 3 T13: 0.0166 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.9828 L22: 1.4489 REMARK 3 L33: 4.5544 L12: -0.7501 REMARK 3 L13: 0.9124 L23: -1.0764 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0223 S13: 0.0711 REMARK 3 S21: -0.0758 S22: 0.0116 S23: 0.0787 REMARK 3 S31: -0.3724 S32: -0.2504 S33: -0.0998 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7925 9.7558 8.7716 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1710 REMARK 3 T33: 0.1689 T12: -0.0391 REMARK 3 T13: 0.0090 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 1.3394 REMARK 3 L33: 4.6428 L12: -0.4514 REMARK 3 L13: 0.5285 L23: -0.9930 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.0269 S13: 0.0996 REMARK 3 S21: 0.1707 S22: 0.0082 S23: -0.1304 REMARK 3 S31: -0.7206 S32: 0.4068 S33: 0.0325 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5754 -8.8689 -3.9247 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.1253 REMARK 3 T33: 0.1414 T12: 0.0020 REMARK 3 T13: 0.0188 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0836 L22: 0.9548 REMARK 3 L33: 1.8943 L12: -0.0710 REMARK 3 L13: 0.3662 L23: 0.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: -0.0383 S13: -0.1234 REMARK 3 S21: -0.0461 S22: 0.0044 S23: 0.0279 REMARK 3 S31: 0.1474 S32: -0.0168 S33: -0.0239 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5789 2.0204 10.1124 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.4853 REMARK 3 T33: 0.2342 T12: -0.0180 REMARK 3 T13: -0.0231 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.1765 L22: 1.0465 REMARK 3 L33: 2.6603 L12: 0.3134 REMARK 3 L13: -0.4580 L23: -0.3051 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: -0.3949 S13: -0.2466 REMARK 3 S21: 0.1775 S22: -0.1209 S23: -0.2483 REMARK 3 S31: 0.0224 S32: 1.0190 S33: 0.0785 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6429 -1.3035 -8.4279 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.2737 REMARK 3 T33: 0.2123 T12: -0.0055 REMARK 3 T13: 0.0160 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.1308 L22: 2.0784 REMARK 3 L33: 2.6722 L12: -0.0042 REMARK 3 L13: -0.4670 L23: 1.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.0389 S13: -0.0684 REMARK 3 S21: -0.1979 S22: 0.1722 S23: -0.1356 REMARK 3 S31: -0.0186 S32: 0.3175 S33: -0.1494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292129143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 4 UM X 4 UM X 140 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.3, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.83750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.72950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.72950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.83750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CZ NH1 NH2 REMARK 470 GLN A 56 OE1 NE2 REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 LYS A 266 CE NZ REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ASP A 307 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 572 O HOH A 654 2.13 REMARK 500 OE1 GLU A 309 O HOH A 501 2.15 REMARK 500 OH TYR A 224 O HOH A 502 2.15 REMARK 500 O HOH A 543 O HOH A 707 2.16 REMARK 500 O HOH A 575 O HOH A 576 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -115.76 -94.76 REMARK 500 ASP A 38 -115.76 -93.89 REMARK 500 HIS A 82 61.96 -112.07 REMARK 500 LYS A 97 -44.17 -133.53 REMARK 500 THR A 123 -6.18 73.85 REMARK 500 ASN A 230 -28.37 -155.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 103.3 REMARK 620 3 HIS A 270 NE2 86.0 87.2 REMARK 620 4 ACV A 404 S17 90.5 87.3 172.6 REMARK 620 5 HOH A 784 O 152.0 103.7 88.4 97.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 8P47 A 1 331 UNP P05326 IPNA_EMENI 1 331 SEQADV 8P47 ALA A 252 UNP P05326 ASN 252 ENGINEERED MUTATION SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ALA CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET ACV A 404 24 HET FE A 405 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE FE (III) ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 ACV C14 H25 N3 O6 S FORMUL 6 FE FE 3+ FORMUL 7 HOH *426(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N GLU A 101 O ARG A 188 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 405 1555 1555 2.16 LINK OD1 ASP A 216 FE FE A 405 1555 1555 2.00 LINK NE2 HIS A 270 FE FE A 405 1555 1555 2.17 LINK S17 ACV A 404 FE FE A 405 1555 1555 2.31 LINK FE FE A 405 O HOH A 784 1555 1555 2.20 CISPEP 1 ASP A 193 PRO A 194 0 0.05 CRYST1 41.675 74.730 101.459 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009856 0.00000